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Properties
| Property Name | Value |
|---|
| TranscriptId | 88197 |
| Track | FilteredModels2 |
| ProteinId | 88111 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:151995..154442 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6259 ID=mRNA_6259|Name=jgi.p|Nanoce1779_2|88111|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp
GCTAATTCCCTTACCACCTACCTTGTCATCCTTCAAGCAAGATGTGAGAT
TTTTCACCCGGCTTTCCTCCAGGTACAAGCGTCCCTGCAGGTCTACTGTA
TAGAAATAGTGCCGCTTTAGAGCCTCTTGCTCGTAGAATGACGGAGGTTG
GATCTGCTTTTGTTGCCAGGATTCCAAGTAGGCGTCTTCGGACGATCCAG
AAGAGAAGAAAGAGAGGCAAGAATGTGTCGGTCTGGTAGGAACGTGGAGT
TGAGTAGGAAGAATGGTGTGAGGGAGGGAGGGCGGACGGGCAAGGGCGTA
GGAGCTGGCTAGCGAGGGGAAGACTTTACATAAGTGTGGAGAGCGGTAAG
GTGGGTTACCAAGAAGATATACGACTTCATTTCCAATTTTTACCGCTGCT
ACTGCCGCTGGTCTTGATGCGCTTTTGTCATACAAAGAGGGAATGGAGAA
GGGAAGGCACGTGGCGGCGAAACAAGTACGTACCTCCGTGTCGGCGACCG
CAGGACAAGGCCCAAGGCACGGAGCATTTTATCCTCCTGTGCGTGTGTGA
GAGAGAGAGAGGGGTGAGCGCCATTGTTCGTGGTTTGGTCCTGAATATAG
GAGAAAAACTCTACAACAATAAACAATGCCAAGCAGACCAACCTCCTCAC
CCTACCTCTAACCAGTCCTCTCCCCCTCCTCTCTCGACTCGACACAGCGC
CAGAACGCACAACAAGAGCCCGACGCACATATGACCTCTTCCTCGGTCGG
CCCACGCTTCGGACAGGCTGTCATAGGTCCTCCAGGGGCGGGAAAGACGA
CTTACTGCCACGGCATGGCCCGCTTCCTAGCCGCACGCGGACGTGCCGTG
GCGGTGGTCAATCTAGACCCTGCAAATGACCGGCTGCCGTACCCAGTTGA
TATTGATGTGTCGGAGCTCGTCAATTTGGCGGACGTAATGGAAACACAGA
ACTTGGGGCCGAATGGCGGCTTGATGTATTGCATGGAGTATGTCGAGCAG
AATCTGGACTGGCTTTTTCAGCGCTTGGAGGCGTTGCAGGGGAGGCGGTA
TATGCTGTTAGACTTCCCCGGACAGGTGGAGCTGTACACGCACGGAAATA
CGGTGCAACGACTCTTAAAGCGCTTGGAGCAATGGGGATGTCGCCTGACG
ACCGTGCACCTCATCGATGCCCATCACTGCAGCGATGCCGGTAAATTTAT
CTCGGCGACATTGATCTCTCTCACGACCATGGTGCGGCTAGCACTACCTC
ACGTGAATGTGTTAAGCAAAATTGACTTGATTGAAAGCTGCGGTCGTTTG
GCTTTCGATTTGAATTTTTATACTGATGTTATGGAGGTCCGAAATTTGTT
GCCGTACTTGGAGGCAAGACCCATGGATCCACGCAAGAAAGATAATGAGG
AGGATGAAATGGAGGAAGAGGTGGGGGAGGAGGTGGAGGATGGGGAGGGG
CAGATGAGGGGAGGTATGGATAGGATGTTTGCAAGGCGGTATCATAAACT
GAATGAGGCCATGTGTGAATTAATCGAGGACTATTCATTGGTGGCGTTTC
ATCCGTTGAACATCGAGGACGGAAAATGCATAGCTCGTGTCTTGGCGGTG
GTTGATAAATGCAACGGGTATTTGTTAGGGGCAGAAGAGAGGGCAAAGGA
GGGAGGCGGGGAGGCGGCATTGCTGTCGACGCTGGCCGGGTTGGCGTTTC
GGGCACAGCCGGATGCAGACCGCGTCAAGGATGTTCAGGATCGATATATG
GATAAGGAGGATGGGGTGGAGAGCTAAGACTGTGTATGTATCTTATTTCC
AACAAAATGATTAAATCAAGTAACCATCTGATCGAGGCAGATTTTTGGAT
TGTTTGGAATGACATTGTTTTTCAACAAGTATTACTTGTTCTTTACTCTC
TGACTTTTTATATATGATGAGGGAAAATAAAATAATTAAGTCCTAAAATT
GTAAAATCGAAGAAATCAATCAAATTAACAAAAACAATGAAGAAATAATG
GCC back to topprotein sequence of jgi.p|Nanoce1779_2|88111 >mRNA_6259-protein ID=mRNA_6259-protein|Name=jgi.p|Nanoce1779_2|88111|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MTSSSVGPRFGQAVIGPPGAGKTTYCHGMARFLAARGRAVAVVNLDPAND
RLPYPVDIDVSELVNLADVMETQNLGPNGGLMYCMEYVEQNLDWLFQRLE
ALQGRRYMLLDFPGQVELYTHGNTVQRLLKRLEQWGCRLTTVHLIDAHHC
SDAGKFISATLISLTTMVRLALPHVNVLSKIDLIESCGRLAFDLNFYTDV
MEVRNLLPYLEARPMDPRKKDNEEDEMEEEVGEEVEDGEGQMRGGMDRMF
ARRYHKLNEAMCELIEDYSLVAFHPLNIEDGKCIARVLAVVDKCNGYLLG
AEERAKEGGGEAALLSTLAGLAFRAQPDADRVKDVQDRYMDKEDGVES* back to topmRNA from alignment at scaffold_15:151995..154442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6259 ID=mRNA_6259|Name=jgi.p|Nanoce1779_2|88111|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at scaffold_15:151995..154442- (Nannochloropsis oceanica)
GCTAATTCCCTTACCACCTACCTTGTCATCCTTCAAGCAAGATGTGAGAT
TTTTCACCCGGCTTTCCTCCAGGTACAAGCGTCCCTGCAGGTCTACTGTA
TAGAAATAGTGCCGCTTTAGAGCCTCTTGCTCGTAGAATGACGGAGGTTG
GATCTGCTTTTGTTGCCAGGATTCCAAGTAGGCGTCTTCGGACGATCCAG
AAGAGAAGAAAGAGAGGCAAGAATGTGTCGGTCTGGTAGGAACGTGGAGT
TGAGTAGGAAGAATGGTGTGAGGGAGGGAGGGCGGACGGGCAAGGGCGTA
GGAGCTGGCTAGCGAGGGGAAGACTTTACATAAGTGTGGAGAGCGGTAAG
GTGGGTTACCAAGAAGATATACGACTTCATTTCCAATTTTTACCGCTGCT
ACTGCCGCTGGTCTTGATGCGCTTTTGTCATACAAAGAGGGAATGGAGAA
GGGAAGGCACGTGGCGGCGAAACAAGTACGTACCTCCGTGTCGGCGACCG
CAGGACAAGGCCCAAGGCACGGAGCATTTTATCCTCCTGTGCGTGTGTGA
GAGAGAGAGAGGGGTGAGCGCCATTGTTCGTGGTTTGGTCCTGAATATAG
GAGAAAAACTCTACAACAATAAACAATGCCAAGCAGACCAACCTCCTCAC
