jgi.p|Nanoce1779_2|557126, mRNA_6260 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557126
Unique Name	mRNA_6260
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1053
Alignment location	scaffold_15:153879..155286 +

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Properties


Property Name	Value
TranscriptId	557212
Track	FilteredModels2
ProteinId	557126

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:153879..155286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557126	gene_6260	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557126	mRNA_6260-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6260	CDS_6260	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:153879..155286+
coding sequence from alignment at scaffold_15:153879..155286+

mRNA sequence

>mRNA_6260 ID=mRNA_6260|Name=jgi.p|Nanoce1779_2|557126|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
CCCCTCTCTCTCTCTCACACACGCACAGGAGGATAAAATGCTCCGTGCCT
TGGGCCTTGTCCTGCGGTCGCCGACACGGAGACCGACACATTCTTGCCTC
TCTTTCTTCTCTTCTGGATCGTCCGAAGACGCCTACTTGGAATCCTGGCA
ACAAAAGCAGATCCAACCTCCGTCATTCTACGAGCAAGAGGCTCTAAAGC
GGCACTATTTCTATACAGTAGACCTGCAGGGACGCTTGTACCTGGAGGAA
AGCCGGGTGAAAAATCTCACATCTTGCTTGAAGGATGACAAGTTCCTCAA
TTTTTTTTTCCGCCAGATACGCCGCAATGATACGGGCCTCCATACTTCCT
ACCCCTTCATCTCTCCCTGTGGAAAAGAAATGAACTTTATTCTCCCTGCT
GACATGCCTGTCGTCTTCCATGACTTCGTTCAGGGGCCGACGGAGGGAGG
AGAGGATGGAGGGAAGGAGGGAGAGACGGCATTGGTGTATGCGGGGAATC
TGCAGCAAGAGTTTGATCCCTCTTCTGTTTATATCTCCTCGAGGTCGGGA
AGGTTGTATCATCCTCTGAACACCACCAAAAAAAGAAGATTGGCAGCAGC
AGCAGCAGCTGGACTAGAGGGAAAGGAAGGAGAGAGGGATGGAGGGAGGG
GGGGAGGACGGCCTCGGTTTGGTTTGGTCAGATCGCATGTAGGGCTGCTG
TTGTCTGATCGACTGGTTCATACAGAAGAGGATGAAGGTGGTTTAGTATT
GATGTGGGGACGGGTGGGAGGGAAGGAGGACAGGAATGATGGAGAGGAGG
AAGGTTTTATAGTCCGTATGTTGCCCGAGGAGGACGAGCCGGTTTGGGGG
ATGCCTCCTTATTGATTGTTATAAATTGACATGTGTGAGATATATGCACA
GAGAGGAACAAGAAGAATTTTGGTGGGTGATGGCAAGGTTGCTGTTTTGA
ACTCGACTCGTACGACCCGGCAATCAACGGAAATCCGTTTCCTCATTTCC
ATTGCTGTCTTTTTTTAAAAAAATCCTTGACTTGGCACGTTTTGTCTGTG
TGT

protein sequence of jgi.p|Nanoce1779_2|557126

>mRNA_6260-protein ID=mRNA_6260-protein|Name=jgi.p|Nanoce1779_2|557126|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MLRALGLVLRSPTRRPTHSCLSFFSSGSSEDAYLESWQQKQIQPPSFYEQ
EALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTG
LHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALV
YAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKRRLAAAAAAGLEGKEGER
DGGRGGGRPRFGLVRSHVGLLLSDRLVHTEEDEGGLVLMWGRVGGKEDRN
DGEEEGFIVRMLPEEDEPVWGMPPY*

