jgi.p|Nanoce1779_2|594402, mRNA_6272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594402
Unique NamemRNA_6272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length876
Alignment locationscaffold_15:194563..195702 +

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Properties
Property NameValue
TranscriptId594488
TrackFilteredModels2
ProteinId594402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:194563..195702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594402gene_6272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594402mRNA_6272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6272CDS_6272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6272 ID=mRNA_6272|Name=jgi.p|Nanoce1779_2|594402|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ACAGGCGAACCGGGTACTGCCACCATTACGTAGAGGGCTGGCCGGCCTTA
TCGCCGCTCTCTTCCCCTTCTTCAAAAACCTCCCAACCCCGCGACACACC
TCGACACGACCCCATCCAGCCACATGGCCCCATACTATGACCCCGAGGCC
GGTCGCTATGTCATGCTTGCCTATGCACTGCTCATTTGCATCAATGGCAT
AGTTGCATGGATCAGAGTCCGCTGCAAAGTTTTACTCGTCTCGTCCATGC
TCAGCTCTGCCTGTCTCTTTGTGGCTTTTGGTTTATCATGGGTTTATCCA
GCTATAGCCTTCTCGATTGGTGCGATTATTGCAGCCAACCTCGGGATCAA
CTTTGCCTTGCGCGTACAAGCGGTCAGGAAATTCTTTCCGCCCGGTCTTC
TTCTCTTGATATCGTCGGGAGTGTTCGTGTTTTTGTGCATTCTGGCCGTT
CGCGCGTCTCCGACTAAGGGGCTGCGAGGCACTAAAGTAGTAGGAGGGAA
CACGCGGACAGTGACATCGTCAGGAGCACCAGGTGCGGCAGGAGCAACAG
CGAGTGGACGGCGAGGACTTTTGAAAAAGAGACCTCTGATGGTGCCAATG
CCAGTGCCTCGAGCTGGGGTATCGTGGCCACCGCCTCCAGAACATGAGAT
TCCTTGACCCACTTAACCATACTCGTTTGATATTTTGAATAAAGCTTGAA
AAGCGGAAAGAGTATGACATGATGATAAAAAAGAATGATGACAGAGAAAA
TGTCCTGACCGTTGAATGATTCTGGACGGGCAAGAGATTGCCTCTTAAAC
TGTTCCTTTGATACGCGCAGAAATCACCAGGCGTTTGGCGTAGATCGAAA
CAAAAAGCGAAACACGTCGAAATTTA
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protein sequence of jgi.p|Nanoce1779_2|594402

>mRNA_6272-protein ID=mRNA_6272-protein|Name=jgi.p|Nanoce1779_2|594402|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAPYYDPEAGRYVMLAYALLICINGIVAWIRVRCKVLLVSSMLSSACLFV
AFGLSWVYPAIAFSIGAIIAANLGINFALRVQAVRKFFPPGLLLLISSGV
FVFLCILAVRASPTKGLRGTKVVGGNTRTVTSSGAPGAAGATASGRRGLL
KKRPLMVPMPVPRAGVSWPPPPEHEIP*
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mRNA from alignment at scaffold_15:194563..195702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6272 ID=mRNA_6272|Name=jgi.p|Nanoce1779_2|594402|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at scaffold_15:194563..195702+ (Nannochloropsis oceanica)
ACAGGCGAACCGGGTACTGCCACCATTACGTAGAGGGCTGGCCGGCCTTA
TCGCCGCTCTCTTCCCCTTCTTCAAAAACCTCCCAACCCCGCGACACACC
TCGACACGACCCCATCCAGCCACATGGCCCCATACTATGACCCCGAGGCC
GGTCGCTATGTCATGCTTGCCTATGCACTGCTCATTTGCATCAATGGCAT
AGTTGGTATGTGTACCTATCTTTGGGATGCACTCGGCTACGGCTTCCCGC
TCCTCCCCTCCGTGTGTCTGTACTTGTCTGGAAGGGACTGTGCTTGCCAT
TCAGGGTGGTATTATAATATCGCTTCCCTATTTTATTTATCTTCCACAAA
CAGCTTATGACACAATTCTTCCTGACATTGCCTCCCTTATCCATTTCTTT
CCCCTTCTCCACTGCTTCTTTCATTCCTTCCCTCTTCTCTTCTCTTTTCC
TATCGTCCTCGTACTCCAGCATGGATCAGAGTCCGCTGCAAAGTTTTACT
CGTCTCGTCCATGCTCAGCTCTGCCTGTCTCTTTGTGGCTTTTGGTTTAT
CATGGGTTTATCCAGCTATAGCCTTCTCGATTGGTGCGATTATTGCAGCC
AACCTCGGGATCAACTTTGCCTTGCGCGTACAAGCGGTCAGGAAATTCTT
TCCGCCCGGTCTTCTTCTCTTGATATCGTCGGGAGTGTTCGTGTTTTTGT
GCATTCTGGCCGTTCGCGCGTCTCCGACTAAGGGGCTGCGAGGCACTAAA
GTAGTAGGAGGGAACACGCGGACAGTGACATCGTCAGGAGCACCAGGTGC
GGCAGGAGCAACAGCGAGTGGACGGCGAGGACTTTTGAAAAAGAGACCTC
TGATGGTGCCAATGCCAGTGCCTCGAGCTGGGGTATCGTGGCCACCGCCT
CCAGAACATGAGATTCCTTGACCCACTTAACCATACTCGTTTGATATTTT
GAATAAAGCTTGAAAAGCGGAAAGAGTATGACATGATGATAAAAAAGAAT
GATGACAGAGAAAATGTCCTGACCGTTGAATGATTCTGGACGGGCAAGAG
ATTGCCTCTTAAACTGTTCCTTTGATACGCGCAGAAATCACCAGGCGTTT
GGCGTAGATCGAAACAAAAAGCGAAACACGTCGAAATTTA
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Coding sequence (CDS) from alignment at scaffold_15:194563..195702+

