jgi.p|Nanoce1779_2|594399, mRNA_6271 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594399
Unique Name	mRNA_6271
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	887
Alignment location	scaffold_15:192448..194181 -

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Properties


Property Name	Value
TranscriptId	594485
Track	FilteredModels2
ProteinId	594399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:192448..194181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594399	gene_6271	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594399	mRNA_6271-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6271	CDS_6271	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:192448..194181-
coding sequence from alignment at scaffold_15:192448..194181-

mRNA sequence

>mRNA_6271 ID=mRNA_6271|Name=jgi.p|Nanoce1779_2|594399|organism=Nannochloropsis oceanica|type=mRNA|length=887bp
AAAAACTACAGAGGGATCATGGCAACCCCCGCCGAGGACGCCCTAGCACG
GCAACAAAATCTCGACATACAGAAGCATCTTTCCGTGGGCAGGAACCCTC
GTGGCATCCCCACTGCGGCCTTCATTGACGATGTGGACGATTTCTTACAG
AAGTTGGGTGGGGTACCTGTGGAGACGGCCATCGGGGCTTTCAACGAGCT
CTATGGTAAATACAAGCTGATGGAAAATAGCCTCAGTCGGACCAAGATCA
ACATGAAGAGTAAAAAGCCAGAGATCGAAAAAACGTTGGAACTCGTTCGA
ATCCTGCAAGAGAAGCAAATGGAGGGAGAAAGCCTCTCCACGCATTACAA
CCTAGCTGACACTATCTACGCCAAAGCCACGGTGGCCTGCGACGGCCGCG
TCTGTCTATGGTTGGGGGCGAACGTCATGCTTGAATACTCGTACGAGGAG
GCCGTGGGGGTGCTGGAGACGAGCCTTGCCAACGCCAAAGAAAAACTGAA
AACGACGAACGAGGACCTCGAGCACCTCAAGAATCAGACTATCACCGTAG
AAGTCAACATGGCCCGTCTCTTCAACCATGACGTCAAAAGGCGGAAGGCC
TTGCAGCTGCAGAAGTTGGAAGGAGGAGGAGCAGCGGGAGCAGGAGCTGG
AGGAGGGAAAGTTAAGGCGAATGTGAAGGCGTTGGCATGAGGGAGGGAGC
AAGGAAACGGGGGGAGAGGGAAACGTGTAAAAGAGAGATTAAGATATTTT
CATTCAAAGGGAATCGATGTAACCCACAGCACCACCACCACCACCACCAG
CAGCTCCTGCTGCACCACCACCAGTAACAGCCGCAGGAGGGGGCGAGTTT
TGTATCCTTTTTCTTCACTCGCCATACCATCGAGCAA

protein sequence of jgi.p|Nanoce1779_2|594399

>mRNA_6271-protein ID=mRNA_6271-protein|Name=jgi.p|Nanoce1779_2|594399|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MATPAEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVP
VETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQ
MEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLE
TSLANAKEKLKTTNEDLEHLKNQTITVEVNMARLFNHDVKRRKALQLQKL
EGGGAAGAGAGGGKVKANVKALA*

