jgi.p|Nanoce1779_2|594357, mRNA_6261 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594357
Unique NamemRNA_6261
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_15:155262..156307 -

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Properties
Property NameValue
TranscriptId594443
TrackFilteredModels2
ProteinId594357
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:155262..156307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594357gene_6261Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594357mRNA_6261-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6261CDS_6261Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6261 ID=mRNA_6261|Name=jgi.p|Nanoce1779_2|594357|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
AAACCAACAGCGAGCAAGCCACGCCACGTCCCTCCTTCATCATCACACCA
TGCCTTCCCGCAAAAGCGTGCGATTCGAGGACTTGGACGACGGCATCGAG
GACGGCGTCTACGGCCTAAAGGTACGTACGGGTAAAGAAAAATCTTCTGC
ATGCATGCTCGTCGTTTTCCTATGGCGCGTAGTGCGAGCCCGGGATTTTG
TATGTCTTGATGCCTCTCTGCGCCCCTCCTCCTATCCTGCCACTGTGTCA
CTCACACCGCCCCACCGCCACCTCTTCCAATCCCATCAAATGGTACAGGG
CATGTTCAACAAGCTCTATGCCCAAGCGACTAGCTACGGCAAGTGGGCCC
GCAGCCACAGCAAGACGGCCTTATCCTGGGGTTTGACCCTCGGCTGGTAT
TTCGCCATAACAACCATTTTGACTGCCATGCCCCTGATGTTGGAGCTACA
AAGAGAGCAAGCAGTGTTGGAGATGGAGAAGGTCCAAGTGAAGGAATTGT
TGGCCCAGGGATACCCGCCTCAAGAGCTTCAACGGATGGGGATGACCTTA
GAGCCGTCCGTGCTGCAGGGAGGGAATGAGAAACAGCGTTAAGTGAGCGA
GGAGTTTGGATGCTTGGAAAGGTGGGAGGCAGGGGAGGAAAGAAGAGGAG
AATGGGCGGTGTATGATATAAGTCGCAGGTAAAGGAGAAGGAGAGTCCAT
GAGAGGGAAAAGGAGGCGGAAGAAGGAGAATGGTCGACAGATAGAGGGAG
AAAGAGAAACGGAAGGAAGGAGAGTGGAAGAGCGAGGTAGGGCTTGGTTG
GTGTACAAAATGATGGGTGAGGTGAGAAGACATGAGGACTAAGACGGACG
AGAGTTGAGCGAGAGAAGGAGAGAAATATCGAGAGAGATAGCGAAAGAGA
AATGGCGAGGGACGATGGGGAGGCACACACACAGACAAAACGTGCCAAGT
C
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protein sequence of jgi.p|Nanoce1779_2|594357

>mRNA_6261-protein ID=mRNA_6261-protein|Name=jgi.p|Nanoce1779_2|594357|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MPSRKSVRFEDLDDGIEDGVYGLKVRTGKEKSSACMLVVFLWRVVRARDF
VCLDASLRPSSYPATVSLTPPHRHLFQSHQMVQGMFNKLYAQATSYGKWA
RSHSKTALSWGLTLGWYFAITTILTAMPLMLELQREQAVLEMEKVQVKEL
LAQGYPPQELQRMGMTLEPSVLQGGNEKQR*
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mRNA from alignment at scaffold_15:155262..156307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6261 ID=mRNA_6261|Name=jgi.p|Nanoce1779_2|594357|organism=Nannochloropsis oceanica|type=mRNA|length=1046bp|location=Sequence derived from alignment at scaffold_15:155262..156307- (Nannochloropsis oceanica)
AAACCAACAGCGAGCAAGCCACGCCACGTCCCTCCTTCATCATCACACCA
TGCCTTCCCGCAAAAGCGTGCGATTCGAGGACTTGGACGACGGCATCGAG
GACGGCGTCTACGGCCTAAAGGTACGTACGGGTAAAGAAAAATCTTCTGC
ATGCATGCTCGTCGTTTTCCTATGGCGCGTAGTGCGAGCCCGGGATTTTG
TATGTCTTGATGCCTCTCTGCGCCCCTCCTCCTATCCTGCCACTGTGTCA
CTCACACCGCCCCACCGCCACCTCTTCCAATCCCATCAAATGGTACAGGG
CATGTTCAACAAGCTCTATGCCCAAGCGACTAGCTACGGCAAGTGGGCCC
GCAGCCACAGCAAGACGGTGCGTGAATGTCTGTATGGGGTAGATCGCAAC
ATGTCCTTCCCACTCCTCGAAGCTCATCCCGCCCTCCTCTCTCCATCCCT
CCCCCCCTCCAGGCCTTATCCTGGGGTTTGACCCTCGGCTGGTATTTCGC
CATAACAACCATTTTGACTGCCATGCCCCTGATGTTGGAGCTACAAAGAG
AGCAAGCAGTGTTGGAGATGGAGAAGGTCCAAGTGAAGGAATTGTTGGCC
CAGGGATACCCGCCTCAAGAGCTTCAACGGATGGGGATGACCTTAGAGCC
GTCCGTGCTGCAGGGAGGGAATGAGAAACAGCGTTAAGTGAGCGAGGAGT
TTGGATGCTTGGAAAGGTGGGAGGCAGGGGAGGAAAGAAGAGGAGAATGG
GCGGTGTATGATATAAGTCGCAGGTAAAGGAGAAGGAGAGTCCATGAGAG
GGAAAAGGAGGCGGAAGAAGGAGAATGGTCGACAGATAGAGGGAGAAAGA
GAAACGGAAGGAAGGAGAGTGGAAGAGCGAGGTAGGGCTTGGTTGGTGTA
CAAAATGATGGGTGAGGTGAGAAGACATGAGGACTAAGACGGACGAGAGT
TGAGCGAGAGAAGGAGAGAAATATCGAGAGAGATAGCGAAAGAGAAATGG
CGAGGGACGATGGGGAGGCACACACACAGACAAAACGTGCCAAGTC
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Coding sequence (CDS) from alignment at scaffold_15:155262..156307-

