jgi.p|Nanoce1779_2|594409, mRNA_6275 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594409
Unique NamemRNA_6275
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length453
Alignment locationscaffold_15:206560..207129 +

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Properties
Property NameValue
TranscriptId594495
TrackFilteredModels2
ProteinId594409
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:206560..207129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594409gene_6275Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594409mRNA_6275-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6275CDS_6275Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6275 ID=mRNA_6275|Name=jgi.p|Nanoce1779_2|594409|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ACAGGAATTTCATTATGCCACATGCGAAGAAACAGTCAGGCTAAGATGGC
TTTGATGGCGCTGGTCACGAAGTGGTTTCTGCTACTACCGCTGGAGCATT
ATGATACATCGATTTAAATGTTCAAGTCTGTGAGAGAACCCTCCCACTGT
GTTGCTCGAATGTCTTGATTATGTTGCTATCAGCTTCCTTTTCCTCCCTC
TTTTTCTTGAACTGGGAAAATTGTGGTAGCAAGCTATGGAGAAGGAACAT
TTATCAAGCAGTATCATGGGATGTTGCACCCTGTCACCACGTCTCTTCGA
CAAGGAGAATTGATGGAAGGAGCAAAGCTTGCTGCTGTTCAGTTCATATC
TGGCAATGTAGTTCTTTTTTTCGTAGCTATCCTACAAACCTAGAACTATC
GCGTGCAACCTGACGTCGTCTAGGAATTGCATACGAGGGGAATCGTTCCC
ACA
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protein sequence of jgi.p|Nanoce1779_2|594409

>mRNA_6275-protein ID=mRNA_6275-protein|Name=jgi.p|Nanoce1779_2|594409|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MLLSASFSSLFFLNWENCGSKLWRRNIYQAVSWDVAPCHHVSSTRRIDGR
SKACCCSVHIWQCSSFFRSYPTNLELSRAT*
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mRNA from alignment at scaffold_15:206560..207129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6275 ID=mRNA_6275|Name=jgi.p|Nanoce1779_2|594409|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at scaffold_15:206560..207129+ (Nannochloropsis oceanica)
ACAGGAATTTCATTATGCCACATGCGAAGAAACAGTCAGGCTAAGATGGC
TTTGATGGCGCTGGTCACGAAGTGGTTTCTGCTACTACCGCTGGAGCATT
ATGATACATCGATTTAAATGTTCAAGTCTGTGAGAGAACCCTCCCACTGT
GTTGCTCGAATGTCTTGATTATGTTGCTATCAGCTTCCTTTTCCTCCCTC
TTTTTCTTGAACTGGGAAAATTGTGGTAGCAAGCTATGGAGAAGGAACAT
TTATCAAGCAGTATCATGGGATGTTGCACCCTGTCACCACGTCTCTTCGA
CAAGGAGAATTGATGGAAGGAGCAAAGGTAAGACAATAGGAAAAGGAAAG
TTTTCCATGCGAAAAAGTGTACAATTGAGGATACAAGATGCAACTATGCC
CTCTCATCATACATATTTTATGCTATGTTCTCCTTGCATACAAGCTTGCT
GCTGTTCAGTTCATATCTGGCAATGTAGTTCTTTTTTTCGTAGCTATCCT
ACAAACCTAGAACTATCGCGTGCAACCTGACGTCGTCTAGGAATTGCATA
CGAGGGGAATCGTTCCCACA
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Coding sequence (CDS) from alignment at scaffold_15:206560..207129+

>mRNA_6275 ID=mRNA_6275|Name=jgi.p|Nanoce1779_2|594409|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_15:206560..207129+ (Nannochloropsis oceanica)
ATGTTGCTATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGAAAA
TTGTGGTAGCAAGCTATGGAGAAGGAACATTTATCAAGCAGTATCATGGG
ATGTTGCACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGATGGAAGG
AGCAAAGCTTGCTGCTGTTCAGTTCATATCTGGCAATGTAGTTCTTTTTT
TCGTAGCTATCCTACAAACCTAGAACTATCGCGTGCAACCTGAATGTTGC
TATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGAAAATTGTGGT
AGCAAGCTATGGAGAAGGAACATTTATCAAGCAGTATCATGGGATGTTGC
ACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGATGGAAGGAGCAAAG
CTTGCTGCTGTTCAGTTCATATCTGGCAATGTAGTTCTTTTTTTCGTAGC
TATCCTACAAACCTAGAACTATCGCGTGCAACCTGA
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Synonyms
Publications