jgi.p|Nanoce1779_2|671875, mRNA_6269 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671875
Unique Name	mRNA_6269
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2420
Alignment location	scaffold_15:184049..186468 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671961
Track	FilteredModels2
ProteinId	671875

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:184049..186468 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671875	gene_6269	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671875	mRNA_6269-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6269	CDS_6269	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:184049..186468+
coding sequence from alignment at scaffold_15:184049..186468+

mRNA sequence

>mRNA_6269 ID=mRNA_6269|Name=jgi.p|Nanoce1779_2|671875|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp
CAGGTGAGCAGCCTTTTCTCGACTGTTTTGGGCACAAAAGCATCGCCATC
GTCAACAATTGCTGCACTGCAGGACGCCCCTCCCCCTCCTCGCAGCGCGC
AACGCCATGCATGTCACGATAGAAAACGGACAACTCTTGACCGCAACAAG
AAAGAAATCACGAGTTCCTACCCCCTGTAGTGCCGCCGCGACCCTCCCTC
TCCTCCTTTTCCCATGGATTGTCCTTTTGGTGAACGCGCTTCCGCATAGG
CAGAATCAGCAACCACACCCCTCCTTGGCCTTTGCAGGTGGTGCTCCTTA
CTGCCGTAATCCTGATGAATCATCGCCCGTCTATGGTGGGAGCAGCAGTA
ATTTGTGTCTAAGCGCCGCTCGGACTGACGCCATGGGTGACTCTGACCCC
TCCTCCCCTCCCTCTCCTCCAGCGAAACGCAAGAAATCAACGTGGGACCG
ATTCTCCTCTGCCATTAACAAAGTTCAAGATATTGCCCAATCGGACGACT
TTCAACGTCTCGCCCGCGGAGCCCGCAAGCTTCTCAAGGAGGTGGACATC
GACGTGCCGACCATGGAACAAAACCTTGGCTCCCTTCGGCTGTCCCTTGA
TCGTTCCCTCTCCTCGACCGTTTTGACGTTCGAGCACCTCTTGGAGCTGT
ACGGAGGCCGTTCACCCGAGGCCGACATCCTCTTAAATATGGCGAGAAAG
CTTGTGACAAAGGTACTACATGCCAAATTGAACAATCTCATGTCTCCCAC
AGCGATTGAGTGGGCTGTGTATGCGGTCAACTCGACAGCATTGTTAGTCG
AAGAAGAGGCCGCACGTGTCCTCGCTGAGGGGCTAGCGACCGCGGAGAAC
ATGCTGGAGGAACCGACCTTCATCGAGATGCAACGGGAGGTGATGAAGCG
GATGGTAGTGGTGGCCGAGGATGCTGAGGGGATTGCTTGGAATGTGATTC
AGAGTCGATGGTTCCGGGCAGGGTGGGAAGAGGATGAGTTAAAGCAGTTC
GACGCAATGCTCAATGCCAGGCTGGTGCCACGCTTGGTCTTAGCGGTAGC
AGCAGCGGTGTTGCATGGATGGCGACCACTGGAGGATCCGCTGCTGGCGC
TGCTGGTGGTAGGGTACGCGTCGGGCAGTTTAACAAAAAGCGTTGCGAGG
AATTTTATCGGTTTGGTAGAGGCCTCGCTGGTGGTTAAGGAGGAGGGGGG
GGGGGGCGTGGGAGCCAGGAAAGGGGGCCACATGATGGACAGCTTTCCGG
ATGTATGGCGGACGAAGGAGTCGGCGGGAGAGATAGGGGAGGGGTTGTTT
CGACTGTTTGAGGCTTTGGAGAAACGAAGTGCCATGCGTTTGGACGCACG
GCAGGCACGTGCTCGCGCAGCAGCAACAGCAGCAATTGTACCCAGGGAGG
CATTAGCAGGATCAACACAAGACGAGGACAGTACCTTCACAGATCTTTCG
GCTTCTTCTTCCTCTTCTTCTTCTTCTTCTCCTTCCTCCTCCTCCTCCTT
CTCCTCCTCACCAATGCAGCTATCACCAACGCAGCTATCATCAAGTCCTG
CAAGTCATTACTCTTCCTCGTCGTCCTCATCCTCGTCCTCCCACCTACCC
CTCTCTTCCTCCTCTTCCTCCTTCCCCTCTTCACCTCCATCGGGCAAGAA
ATTCATGGTCGCCTCTTATTCCTTTCCCAACAAGCTTGCCGCCCTAACAG
GTGGCGCAGGTATCGAAGGAGGGCGGGAAGAAGGGAGGAGTCCAAGGTAC
TACCCTGCCTTTACCAGCACTCGACGGGGCAAGACTTTGAGATACCTGAC
CAAAACCGTGCATTTGACGAGAACGTATTGGAAAACGGCGGCCACGGCCA
TGCTAGGGACTGTTGGGCTTGTGTTTCTGGCGCGCTTATACGGGACACCA
TCCACGTTGACGATATCGGTTGGGGGGAACGAAGAGAGAGAGGGGGGGGG
GAAGGTAGGAGGGAAGGGGGAGAGGAAGATAGAGGAGCGGAGGGATGGTT
TAGTGTATACTTCGCCTTTGGAAGGGTTGGACGACTAGGGCTAGAAGAGT
GAGGGGGTGAGAGTGTATATATGCATAGAAAAGACATTGAAGGTCGATCA
GTCGCTGATGCGGGTTCTGCTAGGAAATTGTTAAAGCATTATGCATAAAT
CTGTATGCACACATGTACTTCTCATAAGTGTAAGAATAGCGCCGCTTATA
GGACGGCAATGCCGCGCCTGGTGTCTGCATTTCCAATATCTAAAATGCTC
TTGAGTGAAGGGATGAATGGTAAATAAGGAGAGAAAAACAAACCTAAAAG
AGGCTCTCGAAGAAATAAATCGACCACGAAAAGGAACAGGGAGCGCCTGC
ATTTCACAATAAAAAGTCCAAAAAAATGAAAAAATCTCACGTCTCTCGCC
TGGAACACATTTTGGGTTTT