>mRNA_6261 ID=mRNA_6261|Name=jgi.p|Nanoce1779_2|594357|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_15:155262..156307- (Nannochloropsis oceanica)
GCCTTATCCTGGGGTTTGACCCTCGGCTGGTATTTCGCCATAACAACCAT
TTTGACTGCCATGCCCCTGATGTTGGAGCTACAAAGAGAGCAAGCAGTGT
TGGAGATGGAGAAGGTCCAAGTGAAGGAATTGTTGGCCCAGGGATACCCG
CCTCAAGAGCTTCAACGGATGGGGATGACCTTAGAGCCGTCCGTGCTGCA
GGGAGGGAATGAGAAACAGCGTTAAATGCCTTCCCGCAAAAGCGTGCGAT
TCGAGGACTTGGACGACGGCATCGAGGACGGCGTCTACGGCCTAAAGGTA
CGTACGGGTAAAGAAAAATCTTCTGCATGCATGCTCGTCGTTTTCCTATG
GCGCGTAGTGCGAGCCCGGGATTTTGTATGTCTTGATGCCTCTCTGCGCC
CCTCCTCCTATCCTGCCACTGTGTCACTCACACCGCCCCACCGCCACCTC
TTCCAATCCCATCAAATGGTACAGGGCATGTTCAACAAGCTCTATGCCCA
AGCGACTAGCTACGGCAAGTGGGCCCGCAGCCACAGCAAGACGGCCTTAT
CCTGGGGTTTGACCCTCGGCTGGTATTTCGCCATAACAACCATTTTGACT
GCCATGCCCCTGATGTTGGAGCTACAAAGAGAGCAAGCAGTGTTGGAGAT
GGAGAAGGTCCAAGTGAAGGAATTGTTGGCCCAGGGATACCCGCCTCAAG
AGCTTCAACGGATGGGGATGACCTTAGAGCCGTCCGTGCTGCAGGGAGGG
AATGAGAAACAGCGTTAAATGCCTTCCCGCAAAAGCGTGCGATTCGAGGA
CTTGGACGACGGCATCGAGGACGGCGTCTACGGCCTAAAGGTACGTACGG
GTAAAGAAAAATCTTCTGCATGCATGCTCGTCGTTTTCCTATGGCGCGTA
GTGCGAGCCCGGGATTTTGTATGTCTTGATGCCTCTCTGCGCCCCTCCTC
CTATCCTGCCACTGTGTCACTCACACCGCCCCACCGCCACCTCTTCCAAT
CCCATCAAATGGTACAGGGCATGTTCAACAAGCTCTATGCCCAAGCGACT
AGCTACGGCAAGTGGGCCCGCAGCCACAGCAAGACG
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Synonyms
Publications