mRNA from alignment at scaffold_15:153879..155286+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6260 ID=mRNA_6260|Name=jgi.p|Nanoce1779_2|557126|organism=Nannochloropsis oceanica|type=mRNA|length=1408bp|location=Sequence derived from alignment at scaffold_15:153879..155286+ (Nannochloropsis oceanica)
CCCCTCTCTCTCTCTCACACACGCACAGGAGGATAAAATGCTCCGTGCCT
TGGGCCTTGTCCTGCGGTCGCCGACACGGAGGTACGTACTTGTTTCGCCG
CCACGTGCCTTCCCTTCTCCATTCCCTCTTTGTATGACAAAAGCGCATCA
AGACCAGCGGCAGTAGCAGCGGTAAAAATTGGAAATGAAGTCGTATATCT
TCTTGGTAACCCACCTTACCGCTCTCCACACTTATGTAAAGTCTTCCCCT
CGCTAGCCAGCTCCTACGCCCTTGCCCGTCCGCCCTCCCTCCCTCACACC
ATTCTTCCTACTCAACTCCACGTTCCTACCAGACCGACACATTCTTGCCT
CTCTTTCTTCTCTTCTGGATCGTCCGAAGACGCCTACTTGGAATCCTGGC
AACAAAAGCAGATCCAACCTCCGTCATTCTACGAGCAAGAGGCTCTAAAG
CGGCACTATTTCTATACAGTAGACCTGCAGGGACGCTTGTACCTGGAGGA
AAGCCGGGTGAAAAATCTCACATCTTGCTTGAAGGATGACAAGGTAGGTG
GTAAGGGAATTAGCGAAGTTTATTTCTGCTGGAAATCGACCCATTACATA
TTGTTCTCGTCATTGACCCTCCCTCCCTTCCCTCTCTTTTCCCGCAGTTC
CTCAATTTTTTTTTCCGCCAGATACGCCGCAATGATACGGGCCTCCATAC
TTCCTACCCCTTCATCTCTCCCTGTGGAAAAGAAATGAACTTTATTCTCC
CTGCTGACATGCCTGTCGTCTTCCATGACTTCGTTCAGGGGCCGACGGAG
GGAGGAGAGGATGGAGGGAAGGAGGGAGAGACGGCATTGGTGTATGCGGG
GAATCTGCAGCAAGAGTTTGATCCCTCTTCTGTTTATATCTCCTCGAGGT
CGGGAAGGTTGTATCATCCTCTGAACACCACCAAAAAAAGAAGATTGGCA
GCAGCAGCAGCAGCTGGACTAGAGGGAAAGGAAGGAGAGAGGGATGGAGG
GAGGGGGGGAGGACGGCCTCGGTTTGGTTTGGTCAGATCGCATGTAGGGC
TGCTGTTGTCTGATCGACTGGTTCATACAGAAGAGGATGAAGGTGGTTTA
GTATTGATGTGGGGACGGGTGGGAGGGAAGGAGGACAGGAATGATGGAGA
GGAGGAAGGTTTTATAGTCCGTATGTTGCCCGAGGAGGACGAGCCGGTTT
GGGGGATGCCTCCTTATTGATTGTTATAAATTGACATGTGTGAGATATAT
GCACAGAGAGGAACAAGAAGAATTTTGGTGGGTGATGGCAAGGTTGCTGT
TTTGAACTCGACTCGTACGACCCGGCAATCAACGGAAATCCGTTTCCTCA
TTTCCATTGCTGTCTTTTTTTAAAAAAATCCTTGACTTGGCACGTTTTGT
CTGTGTGT

