jgi.p|Nanoce1779_2|594373, mRNA_6263 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594373
Unique Name	mRNA_6263
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1057
Alignment location	scaffold_15:165679..166735 -

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Properties


Property Name	Value
TranscriptId	594459
Track	FilteredModels2
ProteinId	594373

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:165679..166735 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594373	gene_6263	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594373	mRNA_6263-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6263	CDS_6263	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:165679..166735-
coding sequence from alignment at scaffold_15:165679..166735-

mRNA sequence

>mRNA_6263 ID=mRNA_6263|Name=jgi.p|Nanoce1779_2|594373|organism=Nannochloropsis oceanica|type=mRNA|length=1057bp
GCGCGGAGGCGAAAGTAAACAAAGAAACAAAGTAAAGGGGCCTCGAAAAT
ATAACGAACTGCCACATAATGCACGCATCCTTAGCGGTGCTGCCTATGTC
CGATCTATCGCTTGCTCCTGCCCCAGTCCGCCTTCTCCCCACGACAATGG
ATATCCAAACCCGGGGTGCAACCTACGACGCACCCGCATTTGAAAATGGC
ATTCCATGCCAGAATGTTGATGAACCGCCCTGTTGTTACCACCATTACAT
CATCAATCCCACTTTCCTTCCGTACAACAGGAGCGAGGAAAGGTTTGTTT
ATTCTGAATTGGAAACAAATAATAAGATGCGACTAGGACCCTTGTCACCT
CCTTTTGAGTGCTTCTTCTCTTTCATTTTTTTTCCCTTCACGTGTGGCTG
CTCATCTAGAGTATTGCTGCGTTCTGGCTATCGACACTTTCCCTTCCTAT
TCTGTGAGGGGCATGAATCATTCTCAGGCAGCATCTTCTGATCCCCCTTC
ATCTTCTCCTCTCGTAACCTATCGGCTAAAATTGCTTTGATTCCGTTCAA
CGGCTGTCTTCTATTGTTGCTCTCTACACGGCAACCCTCCCTCCCTCTTT
CCTTCCCCGTTTTCACACGCCAGAAGGAGAAGAATCACAAAAACCTCCCC
CCTATCCGGACGTCCACCTCCCCGACCTCTTCTTCTGCACTCGTTCGGCC
GTCACACCCTACATCCTCCTTCAGGAACAAACTCATGCCAGGTAGCTCTC
CAAACTTTCTCCGCTCAGGTCCTCGATGTACCCTATCGTTTCCTTACACA
GCACCACCACCTCCTCTCTCTCATCTTCCATCAACTCACTCAAATACGCG
ATACTCTCCGGTAGCATAGCCAGGTATTCCTCTCCCACGCACATAAACGT
CTCTTTAACGGCTTGTAACGCCACAAAACGCACCTCCCAATCCTTGTCTC
TGGTCTTCATGAGCACTTGGTGGTGGTACGGCTTCCACAGCACGTCCTTC
CCGACTGCAAGCGCCATGTGGGCCAAGCAGGGAATGAGCTTCCCGCGAGC
CACCGAG

protein sequence of jgi.p|Nanoce1779_2|594373

>mRNA_6263-protein ID=mRNA_6263-protein|Name=jgi.p|Nanoce1779_2|594373|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MHASLAVLPMSDLSLAPAPVRLLPTTMDIQTRGATYDAPAFENGIPCQNV
DEPPCCYHHYIINPTFLPYNRSEERFVYSELETNNKMRLGPLSPPFECFF
SFIFFPFTCGCSSRVLLRSGYRHFPFLFCEGHESFSGSIF*

mRNA from alignment at scaffold_15:165679..166735-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6263 ID=mRNA_6263|Name=jgi.p|Nanoce1779_2|594373|organism=Nannochloropsis oceanica|type=mRNA|length=1057bp|location=Sequence derived from alignment at scaffold_15:165679..166735- (Nannochloropsis oceanica)
GCGCGGAGGCGAAAGTAAACAAAGAAACAAAGTAAAGGGGCCTCGAAAAT
ATAACGAACTGCCACATAATGCACGCATCCTTAGCGGTGCTGCCTATGTC
CGATCTATCGCTTGCTCCTGCCCCAGTCCGCCTTCTCCCCACGACAATGG
ATATCCAAACCCGGGGTGCAACCTACGACGCACCCGCATTTGAAAATGGC
ATTCCATGCCAGAATGTTGATGAACCGCCCTGTTGTTACCACCATTACAT
CATCAATCCCACTTTCCTTCCGTACAACAGGAGCGAGGAAAGGTTTGTTT
ATTCTGAATTGGAAACAAATAATAAGATGCGACTAGGACCCTTGTCACCT
CCTTTTGAGTGCTTCTTCTCTTTCATTTTTTTTCCCTTCACGTGTGGCTG
CTCATCTAGAGTATTGCTGCGTTCTGGCTATCGACACTTTCCCTTCCTAT
TCTGTGAGGGGCATGAATCATTCTCAGGCAGCATCTTCTGATCCCCCTTC
ATCTTCTCCTCTCGTAACCTATCGGCTAAAATTGCTTTGATTCCGTTCAA
CGGCTGTCTTCTATTGTTGCTCTCTACACGGCAACCCTCCCTCCCTCTTT
CCTTCCCCGTTTTCACACGCCAGAAGGAGAAGAATCACAAAAACCTCCCC
CCTATCCGGACGTCCACCTCCCCGACCTCTTCTTCTGCACTCGTTCGGCC
GTCACACCCTACATCCTCCTTCAGGAACAAACTCATGCCAGGTAGCTCTC
CAAACTTTCTCCGCTCAGGTCCTCGATGTACCCTATCGTTTCCTTACACA
GCACCACCACCTCCTCTCTCTCATCTTCCATCAACTCACTCAAATACGCG
ATACTCTCCGGTAGCATAGCCAGGTATTCCTCTCCCACGCACATAAACGT
CTCTTTAACGGCTTGTAACGCCACAAAACGCACCTCCCAATCCTTGTCTC
TGGTCTTCATGAGCACTTGGTGGTGGTACGGCTTCCACAGCACGTCCTTC
CCGACTGCAAGCGCCATGTGGGCCAAGCAGGGAATGAGCTTCCCGCGAGC
CACCGAG

Coding sequence (CDS) from alignment at scaffold_15:165679..166735-

>mRNA_6263 ID=mRNA_6263|Name=jgi.p|Nanoce1779_2|594373|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_15:165679..166735- (Nannochloropsis oceanica)
ATGCACGCATCCTTAGCGGTGCTGCCTATGTCCGATCTATCGCTTGCTCC
TGCCCCAGTCCGCCTTCTCCCCACGACAATGGATATCCAAACCCGGGGTG
CAACCTACGACGCACCCGCATTTGAAAATGGCATTCCATGCCAGAATGTT
GATGAACCGCCCTGTTGTTACCACCATTACATCATCAATCCCACTTTCCT
TCCGTACAACAGGAGCGAGGAAAGGTTTGTTTATTCTGAATTGGAAACAA
ATAATAAGATGCGACTAGGACCCTTGTCACCTCCTTTTGAGTGCTTCTTC
TCTTTCATTTTTTTTCCCTTCACGTGTGGCTGCTCATCTAGAGTATTGCT
GCGTTCTGGCTATCGACACTTTCCCTTCCTATTCTGTGAGGGGCATGAAT
CATTCTCAGGCAGCATCTTCTGA

Synonyms

Publications