>mRNA_6272 ID=mRNA_6272|Name=jgi.p|Nanoce1779_2|594402|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_15:194563..195702+ (Nannochloropsis oceanica)
ATGGCCCCATACTATGACCCCGAGGCCGGTCGCTATGTCATGCTTGCCTA
TGCACTGCTCATTTGCATCAATGGCATAGTTGCATGGATCAGAGTCCGCT
GCAAAGTTTTACTCGTCTCGTCCATGCTCAGCTCTGCCTGTCTCTTTGTG
GCTTTTGGTTTATCATGGGTTTATCCAGCTATAGCCTTCTCGATTGGTGC
GATTATTGCAGCCAACCTCGGGATCAACTTTGCCTTGCGCGTACAAGCGG
TCAGGAAATTCTTTCCGCCCGGTCTTCTTCTCTTGATATCGTCGGGAGTG
TTCGTGTTTTTGTGCATTCTGGCCGTTCGCGCGTCTCCGACTAAGGGGCT
GCGAGGCACTAAAGTAGTAGGAGGGAACACGCGGACAGTGACATCGTCAG
GAGCACCAGGTGCGGCAGGAGCAACAGCGAGTGGACGGCGAGGACTTTTG
AAAAAGAGACCTCTGATGGTGCCAATGCCAGTGCCTCGAGCTGGGGTATC
GTGGCCACCGCCTCCAGAACATGAGATTCCTTGAATGGCCCCATACTATG
ACCCCGAGGCCGGTCGCTATGTCATGCTTGCCTATGCACTGCTCATTTGC
ATCAATGGCATAGTTGCATGGATCAGAGTCCGCTGCAAAGTTTTACTCGT
CTCGTCCATGCTCAGCTCTGCCTGTCTCTTTGTGGCTTTTGGTTTATCAT
GGGTTTATCCAGCTATAGCCTTCTCGATTGGTGCGATTATTGCAGCCAAC
CTCGGGATCAACTTTGCCTTGCGCGTACAAGCGGTCAGGAAATTCTTTCC
GCCCGGTCTTCTTCTCTTGATATCGTCGGGAGTGTTCGTGTTTTTGTGCA
TTCTGGCCGTTCGCGCGTCTCCGACTAAGGGGCTGCGAGGCACTAAAGTA
GTAGGAGGGAACACGCGGACAGTGACATCGTCAGGAGCACCAGGTGCGGC
AGGAGCAACAGCGAGTGGACGGCGAGGACTTTTGAAAAAGAGACCTCTGA
TGGTGCCAATGCCAGTGCCTCGAGCTGGGGTATCGTGGCCACCGCCTCCA
GAACATGAGATTCCTTGA
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Synonyms
Publications