jgi.p|Nanoce1779_2|594418, mRNA_6277 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594418
Unique Name	mRNA_6277
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1253
Alignment location	scaffold_15:208750..210002 +

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Properties


Property Name	Value
TranscriptId	594504
Track	FilteredModels2
ProteinId	594418

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:208750..210002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594418	gene_6277	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594418	mRNA_6277-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6277	CDS_6277	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:208750..210002+
coding sequence from alignment at scaffold_15:208750..210002+

mRNA sequence

>mRNA_6277 ID=mRNA_6277|Name=jgi.p|Nanoce1779_2|594418|organism=Nannochloropsis oceanica|type=mRNA|length=1253bp
ACTGCTATTACGGTTGCTCCCGACGCTGCTGTTACAGCTGCTGCCGCCAG
TGGTGTTGGTGCTGCTACTGCTACTGCTACTGCTGCTGTAGATGATGGAG
GTAGACACGCAGGGGTGAGATGCATGAAATCGGCTGAAAAAGAGGGCGAA
GGGATTGAGGAAAGCAGGGCTGCAGGAGCGGGAGATGAGGAAGGAACGAA
ACGAAGCGAGGTGGAAGGGGCACCTATCGCCGGTGAGGACGAAGGAAAGA
GAGGAGGAGGAAAGGATAGGGTGAATTCGAAGCGCGCGAAAGTCGACAGC
GGCTGCAAGAGCAGCAGGAGCAGCAGCAGCAGCAGCGATGGTGGACAAGC
AGGTGTGATGGTGGGCACTCATCAGCTGCAGGAACTACTACCACAACAAC
AAAAACAACAACAACAACAACAACGACAACGACAGCACCAGCAGCTGCAG
CAGCAGCAAGGGTCGACTGTCCAGCCAGATTCTTTATCTAATCCTTCGCA
ACATCATTCTGATGGAGGAGGCGGGGTGGAAAGGGGGCAGCGTCGACAGC
AGGCAGACCCGCAGGTGGTGGAGGAAGGGGAGGAGGAGAAGGAGGGGTTT
CACATCCCGCATTGGGCCACGGGAGCACAAGACATGGGAGGGACACAGCT
CTCGGAGGGTCATACGGTCTTGAGTGATAACGAATGGCAGCTGCTGGATG
ACGAGGGGGAGATGGAGGTAGAGGAGGAGGGTGGGGAGGATGGAGGACAG
CTACAACTTAGCAAAAAAGAGGAGGACGAAAGCATGAAGGCGGCGGTGGG
GGAGGAAGAAGTGGCAGCTGTGATGTATTCGTCATCCACCAGTGCTACTC
CTGCCACGGCAATTGGTAAGGAGCCAAGAGATATCGACGCTGCTGCTGCT
GCTACTACTGCAGCTGCTGCTGCTGCTGCTCCTGTCGTTGCAGCTGCTGC
TGGTGCTCCGACAGCTGTTTCTACTGGTACTCATAACAGAGCCTTCCTCG
TGCCGACCCCCATTTCACACCGAGGCGACGGCAGTCAAAGTCACAGCCAA
AACGAGAATCAAAGTCAGCAGGGCCAAGGGAAGGATGGGGAGGGACGGAG
GCAGCAGCCACATGTGCAACAGATTAAAAGAGGTGACCACTCTCAGGGTA
GTGGGACCCCATCACAATGAAAGAGAAGAAAAAGAGGGAGCTGTTCAACA
AAATTTGCCATAAATCAAGTAGCGAAATGTAATGGAAGTGTAATGTTGCT
GAG

protein sequence of jgi.p|Nanoce1779_2|594418

>mRNA_6277-protein ID=mRNA_6277-protein|Name=jgi.p|Nanoce1779_2|594418|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MKSAEKEGEGIEESRAAGAGDEEGTKRSEVEGAPIAGEDEGKRGGGKDRV
NSKRAKVDSGCKSSRSSSSSSDGGQAGVMVGTHQLQELLPQQQKQQQQQQ
RQRQHQQLQQQQGSTVQPDSLSNPSQHHSDGGGGVERGQRRQQADPQVVE
EGEEEKEGFHIPHWATGAQDMGGTQLSEGHTVLSDNEWQLLDDEGEMEVE
EEGGEDGGQLQLSKKEEDESMKAAVGEEEVAAVMYSSSTSATPATAIGKE
PRDIDAAAAATTAAAAAAAPVVAAAAGAPTAVSTGTHNRAFLVPTPISHR
GDGSQSHSQNENQSQQGQGKDGEGRRQQPHVQQIKRGDHSQGSGTPSQ*