Coding sequence (CDS) from alignment at scaffold_15:153879..155286+

>mRNA_6260 ID=mRNA_6260|Name=jgi.p|Nanoce1779_2|557126|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_15:153879..155286+ (Nannochloropsis oceanica)
ATGCTCCGTGCCTTGGGCCTTGTCCTGCGGTCGCCGACACGGAGACCGAC
ACATTCTTGCCTCTCTTTCTTCTCTTCTGGATCGTCCGAAGACGCCTACT
TGGAATCCTGGCAACAAAAGCAGATCCAACCTCCGTCATTCTACGAGCAA
GAGGCTCTAAAGCGGCACTATTTCTATACAGTAGACCTGCAGGGACGCTT
GTACCTGGAGGAAAGCCGGGTGAAAAATCTCACATCTTGCTTGAAGGATG
ACAAGTTCCTCAATTTTTTTTTCCGCCAGATACGCCGCAATGATACGGGC
CTCCATACTTCCTACCCCTTCATCTCTCCCTGTGGAAAAGAAATGAACTT
TATTCTCCCTGCTGACATGCCTGTCGTCTTCCATGACTTCGTTCAGGGGC
CGACGGAGGGAGGAGAGGATGGAGGGAAGGAGGGAGAGACGGCATTGGTG
TATGCGGGGAATCTGCAGCAAGAGTTTGATCCCTCTTCTGTTTATATCTC
CTCGAGGTCGGGAAGGTTGTATCATCCTCTGAACACCACCAAAAAAAGAA
GATTGGCAGCAGCAGCAGCAGCTGGACTAGAGGGAAAGGAAGGAGAGAGG
GATGGAGGGAGGGGGGGAGGACGGCCTCGGTTTGGTTTGGTCAGATCGCA
TGTAGGGCTGCTGTTGTCTGATCGACTGGTTCATACAGAAGAGGATGAAG
GTGGTTTAGTATTGATGTGGGGACGGGTGGGAGGGAAGGAGGACAGGAAT
GATGGAGAGGAGGAAGGTTTTATAGTCCGTATGTTGCCCGAGGAGGACGA
GCCGGTTTGGGGGATGCCTCCTTATTGAATGCTCCGTGCCTTGGGCCTTG
TCCTGCGGTCGCCGACACGGAGACCGACACATTCTTGCCTCTCTTTCTTC
TCTTCTGGATCGTCCGAAGACGCCTACTTGGAATCCTGGCAACAAAAGCA
GATCCAACCTCCGTCATTCTACGAGCAAGAGGCTCTAAAGCGGCACTATT
TCTATACAGTAGACCTGCAGGGACGCTTGTACCTGGAGGAAAGCCGGGTG
AAAAATCTCACATCTTGCTTGAAGGATGACAAGTTCCTCAATTTTTTTTT
CCGCCAGATACGCCGCAATGATACGGGCCTCCATACTTCCTACCCCTTCA
TCTCTCCCTGTGGAAAAGAAATGAACTTTATTCTCCCTGCTGACATGCCT
GTCGTCTTCCATGACTTCGTTCAGGGGCCGACGGAGGGAGGAGAGGATGG
AGGGAAGGAGGGAGAGACGGCATTGGTGTATGCGGGGAATCTGCAGCAAG
AGTTTGATCCCTCTTCTGTTTATATCTCCTCGAGGTCGGGAAGGTTGTAT
CATCCTCTGAACACCACCAAAAAAAGAAGATTGGCAGCAGCAGCAGCAGC
TGGACTAGAGGGAAAGGAAGGAGAGAGGGATGGAGGGAGGGGGGGAGGAC
GGCCTCGGTTTGGTTTGGTCAGATCGCATGTAGGGCTGCTGTTGTCTGAT
CGACTGGTTCATACAGAAGAGGATGAAGGTGGTTTAGTATTGATGTGGGG
ACGGGTGGGAGGGAAGGAGGACAGGAATGATGGAGAGGAGGAAGGTTTTA
TAGTCCGTATGTTGCCCGAGGAGGACGAGCCGGTTTGGGGGATGCCTCCT
TATTGAATGCTCCGTGCCTTGGGCCTTGTCCTGCGGTCGCCGACACGGAG
ACCGACACATTCTTGCCTCTCTTTCTTCTCTTCTGGATCGTCCGAAGACG
CCTACTTGGAATCCTGGCAACAAAAGCAGATCCAACCTCCGTCATTCTAC
GAGCAAGAGGCTCTAAAGCGGCACTATTTCTATACAGTAGACCTGCAGGG
ACGCTTGTACCTGGAGGAAAGCCGGGTGAAAAATCTCACATCTTGCTTGA
AGGATGACAAGTTCCTCAATTTTTTTTTCCGCCAGATACGCCGCAATGAT
ACGGGCCTCCATACTTCCTACCCCTTCATCTCTCCCTGTGGAAAAGAAAT
GAACTTTATTCTCCCTGCTGACATGCCTGTCGTCTTCCATGACTTCGTTC
AGGGGCCGACGGAGGGAGGAGAGGATGGAGGGAAGGAGGGAGAGACGGCA
TTGGTGTATGCGGGGAATCTGCAGCAAGAGTTTGATCCCTCTTCTGTTTA
TATCTCCTCGAGGTCGGGAAGGTTGTATCATCCTCTGAACACCACCAAAA
AAAGAAGATTGGCAGCAGCAGCAGCAGCTGGACTAGAGGGAAAGGAAGGA
GAGAGGGATGGAGGGAGGGGGGGAGGACGGCCTCGGTTTGGTTTGGTCAG
ATCGCATGTAGGGCTGCTGTTGTCTGATCGACTGGTTCATACAGAAGAGG
ATGAAGGTGGTTTAGTATTGATGTGGGGACGGGTGGGAGGGAAGGAGGAC
AGGAATGATGGAGAGGAGGAAGGTTTTATAGTCCGTATGTTGCCCGAGGA
GGACGAGCCGGTTTGGGGGATGCCTCCTTATTGA

Synonyms

Publications