protein sequence of jgi.p|Nanoce1779_2|671875

>mRNA_6269-protein ID=mRNA_6269-protein|Name=jgi.p|Nanoce1779_2|671875|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MHVTIENGQLLTATRKKSRVPTPCSAAATLPLLLFPWIVLLVNALPHRQN
QQPHPSLAFAGGAPYCRNPDESSPVYGGSSSNLCLSAARTDAMGDSDPSS
PPSPPAKRKKSTWDRFSSAINKVQDIAQSDDFQRLARGARKLLKEVDIDV
PTMEQNLGSLRLSLDRSLSSTVLTFEHLLELYGGRSPEADILLNMARKLV
TKVLHAKLNNLMSPTAIEWAVYAVNSTALLVEEEAARVLAEGLATAENML
EEPTFIEMQREVMKRMVVVAEDAEGIAWNVIQSRWFRAGWEEDELKQFDA
MLNARLVPRLVLAVAAAVLHGWRPLEDPLLALLVVGYASGSLTKSVARNF
IGLVEASLVVKEEGGGGVGARKGGHMMDSFPDVWRTKESAGEIGEGLFRL
FEALEKRSAMRLDARQARARAAATAAIVPREALAGSTQDEDSTFTDLSAS
SSSSSSSSPSSSSSFSSSPMQLSPTQLSSSPASHYSSSSSSSSSSHLPLS
SSSSSFPSSPPSGKKFMVASYSFPNKLAALTGGAGIEGGREEGRSPRYYP
AFTSTRRGKTLRYLTKTVHLTRTYWKTAATAMLGTVGLVFLARLYGTPST
LTISVGGNEEREGGGKVGGKGERKIEERRDGLVYTSPLEGLDD*

