jgi.p|Nanoce1779_2|594348, mRNA_6258 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594348
Unique Name	mRNA_6258
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	869
Alignment location	scaffold_15:148585..150321 -

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Properties


Property Name	Value
TranscriptId	594434
Track	FilteredModels2
ProteinId	594348

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:148585..150321 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594348	gene_6258	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594348	mRNA_6258-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6258	CDS_6258	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:148585..150321-
coding sequence from alignment at scaffold_15:148585..150321-

mRNA sequence

>mRNA_6258 ID=mRNA_6258|Name=jgi.p|Nanoce1779_2|594348|organism=Nannochloropsis oceanica|type=mRNA|length=869bp
GCAGAGGTGGAGGCGTTGTGTGAGCATTATTACCAAGAGCGCATTCCCCC
TCTGGTCATCGACGAGCCTCCAGGGGCAGTGGCGACTTTGATTCCCGCCC
ATTTCCATCACACTCTCTTCGAGATTCTCAAGAACGCATTCAAAGCGACT
GTTGAAAGCGCCGTACGACGGAATTTGAACAGCATGCCGGCAATCAAAGT
CAGGATCTTCCCGGGGAAAGAAGAAGTCTGCATCCGGGTACGTGACTACG
GCGATGGCATGTCCCTCCTCACAATGGCCAAAGCCACAGAGTATCTCTTC
ACTTCCGCTGCCGATTATGAGGTGGAGCAACAGCGGCAGCAGCAGAGCTA
CCAGCCGACTACGGAACCTATGCAGGGGATGGGTATCGGGCTCCCCGTCT
CGAGGCTGTACGCCCGCCACTGGGGCGGAGACATCCGGGTCATCTCCGTG
CAAGGATGGGGGACGGACGTGGCCATTTACTTGTCCCGCAAGGACTTGCC
AGAGCACATTCCCATCCGGGTATTTGACTAAAGAAGGAGGGGAGGGGAAG
GGGTCAGGGAGGGGGGGCTATGGAAAATGATGCTTCGTTTGGAGATAGAT
TAGATTGAAGGTGTGCAGTTGGGGGGAGGGCGAGGGATTGGTGAAGAGAA
AGGGAAGGGGGGAAAGGTAGAGAATGCTGTATTTTGTAGATATAAGTGAT
GGCCTTCGTGTCTTGTGTGGTGTAGCTCTTCCCTACGATGGACGTGGGGG
TGTAGGAGTGTCTTGATGTTTTCGACGTTTTAGATGTTTCTTGGAATCGG
TTCGTGTCTGTGTCTGATTTAATGTGGCTATGTCCAAAAAGACAGGGGAA
GAGGGGAAGGAGGGTGGGG

protein sequence of jgi.p|Nanoce1779_2|594348

>mRNA_6258-protein ID=mRNA_6258-protein|Name=jgi.p|Nanoce1779_2|594348|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQ
RQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYL
SRKDLPEHIPIRVF