mRNA from alignment at scaffold_15:208750..210002+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6277 ID=mRNA_6277|Name=jgi.p|Nanoce1779_2|594418|organism=Nannochloropsis oceanica|type=mRNA|length=1253bp|location=Sequence derived from alignment at scaffold_15:208750..210002+ (Nannochloropsis oceanica)
ACTGCTATTACGGTTGCTCCCGACGCTGCTGTTACAGCTGCTGCCGCCAG
TGGTGTTGGTGCTGCTACTGCTACTGCTACTGCTGCTGTAGATGATGGAG
GTAGACACGCAGGGGTGAGATGCATGAAATCGGCTGAAAAAGAGGGCGAA
GGGATTGAGGAAAGCAGGGCTGCAGGAGCGGGAGATGAGGAAGGAACGAA
ACGAAGCGAGGTGGAAGGGGCACCTATCGCCGGTGAGGACGAAGGAAAGA
GAGGAGGAGGAAAGGATAGGGTGAATTCGAAGCGCGCGAAAGTCGACAGC
GGCTGCAAGAGCAGCAGGAGCAGCAGCAGCAGCAGCGATGGTGGACAAGC
AGGTGTGATGGTGGGCACTCATCAGCTGCAGGAACTACTACCACAACAAC
AAAAACAACAACAACAACAACAACGACAACGACAGCACCAGCAGCTGCAG
CAGCAGCAAGGGTCGACTGTCCAGCCAGATTCTTTATCTAATCCTTCGCA
ACATCATTCTGATGGAGGAGGCGGGGTGGAAAGGGGGCAGCGTCGACAGC
AGGCAGACCCGCAGGTGGTGGAGGAAGGGGAGGAGGAGAAGGAGGGGTTT
CACATCCCGCATTGGGCCACGGGAGCACAAGACATGGGAGGGACACAGCT
CTCGGAGGGTCATACGGTCTTGAGTGATAACGAATGGCAGCTGCTGGATG
ACGAGGGGGAGATGGAGGTAGAGGAGGAGGGTGGGGAGGATGGAGGACAG
CTACAACTTAGCAAAAAAGAGGAGGACGAAAGCATGAAGGCGGCGGTGGG
GGAGGAAGAAGTGGCAGCTGTGATGTATTCGTCATCCACCAGTGCTACTC
CTGCCACGGCAATTGGTAAGGAGCCAAGAGATATCGACGCTGCTGCTGCT
GCTACTACTGCAGCTGCTGCTGCTGCTGCTCCTGTCGTTGCAGCTGCTGC
TGGTGCTCCGACAGCTGTTTCTACTGGTACTCATAACAGAGCCTTCCTCG
TGCCGACCCCCATTTCACACCGAGGCGACGGCAGTCAAAGTCACAGCCAA
AACGAGAATCAAAGTCAGCAGGGCCAAGGGAAGGATGGGGAGGGACGGAG
GCAGCAGCCACATGTGCAACAGATTAAAAGAGGTGACCACTCTCAGGGTA
GTGGGACCCCATCACAATGAAAGAGAAGAAAAAGAGGGAGCTGTTCAACA
AAATTTGCCATAAATCAAGTAGCGAAATGTAATGGAAGTGTAATGTTGCT
GAG

Coding sequence (CDS) from alignment at scaffold_15:208750..210002+

>mRNA_6277 ID=mRNA_6277|Name=jgi.p|Nanoce1779_2|594418|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_15:208750..210002+ (Nannochloropsis oceanica)
ATGAAATCGGCTGAAAAAGAGGGCGAAGGGATTGAGGAAAGCAGGGCTGC
AGGAGCGGGAGATGAGGAAGGAACGAAACGAAGCGAGGTGGAAGGGGCAC
CTATCGCCGGTGAGGACGAAGGAAAGAGAGGAGGAGGAAAGGATAGGGTG
AATTCGAAGCGCGCGAAAGTCGACAGCGGCTGCAAGAGCAGCAGGAGCAG
CAGCAGCAGCAGCGATGGTGGACAAGCAGGTGTGATGGTGGGCACTCATC
AGCTGCAGGAACTACTACCACAACAACAAAAACAACAACAACAACAACAA
CGACAACGACAGCACCAGCAGCTGCAGCAGCAGCAAGGGTCGACTGTCCA
GCCAGATTCTTTATCTAATCCTTCGCAACATCATTCTGATGGAGGAGGCG
GGGTGGAAAGGGGGCAGCGTCGACAGCAGGCAGACCCGCAGGTGGTGGAG
GAAGGGGAGGAGGAGAAGGAGGGGTTTCACATCCCGCATTGGGCCACGGG
AGCACAAGACATGGGAGGGACACAGCTCTCGGAGGGTCATACGGTCTTGA
GTGATAACGAATGGCAGCTGCTGGATGACGAGGGGGAGATGGAGGTAGAG
GAGGAGGGTGGGGAGGATGGAGGACAGCTACAACTTAGCAAAAAAGAGGA
GGACGAAAGCATGAAGGCGGCGGTGGGGGAGGAAGAAGTGGCAGCTGTGA
TGTATTCGTCATCCACCAGTGCTACTCCTGCCACGGCAATTGGTAAGGAG
CCAAGAGATATCGACGCTGCTGCTGCTGCTACTACTGCAGCTGCTGCTGC
TGCTGCTCCTGTCGTTGCAGCTGCTGCTGGTGCTCCGACAGCTGTTTCTA
CTGGTACTCATAACAGAGCCTTCCTCGTGCCGACCCCCATTTCACACCGA
GGCGACGGCAGTCAAAGTCACAGCCAAAACGAGAATCAAAGTCAGCAGGG
CCAAGGGAAGGATGGGGAGGGACGGAGGCAGCAGCCACATGTGCAACAGA
TTAAAAGAGGTGACCACTCTCAGGGTAGTGGGACCCCATCACAATGA

Synonyms

Publications