mRNA from alignment at scaffold_15:184049..186468+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6269 ID=mRNA_6269|Name=jgi.p|Nanoce1779_2|671875|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at scaffold_15:184049..186468+ (Nannochloropsis oceanica)
CAGGTGAGCAGCCTTTTCTCGACTGTTTTGGGCACAAAAGCATCGCCATC
GTCAACAATTGCTGCACTGCAGGACGCCCCTCCCCCTCCTCGCAGCGCGC
AACGCCATGCATGTCACGATAGAAAACGGACAACTCTTGACCGCAACAAG
AAAGAAATCACGAGTTCCTACCCCCTGTAGTGCCGCCGCGACCCTCCCTC
TCCTCCTTTTCCCATGGATTGTCCTTTTGGTGAACGCGCTTCCGCATAGG
CAGAATCAGCAACCACACCCCTCCTTGGCCTTTGCAGGTGGTGCTCCTTA
CTGCCGTAATCCTGATGAATCATCGCCCGTCTATGGTGGGAGCAGCAGTA
ATTTGTGTCTAAGCGCCGCTCGGACTGACGCCATGGGTGACTCTGACCCC
TCCTCCCCTCCCTCTCCTCCAGCGAAACGCAAGAAATCAACGTGGGACCG
ATTCTCCTCTGCCATTAACAAAGTTCAAGATATTGCCCAATCGGACGACT
TTCAACGTCTCGCCCGCGGAGCCCGCAAGCTTCTCAAGGAGGTGGACATC
GACGTGCCGACCATGGAACAAAACCTTGGCTCCCTTCGGCTGTCCCTTGA
TCGTTCCCTCTCCTCGACCGTTTTGACGTTCGAGCACCTCTTGGAGCTGT
ACGGAGGCCGTTCACCCGAGGCCGACATCCTCTTAAATATGGCGAGAAAG
CTTGTGACAAAGGTACTACATGCCAAATTGAACAATCTCATGTCTCCCAC
AGCGATTGAGTGGGCTGTGTATGCGGTCAACTCGACAGCATTGTTAGTCG
AAGAAGAGGCCGCACGTGTCCTCGCTGAGGGGCTAGCGACCGCGGAGAAC
ATGCTGGAGGAACCGACCTTCATCGAGATGCAACGGGAGGTGATGAAGCG
GATGGTAGTGGTGGCCGAGGATGCTGAGGGGATTGCTTGGAATGTGATTC
AGAGTCGATGGTTCCGGGCAGGGTGGGAAGAGGATGAGTTAAAGCAGTTC
GACGCAATGCTCAATGCCAGGCTGGTGCCACGCTTGGTCTTAGCGGTAGC
AGCAGCGGTGTTGCATGGATGGCGACCACTGGAGGATCCGCTGCTGGCGC
TGCTGGTGGTAGGGTACGCGTCGGGCAGTTTAACAAAAAGCGTTGCGAGG
AATTTTATCGGTTTGGTAGAGGCCTCGCTGGTGGTTAAGGAGGAGGGGGG
GGGGGGCGTGGGAGCCAGGAAAGGGGGCCACATGATGGACAGCTTTCCGG
ATGTATGGCGGACGAAGGAGTCGGCGGGAGAGATAGGGGAGGGGTTGTTT
CGACTGTTTGAGGCTTTGGAGAAACGAAGTGCCATGCGTTTGGACGCACG
GCAGGCACGTGCTCGCGCAGCAGCAACAGCAGCAATTGTACCCAGGGAGG
CATTAGCAGGATCAACACAAGACGAGGACAGTACCTTCACAGATCTTTCG
GCTTCTTCTTCCTCTTCTTCTTCTTCTTCTCCTTCCTCCTCCTCCTCCTT
CTCCTCCTCACCAATGCAGCTATCACCAACGCAGCTATCATCAAGTCCTG
CAAGTCATTACTCTTCCTCGTCGTCCTCATCCTCGTCCTCCCACCTACCC
CTCTCTTCCTCCTCTTCCTCCTTCCCCTCTTCACCTCCATCGGGCAAGAA
ATTCATGGTCGCCTCTTATTCCTTTCCCAACAAGCTTGCCGCCCTAACAG
GTGGCGCAGGTATCGAAGGAGGGCGGGAAGAAGGGAGGAGTCCAAGGTAC
TACCCTGCCTTTACCAGCACTCGACGGGGCAAGACTTTGAGATACCTGAC
CAAAACCGTGCATTTGACGAGAACGTATTGGAAAACGGCGGCCACGGCCA
TGCTAGGGACTGTTGGGCTTGTGTTTCTGGCGCGCTTATACGGGACACCA
TCCACGTTGACGATATCGGTTGGGGGGAACGAAGAGAGAGAGGGGGGGGG
GAAGGTAGGAGGGAAGGGGGAGAGGAAGATAGAGGAGCGGAGGGATGGTT
TAGTGTATACTTCGCCTTTGGAAGGGTTGGACGACTAGGGCTAGAAGAGT
GAGGGGGTGAGAGTGTATATATGCATAGAAAAGACATTGAAGGTCGATCA
GTCGCTGATGCGGGTTCTGCTAGGAAATTGTTAAAGCATTATGCATAAAT
CTGTATGCACACATGTACTTCTCATAAGTGTAAGAATAGCGCCGCTTATA
GGACGGCAATGCCGCGCCTGGTGTCTGCATTTCCAATATCTAAAATGCTC
TTGAGTGAAGGGATGAATGGTAAATAAGGAGAGAAAAACAAACCTAAAAG
AGGCTCTCGAAGAAATAAATCGACCACGAAAAGGAACAGGGAGCGCCTGC
ATTTCACAATAAAAAGTCCAAAAAAATGAAAAAATCTCACGTCTCTCGCC
TGGAACACATTTTGGGTTTT