mRNA from alignment at scaffold_15:148585..150321-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6258 ID=mRNA_6258|Name=jgi.p|Nanoce1779_2|594348|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_15:148585..150321- (Nannochloropsis oceanica)
GCAGAGGTGGAGGCGTTGTGTGAGCATTATTACCAAGGTAAACCCCCCTC
CCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCACTCGCTCGCTCCCTTCCTCCCTCCCTTCC
TCCCTTGGGGTCGGTGGCCAAGGGACTGTGCGGGCTCCTTACGTCCTCCA
CTACACCCTCCTTCTCTCCCTCCCTTCTTGCCTCCCTCTCTCCCTACCTT
CTCATCCTAGGGCTTGGATTTTTTCCACCACACGCTCTGCAAAGTTCTCA
AGAAGCTCCCTCCCCCCCACCCCCCACCCTCCCTCCCACCTTCCAGAGCG
CATTCCCCCTCTGGTCATCGACGAGCCTCCAGGGGCAGTGGCGACTTTGA
TTCCCGCCCATTTCCATCACACTCTCTTCGAGATTCTCAAGAACGCATTC
AAAGCGACTGTTGAAAGCGCCGTACGACGGAATTTGAACAGCATGCCGGC
AATCAAAGTCAGGGTTCGTACGTCCTCTTTCCCTCACATCCTTCCCTTTC
CTTTCTACCCCCCGTCTGGTCCCCCGTCCCCTTCGTTTTTTGAATTGTAT
GCCTGCTATCACAGGAAGGTTGCCTTTTATCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGCCCCAGAGTTCTGCCTTCC
CTTTTATCCCCCGTCAACCCCTAACCATCCTCCACTTCTCCTTCCTCCTT
TCCCCCTCCATCTTTTTTTTTTTTTTTTTTTCCTGTTTTTCGCCTCCTTC
GTCGCCCTATCGTCGATTTTGACAAGCACCTCCACCTCTCCCCCCCCTCT
CGGTCCTTCCCCTTTCCCTCCCCCTCTCCCTCCAATAGATCTTCCCGGGG
AAAGAAGAAGTCTGCATCCGGGTACGTGACTACGGCGATGGCATGTCCCT
CCTCACAATGGCCAAAGCCACAGAGTATCTCTTCACTTCCGCTGCCGATT
ATGAGGTGGAGCAACAGCGGCAGCAGCAGAGCTACCAGCCGACTACGGAA
CCTATGCAGGGGATGGGTATCGGGCTCCCCGTCTCGAGGCTGTACGCCCG
CCACTGGGGCGGAGGTGAGGTAGAAGGGAAGGAGGGAGGGAAAGGAGATG
CATGCGTACATCCTCCACGAATCTTCTTTCAACTTACTTCATCGTCCCTG
TCCCCCCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTAGAC
ATCCGGGTCATCTCCGTGCAAGGATGGGGGACGGACGTGGCCATTTACTT
GTCCCGCAAGGACTTGCCAGAGCACATTCCCATCCGGGTATTTGACTAAA
GAAGGAGGGGAGGGGAAGGGGTCAGGGAGGGGGGGCTATGGAAAATGATG
CTTCGTTTGGAGATAGATTAGATTGAAGGTGTGCAGTTGGGGGGAGGGCG
AGGGATTGGTGAAGAGAAAGGGAAGGGGGGAAAGGTAGAGAATGCTGTAT
TTTGTAGATATAAGTGATGGCCTTCGTGTCTTGTGTGGTGTAGCTCTTCC
CTACGATGGACGTGGGGGTGTAGGAGTGTCTTGATGTTTTCGACGTTTTA
GATGTTTCTTGGAATCGGTTCGTGTCTGTGTCTGATTTAATGTGGCTATG
TCCAAAAAGACAGGGGAAGAGGGGAAGGAGGGTGGGG

Coding sequence (CDS) from alignment at scaffold_15:148585..150321-

>mRNA_6258 ID=mRNA_6258|Name=jgi.p|Nanoce1779_2|594348|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_15:148585..150321- (Nannochloropsis oceanica)
ACATCCGGGTCATCTCCGTGCAAGGATGGGGGACGGACGTGGCCATTTAC
TTGTCCCGCAAGGACTTGCCAGAGCACATTCCCATCCGGGTATTTGAATC
TTCCCGGGGAAAGAAGAAGTCTGCATCCGGGTACGTGACTACGGCGATGG
CATGTCCCTCCTCACAATGGCCAAAGCCACAGAGTATCTCTTCACTTCCG
CTGCCGATTATGAGGTGGAGCAACAGCGGCAGCAGCAGAGCTACCAGCCG
ACTACGGAACCTATGCAGGGGATGGGTATCGGGCTCCCCGTCTCGAGGCT
GTACGCCCGCCACTGGGGCGGAGATGCCGGCAATCAAAGTCAGGACATCC
GGGTCATCTCCGTGCAAGGATGGGGGACGGACGTGGCCATTTACTTGTCC
CGCAAGGACTTGCCAGAGCACATTCCCATCCGGGTATTTGAATCTTCCCG
GGGAAAGAAGAAGTCTGCATCCGGGTACGTGACTACGGCGATGGCATGTC
CCTCCTCACAATGGCCAAAGCCACAGAGTATCTCTTCACTTCCGCTGCCG
ATTATGAGGTGGAGCAACAGCGGCAGCAGCAGAGCTACCAGCCGACTACG
GAACCTATGCAGGGGATGGGTATCGGGCTCCCCGTCTCGAGGCTGTACGC
CCGCCACTGGGGCGGAGATGCCGGCAATCAAAGTCAGGACATCCGGGTCA
TCTCCGTGCAAGGATGGGGGACGGACGTGGCCATTTACTTGTCCCGCAAG
GACTTGCCAGAGCACATTCCCATCCGGGTATTTGAATCTTCCCGGGGAAA
GAAGAAGTCTGCATCCGGGTACGTGACTACGGCGATGGCATGTCCCTCCT
CACAATGGCCAAAGCCACAGAGTATCTCTTCACTTCCGCTGCCGATTATG
AGGTGGAGCAACAGCGGCAGCAGCAGAGCTACCAGCCGACTACGGAACCT
ATGCAGGGGATGGGTATCGGGCTCCCCGTCTCGAGGCTGTACGCCCGCCA
CTGGGGCGGAGATGCCGGCAATCAAAGTCAGG

Synonyms

Publications