jgi.p|Nanoce1779_2|594344, mRNA_6257 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594344
Unique NamemRNA_6257
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_15:146430..147429 -

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Properties
Property NameValue
TranscriptId594430
TrackFilteredModels2
ProteinId594344
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:146430..147429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594344gene_6257Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594344mRNA_6257-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6257CDS_6257Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Nanoce1779_2|594344|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
CAGACGAACGACACATCTATGGTAAGCGACCAGGTAACGTTGCCACCACC
ATCACCGGTCCCACGGCCTGTCGCTGGTGCAATCATCACGAATGCTCCGC
CATCCGGTACTCCCAGCAGCAGCATGACCCTGGCACCTACCCCATTAGCA
GCTGCTGCAGTCTCAACGGCGTGTGTTAACCATCTCTCACCACCACTACT
GCCCGCGGGAGCGACCGGAGCGACCCCGCAAACATGTTTGAAGGAGGCAG
CAAGCTCAGTTGATATGCTCGCATCGGAATGGCTCCTTTCCTTGGCCGCC
GCTCCTGTATGTCAGCAGCCGCCACACAAGCCTTCATGCGAAATGGTGCA
CAGTAGCAGGGGCATGAGTGGCAGTTGTAGCGGCAGTATTTCGGTATGCG
TCTGTTTCCCCCCACTTTCTTTTCTCTCAATGCCCTTCGGACCAAGAAAA
AACAAGCATCCAACACGTCCTTTCCTCTTTTTCTCTTGATCAAACCAAAT
ACAGGAATCAACGCAACCACCTACTGACACTGGAAGTGTTGCTCACGCTG
CGAATACTGCTGATTCTCCTCCCCCTGCTCCTGCTGCTGCTGGTAGCGCT
TCTGGCTCCCCTTACTTGTCCACCATTCCAGCAGCGGCTGTCGCATTGCC
TTCGCCCTTGCCACTCTCATACACGACCTCATCCTCTTTCTTTCCCCCGT
CCTTCTCCTCTTCCTCCTCCCACTGCCCCTCCACATCTTTTTCACCGACT
TCAGTCCTCTTGACAGCCGCGGCAGCAATGAAGGCCTCCCCAACAGGAAA
TGCAATATCGTCTACAAGAACAAAGATGACCACCAAGTCAGGCAACAAAT
CCAAAAGCAGCAGCCACAAACCATTGCTCTCCCCTTCTTCTCTTCCTCCT
CCTCCCCCTCCAACGCCCACCCTCAACTCAGCACAATCTTGGCAGTACCC
GCAACAGCAGCAACACCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|594344

>mRNA_6257-protein ID=mRNA_6257-protein|Name=jgi.p|Nanoce1779_2|594344|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MVSDQVTLPPPSPVPRPVAGAIITNAPPSGTPSSSMTLAPTPLAAAAVST
ACVNHLSPPLLPAGATGATPQTCLKEAASSVDMLASEWLLSLAAAPVCQQ
PPHKPSCEMVHSSRGMSGSCSGSISVCVCFPPLSFLSMPFGPRKNKHPTR
PFLFFS*
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mRNA from alignment at scaffold_15:146430..147429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Nanoce1779_2|594344|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp|location=Sequence derived from alignment at scaffold_15:146430..147429- (Nannochloropsis oceanica)
CAGACGAACGACACATCTATGGTAAGCGACCAGGTAACGTTGCCACCACC
ATCACCGGTCCCACGGCCTGTCGCTGGTGCAATCATCACGAATGCTCCGC
CATCCGGTACTCCCAGCAGCAGCATGACCCTGGCACCTACCCCATTAGCA
GCTGCTGCAGTCTCAACGGCGTGTGTTAACCATCTCTCACCACCACTACT
GCCCGCGGGAGCGACCGGAGCGACCCCGCAAACATGTTTGAAGGAGGCAG
CAAGCTCAGTTGATATGCTCGCATCGGAATGGCTCCTTTCCTTGGCCGCC
GCTCCTGTATGTCAGCAGCCGCCACACAAGCCTTCATGCGAAATGGTGCA
CAGTAGCAGGGGCATGAGTGGCAGTTGTAGCGGCAGTATTTCGGTATGCG
TCTGTTTCCCCCCACTTTCTTTTCTCTCAATGCCCTTCGGACCAAGAAAA
AACAAGCATCCAACACGTCCTTTCCTCTTTTTCTCTTGATCAAACCAAAT
ACAGGAATCAACGCAACCACCTACTGACACTGGAAGTGTTGCTCACGCTG
CGAATACTGCTGATTCTCCTCCCCCTGCTCCTGCTGCTGCTGGTAGCGCT
TCTGGCTCCCCTTACTTGTCCACCATTCCAGCAGCGGCTGTCGCATTGCC
TTCGCCCTTGCCACTCTCATACACGACCTCATCCTCTTTCTTTCCCCCGT
CCTTCTCCTCTTCCTCCTCCCACTGCCCCTCCACATCTTTTTCACCGACT
TCAGTCCTCTTGACAGCCGCGGCAGCAATGAAGGCCTCCCCAACAGGAAA
TGCAATATCGTCTACAAGAACAAAGATGACCACCAAGTCAGGCAACAAAT
CCAAAAGCAGCAGCCACAAACCATTGCTCTCCCCTTCTTCTCTTCCTCCT
CCTCCCCCTCCAACGCCCACCCTCAACTCAGCACAATCTTGGCAGTACCC
GCAACAGCAGCAACACCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at scaffold_15:146430..147429-

>mRNA_6257 ID=mRNA_6257|Name=jgi.p|Nanoce1779_2|594344|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_15:146430..147429- (Nannochloropsis oceanica)
ATGGTAAGCGACCAGGTAACGTTGCCACCACCATCACCGGTCCCACGGCC
TGTCGCTGGTGCAATCATCACGAATGCTCCGCCATCCGGTACTCCCAGCA
GCAGCATGACCCTGGCACCTACCCCATTAGCAGCTGCTGCAGTCTCAACG
GCGTGTGTTAACCATCTCTCACCACCACTACTGCCCGCGGGAGCGACCGG
AGCGACCCCGCAAACATGTTTGAAGGAGGCAGCAAGCTCAGTTGATATGC
TCGCATCGGAATGGCTCCTTTCCTTGGCCGCCGCTCCTGTATGTCAGCAG
CCGCCACACAAGCCTTCATGCGAAATGGTGCACAGTAGCAGGGGCATGAG
TGGCAGTTGTAGCGGCAGTATTTCGGTATGCGTCTGTTTCCCCCCACTTT
CTTTTCTCTCAATGCCCTTCGGACCAAGAAAAAACAAGCATCCAACACGT
CCTTTCCTCTTTTTCTCTTGA
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Synonyms
Publications