Coding sequence (CDS) from alignment at scaffold_15:184049..186468+

>mRNA_6269 ID=mRNA_6269|Name=jgi.p|Nanoce1779_2|671875|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_15:184049..186468+ (Nannochloropsis oceanica)
ATGCATGTCACGATAGAAAACGGACAACTCTTGACCGCAACAAGAAAGAA
ATCACGAGTTCCTACCCCCTGTAGTGCCGCCGCGACCCTCCCTCTCCTCC
TTTTCCCATGGATTGTCCTTTTGGTGAACGCGCTTCCGCATAGGCAGAAT
CAGCAACCACACCCCTCCTTGGCCTTTGCAGGTGGTGCTCCTTACTGCCG
TAATCCTGATGAATCATCGCCCGTCTATGGTGGGAGCAGCAGTAATTTGT
GTCTAAGCGCCGCTCGGACTGACGCCATGGGTGACTCTGACCCCTCCTCC
CCTCCCTCTCCTCCAGCGAAACGCAAGAAATCAACGTGGGACCGATTCTC
CTCTGCCATTAACAAAGTTCAAGATATTGCCCAATCGGACGACTTTCAAC
GTCTCGCCCGCGGAGCCCGCAAGCTTCTCAAGGAGGTGGACATCGACGTG
CCGACCATGGAACAAAACCTTGGCTCCCTTCGGCTGTCCCTTGATCGTTC
CCTCTCCTCGACCGTTTTGACGTTCGAGCACCTCTTGGAGCTGTACGGAG
GCCGTTCACCCGAGGCCGACATCCTCTTAAATATGGCGAGAAAGCTTGTG
ACAAAGGTACTACATGCCAAATTGAACAATCTCATGTCTCCCACAGCGAT
TGAGTGGGCTGTGTATGCGGTCAACTCGACAGCATTGTTAGTCGAAGAAG
AGGCCGCACGTGTCCTCGCTGAGGGGCTAGCGACCGCGGAGAACATGCTG
GAGGAACCGACCTTCATCGAGATGCAACGGGAGGTGATGAAGCGGATGGT
AGTGGTGGCCGAGGATGCTGAGGGGATTGCTTGGAATGTGATTCAGAGTC
GATGGTTCCGGGCAGGGTGGGAAGAGGATGAGTTAAAGCAGTTCGACGCA
ATGCTCAATGCCAGGCTGGTGCCACGCTTGGTCTTAGCGGTAGCAGCAGC
GGTGTTGCATGGATGGCGACCACTGGAGGATCCGCTGCTGGCGCTGCTGG
TGGTAGGGTACGCGTCGGGCAGTTTAACAAAAAGCGTTGCGAGGAATTTT
ATCGGTTTGGTAGAGGCCTCGCTGGTGGTTAAGGAGGAGGGGGGGGGGGG
CGTGGGAGCCAGGAAAGGGGGCCACATGATGGACAGCTTTCCGGATGTAT
GGCGGACGAAGGAGTCGGCGGGAGAGATAGGGGAGGGGTTGTTTCGACTG
TTTGAGGCTTTGGAGAAACGAAGTGCCATGCGTTTGGACGCACGGCAGGC
ACGTGCTCGCGCAGCAGCAACAGCAGCAATTGTACCCAGGGAGGCATTAG
CAGGATCAACACAAGACGAGGACAGTACCTTCACAGATCTTTCGGCTTCT
TCTTCCTCTTCTTCTTCTTCTTCTCCTTCCTCCTCCTCCTCCTTCTCCTC
CTCACCAATGCAGCTATCACCAACGCAGCTATCATCAAGTCCTGCAAGTC
ATTACTCTTCCTCGTCGTCCTCATCCTCGTCCTCCCACCTACCCCTCTCT
TCCTCCTCTTCCTCCTTCCCCTCTTCACCTCCATCGGGCAAGAAATTCAT
GGTCGCCTCTTATTCCTTTCCCAACAAGCTTGCCGCCCTAACAGGTGGCG
CAGGTATCGAAGGAGGGCGGGAAGAAGGGAGGAGTCCAAGGTACTACCCT
GCCTTTACCAGCACTCGACGGGGCAAGACTTTGAGATACCTGACCAAAAC
CGTGCATTTGACGAGAACGTATTGGAAAACGGCGGCCACGGCCATGCTAG
GGACTGTTGGGCTTGTGTTTCTGGCGCGCTTATACGGGACACCATCCACG
TTGACGATATCGGTTGGGGGGAACGAAGAGAGAGAGGGGGGGGGGAAGGT
AGGAGGGAAGGGGGAGAGGAAGATAGAGGAGCGGAGGGATGGTTTAGTGT
ATACTTCGCCTTTGGAAGGGTTGGACGACTAG

Synonyms

Publications