CCTACCTCTAACCAGTCCTCTCCCCCTCCTCTCTCGACTCGACACAGCGC
CAGAACGCACAACAAGAGCCCGACGCACATATGACCTCTTCCTCGGTCGG
CCCACGCTTCGGACAGGCTGTCATAGGTCCTCCAGGGGCGGGAAAGACGA
CTTACTGCCACGGCATGGCCCGCTTCCTAGCCGCACGCGGACGTGCCGTG
GCGGTGGTCAATCTAGACCCTGCAAATGACCGGCTGCCGTACCCAGTTGA
TATTGATGTGTCGGAGCTCGTCAATTTGGCGGTACGTCTCTCTCCTTCAG
TCCTCAAGGGATGGGAGAACGCGTTAAGAGGGAGTGGGGAGTCGGGGTTG
AGGTGGGAGAGGAGGGATGAAATTGATTGACTCAGCGATCTCCCTGTCCG
CTCCCCCTCTCCTCACCAAAGGACGTAATGGAAACACAGAACTTGGGGCC
GAATGGCGGCTTGATGTATTGCATGGAGTATGTCGAGCAGAATCTGGACT
GGCTTTTTCAGCGCTTGGAGGCGTTGCAGGGGAGGCGGTATATGCTGTTA
GACTTCCCCGGACAGGTACGTGTCTAGGTGGAGGCATGGAGTATATATGG
AGGGAGAGGATATCCTTATCTTTTTATTCAGACCTGTTTGCCCTTATCTA
GCCCATCGATCATTCTCATGGCGCTTCCCCTCCCTCCTGTCCCTCCCTTC
ATCCCTCCCTTTCATCCATTTTTTTTTCACGCCTTCAATGCAGGTGGAGC
TGTACACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGCAA
TGGGGATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGCAG
GTACGTGTGTGACTCACCTGCCTTCTCTCTATTATGTGGGGCTGTTTATC
ATTTCCCCTCCTTCCAGCCTTCCTACCCACTCCGAGTTTATTCATTGTCC
CTTTTTTTCTTGCCAATGACCACGCAGCGATGCCGGTAAATTTATCTCGG
CGACATTGATCTCTCTCACGACCATGGTGCGGCTAGCACTACCTCACGTG
AATGTGTTAAGCAAAATTGACTTGATTGAAAGCTGCGGTCGTTTGGCTTT
CGATTTGAATTTTTATACTGATGTTATGGAGGTCCGAAATTTGTTGCCGT
ACTTGGAGGCAAGACCCATGGATCCACGCAAGAAAGATAATGAGGAGGAT
GAAATGGAGGAAGAGGTGGGGGAGGAGGTGGAGGATGGGGAGGGGCAGAT
GAGGGGAGGTATGGATAGGATGTTTGCAAGGCGGTATCATAAACTGAATG
AGGCCATGTGTGAATTAATCGAGGACTATTCATTGGTGGCGTTTCATCCG
TTGAACATCGAGGACGGAAAATGCATAGCTCGTGTCTTGGCGGTGGTTGA
TAAATGCAACGGGTATTTGTTAGGGGCAGAAGAGAGGGCAAAGGAGGGAG
GCGGGGAGGCGGCATTGCTGTCGACGCTGGCCGGGTTGGCGTTTCGGGCA
CAGCCGGATGCAGACCGCGTCAAGGATGTTCAGGATCGATATATGGATAA
GGAGGATGGGGTGGAGAGCTAAGACTGTGTATGTATCTTATTTCCAACAA
AATGATTAAATCAAGTAACCATCTGATCGAGGCAGATTTTTGGATTGTTT
GGAATGACATTGTTTTTCAACAAGTATTACTTGTTCTTTACTCTCTGACT
TTTTATATATGATGAGGGAAAATAAAATAATTAAGTCCTAAAATTGTAAA
ATCGAAGAAATCAATCAAATTAACAAAAACAATGAAGAAATAATGGCC back to topCoding sequence (CDS) from alignment at scaffold_15:151995..154442- >mRNA_6259 ID=mRNA_6259|Name=jgi.p|Nanoce1779_2|88111|organism=Nannochloropsis oceanica|type=CDS|length=4188bp|location=Sequence derived from alignment at scaffold_15:151995..154442- (Nannochloropsis oceanica)
CGATGCCGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGG
TGCGGCTAGCACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATT
GAAAGCTGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTAT
GGAGGTCCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCAC
GCAAGAAAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAG
GTGGAGGATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGC
AAGGCGGTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACT
ATTCATTGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATA
GCTCGTGTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGC
AGAAGAGAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGC
TGGCCGGGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGAT
GTTCAGGATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGTGGA
GCTGTACACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGC
AATGGGGATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGC
AGGACGTAATGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTAT
TGCATGGAGTATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGA
GGCGTTGCAGGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGATGA
CCTCTTCCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTCCA
GGGGCGGGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCCGC
ACGCGGACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCGGC
TGCCGTACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCGCGA
TGCCGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGGTGC
GGCTAGCACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATTGAA
AGCTGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTATGGA
GGTCCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCACGCA
AGAAAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAGGTG
GAGGATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGCAAG
GCGGTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACTATT
CATTGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATAGCT
CGTGTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGCAGA
AGAGAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGCTGG
CCGGGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGATGTT
CAGGATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGTGGAGCT
GTACACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGCAAT
GGGGATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGCAGG
ACGTAATGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATTGC
ATGGAGTATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAGGC
GTTGCAGGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGATGACCT
CTTCCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTCCAGGG
GCGGGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCCGCACG
CGGACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCGGCTGC
CGTACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCGCGATGC
CGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGGTGCGGC
TAGCACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATTGAAAGC
TGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTATGGAGGT
CCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCACGCAAGA
AAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAGGTGGAG
GATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGCAAGGCG
GTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACTATTCAT
TGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATAGCTCGT
GTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGCAGAAGA
GAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGCTGGCCG
GGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGATGTTCAG
GATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGTGGAGCTGTA
CACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGCAATGGG
GATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGCAGGACG
TAATGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATTGCATG
GAGTATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAGGCGTT
GCAGGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGATGACCTCTT
CCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTCCAGGGGCG
GGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCCGCACGCGG
ACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCGGCTGCCGT
ACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCGCGATGCCGG
TAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGGTGCGGCTAG
CACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATTGAAAGCTGC
GGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTATGGAGGTCCG
AAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCACGCAAGAAAG
ATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAGGTGGAGGAT
GGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGCAAGGCGGTA
TCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACTATTCATTGG
TGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATAGCTCGTGTC
TTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGCAGAAGAGAG
GGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGCTGGCCGGGT
TGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGATGTTCAGGAT
CGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGTGGAGCTGTACAC
GCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGCAATGGGGAT
GTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGCAGGACGTAA
TGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATTGCATGGAG
TATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAGGCGTTGCA
GGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGATGACCTCTTCCT
CGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTCCAGGGGCGGGA
AAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCCGCACGCGGACG
TGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCGGCTGCCGTACC
CAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCG back to top
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