mRNA from alignment at scaffold_15:192448..194181-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6271 ID=mRNA_6271|Name=jgi.p|Nanoce1779_2|594399|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at scaffold_15:192448..194181- (Nannochloropsis oceanica)
AAAAACTACAGAGGGATCATGGCAACCCCCGCCGAGGACGCCCTAGCACG
GCAACAAAATCTCGACATACAGAAGCATCTTTCCGTGGGCAGGAACCCTC
GTGGCATCCCCACTGCGGCCTTCATTGTGAGTATTTGACAAATACCTACA
TGCCCTTCCCCTTTCCCCCTCTCTCTCCCTCCCTCCCTCCCATCCTACAT
CGCGGTGTGACTCACAACGTTCCACCACGCTGTTTAAACAGGACGATGTG
GACGATTTCTTACAGAAGTTGGGTGGGGTACCTGTGGAGACGGCCATCGG
GGCTTTCAACGAGCTCTATGGGTAAGGGAGGGGACAGAGGAGGGATGAGA
CGATAAACGGATAGAGGGAAGAGGCTGTATGGGACATGTCACAAACATTT
GTATTGTATGGATTCTTGTCTTCCGTGGGTTTTGTTCTATTTCACTTCTT
TTGTTCTCCTCCTTATTTGAAGCTTGCCGTTTCACTTTGTTGTGCATGCT
ACCTCTCCTTTTTGCTCCATCTCCTCGCACATTTTTCCCAAGTCTACACC
CACACCCTCTCTCTTCCTCCCTCTCACTCTTTCTCCTCTCCTCAGTAAAT
ACAAGCTGATGGAAAATAGCCTCAGTCGGACCAAGATCAACATGAAGAGT
AAAAAGCCAGAGATCGAAAAAACGTTGGAACTCGTTCGAATCCTGCAAGA
GAAGCAAATGGAGGGAGAAAGCCTCTCCACGCATTACAACCTAGGTAGGT
TTCCTTAATTTCCTCTATCTCCCTCCCCTCGTCTTGTCCTCACTCCTACC
CTAGGTGTCTTCCTTTTCCCCACCACCCTTTCTCTCTCCTTCTCGCCCTC
CTTCCCTCCTTTGGTCTGGCTCTCCACGCGCACTACGCGGATTTTCAATT
GTTTTCCTTGCAGTCCAAAACCCCTGGAGGCGACAGCAAGCTCGGTAGGT
AGCCTCCCTCACACTCTTTCTTCCTCCCTCCCTCTCTCTCTCTCCCTCCT
TCCCTGTAGCTGACACTATCTACGCCAAAGCCACGGTGGCCTGCGACGGC
CGCGTCTGTCTATGGTTGGGGGCGAACGTCATGCTTGAATACTCGTACGA
GGAGGCCGTGGGGGTGCTGGAGACGAGCCTTGCCAACGCCAAAGAAAAAC
TGGTGAGGAGGGAGGGAAAGAGGGAGGGAGGGACGGGGCATGTCGTGTAC
GAGTTTAATTTAAGGGACGATATACTTCTGGGGAATCAAAGGAGAAAAAA
GTGCGTCATCCCTCCCTACCTTTCCATCTCTTTTCCCCGTCCTTTCAAAA
CTCCCTCCATCGCTCCCTTCCTTTATCTCTTTCAATCCCCGCCAGAAAAC
GACGAACGAGGACCTCGAGCACCTCAAGAATCAGACTATCACCGTAGAAG
TCAACATGGCCCGTCTCTTCAACCATGACGTCAAAAGGCGGAAGGCCTTG
CAGCTGCAGAAGTTGGAAGGAGGAGGAGCAGCGGGAGCAGGAGCTGGAGG
AGGGAAAGTTAAGGCGAATGTGAAGGCGTTGGCATGAGGGAGGGAGCAAG
GAAACGGGGGGAGAGGGAAACGTGTAAAAGAGAGATTAAGATATTTTCAT
TCAAAGGGAATCGATGTAACCCACAGCACCACCACCACCACCACCAGCAG
CTCCTGCTGCACCACCACCAGTAACAGCCGCAGGAGGGGGCGAGTTTTGT
ATCCTTTTTCTTCACTCGCCATACCATCGAGCAA

Coding sequence (CDS) from alignment at scaffold_15:192448..194181-

>mRNA_6271 ID=mRNA_6271|Name=jgi.p|Nanoce1779_2|594399|organism=Nannochloropsis oceanica|type=CDS|length=3360bp|location=Sequence derived from alignment at scaffold_15:192448..194181- (Nannochloropsis oceanica)
AAAACGACGAACGAGGACCTCGAGCACCTCAAGAATCAGACTATCACCGT
AGAAGTCAACATGGCCCGTCTCTTCAACCATGACGTCAAAAGGCGGAAGG
CCTTGCAGCTGCAGAAGTTGGAAGGAGGAGGAGCAGCGGGAGCAGGAGCT
GGAGGAGGGAAAGTTAAGGCGAATGTGAAGGCGTTGGCATGACTGACACT
ATCTACGCCAAAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTT
GGGGGCGAACGTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGC
TGGAGACGAGCCTTGCCAACGCCAAAGAAAAACTGTAAATACAAGCTGAT
GGAAAATAGCCTCAGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAG
AGATCGAAAAAACGTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATG
GAGGGAGAAAGCCTCTCCACGCATTACAACCTAGGACGATGTGGACGATT
TCTTACAGAAGTTGGGTGGGGTACCTGTGGAGACGGCCATCGGGGCTTTC
AACGAGCTCTATGGATGGCAACCCCCGCCGAGGACGCCCTAGCACGGCAA
CAAAATCTCGACATACAGAAGCATCTTTCCGTGGGCAGGAACCCTCGTGG
CATCCCCACTGCGGCCTTCATTAAAACGACGAACGAGGACCTCGAGCACC
TCAAGAATCAGACTATCACCGTAGAAGTCAACATGGCCCGTCTCTTCAAC
CATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTGGAAGGAGG
AGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGCGAATGTGA
AGGCGTTGGCATGACTGACACTATCTACGCCAAAGCCACGGTGGCCTGCG
ACGGCCGCGTCTGTCTATGGTTGGGGGCGAACGTCATGCTTGAATACTCG
TACGAGGAGGCCGTGGGGGTGCTGGAGACGAGCCTTGCCAACGCCAAAGA
AAAACTGTAAATACAAGCTGATGGAAAATAGCCTCAGTCGGACCAAGATC
AACATGAAGAGTAAAAAGCCAGAGATCGAAAAAACGTTGGAACTCGTTCG
AATCCTGCAAGAGAAGCAAATGGAGGGAGAAAGCCTCTCCACGCATTACA
ACCTAGGACGATGTGGACGATTTCTTACAGAAGTTGGGTGGGGTACCTGT
GGAGACGGCCATCGGGGCTTTCAACGAGCTCTATGGATGGCAACCCCCGC
CGAGGACGCCCTAGCACGGCAACAAAATCTCGACATACAGAAGCATCTTT
CCGTGGGCAGGAACCCTCGTGGCATCCCCACTGCGGCCTTCATTAAAACG
ACGAACGAGGACCTCGAGCACCTCAAGAATCAGACTATCACCGTAGAAGT
CAACATGGCCCGTCTCTTCAACCATGACGTCAAAAGGCGGAAGGCCTTGC
AGCTGCAGAAGTTGGAAGGAGGAGGAGCAGCGGGAGCAGGAGCTGGAGGA
GGGAAAGTTAAGGCGAATGTGAAGGCGTTGGCATGACTGACACTATCTAC
GCCAAAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGGC
GAACGTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAGA
CGAGCCTTGCCAACGCCAAAGAAAAACTGTAAATACAAGCTGATGGAAAA
TAGCCTCAGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAGAGATCG
AAAAAACGTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATGGAGGGA
GAAAGCCTCTCCACGCATTACAACCTAGGACGATGTGGACGATTTCTTAC
AGAAGTTGGGTGGGGTACCTGTGGAGACGGCCATCGGGGCTTTCAACGAG
CTCTATGGATGGCAACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAAT
CTCGACATACAGAAGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCC
CACTGCGGCCTTCATTAAAACGACGAACGAGGACCTCGAGCACCTCAAGA
ATCAGACTATCACCGTAGAAGTCAACATGGCCCGTCTCTTCAACCATGAC
GTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTGGAAGGAGGAGGAGC
AGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGCGAATGTGAAGGCGT
TGGCATGACTGACACTATCTACGCCAAAGCCACGGTGGCCTGCGACGGCC
GCGTCTGTCTATGGTTGGGGGCGAACGTCATGCTTGAATACTCGTACGAG
GAGGCCGTGGGGGTGCTGGAGACGAGCCTTGCCAACGCCAAAGAAAAACT
GTAAATACAAGCTGATGGAAAATAGCCTCAGTCGGACCAAGATCAACATG
AAGAGTAAAAAGCCAGAGATCGAAAAAACGTTGGAACTCGTTCGAATCCT
GCAAGAGAAGCAAATGGAGGGAGAAAGCCTCTCCACGCATTACAACCTAG
GACGATGTGGACGATTTCTTACAGAAGTTGGGTGGGGTACCTGTGGAGAC
GGCCATCGGGGCTTTCAACGAGCTCTATGGATGGCAACCCCCGCCGAGGA
CGCCCTAGCACGGCAACAAAATCTCGACATACAGAAGCATCTTTCCGTGG
GCAGGAACCCTCGTGGCATCCCCACTGCGGCCTTCATTAAAACGACGAAC
GAGGACCTCGAGCACCTCAAGAATCAGACTATCACCGTAGAAGTCAACAT
GGCCCGTCTCTTCAACCATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGC
AGAAGTTGGAAGGAGGAGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAA
GTTAAGGCGAATGTGAAGGCGTTGGCATGACTGACACTATCTACGCCAAA
GCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGGCGAACGT
CATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAGACGAGCC
TTGCCAACGCCAAAGAAAAACTGTAAATACAAGCTGATGGAAAATAGCCT
CAGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAGAGATCGAAAAAA
CGTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATGGAGGGAGAAAGC
CTCTCCACGCATTACAACCTAGGACGATGTGGACGATTTCTTACAGAAGT
TGGGTGGGGTACCTGTGGAGACGGCCATCGGGGCTTTCAACGAGCTCTAT
GGATGGCAACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAATCTCGAC
ATACAGAAGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCCCACTGC
GGCCTTCATT

Synonyms

Publications