jgi.p|Nanoce1779_2|631422, mRNA_6256 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631422
Unique Name	mRNA_6256
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2230
Alignment location	scaffold_15:142798..145517 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631508
Track	FilteredModels2
ProteinId	631422

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:142798..145517 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631422	gene_6256	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631422	mRNA_6256-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6256	CDS_6256	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:142798..145517-
coding sequence from alignment at scaffold_15:142798..145517-

mRNA sequence

>mRNA_6256 ID=mRNA_6256|Name=jgi.p|Nanoce1779_2|631422|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp
AACAACAACAACAACAACAACGAGAAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGGAGGGGTGGATGCAGCAGGGAGGGTGGCTAAAAATAT
GACTTTGGATGAATTGCGTGAGTATTTTGACAAGCCCATTGAAGAGGCTG
CACGCGCCATTGGTGTTTGCTCGACGTTACTGAAGAAAATATGTCGGAAA
TATCACATAAAACGGTGGCCATACAGGCAGGTGAAAAGTTTGGATAGGAC
CATCGAGTGCTTAAAGCTCGCGGCAGAAAATGCAGGGAAGGGCGGCGGAG
GAGGGGGAGGGGGGGAGGGGGGACAGGGAGGAAGGCAAGACTCAGTGGAG
GAAGGTCGGTTGTTGAGGCAGATAAAGGTGTTGGAGGCACGGAGAGAGGA
ACTGATCACTCATTCGGCAAATCCGGGGTCTACACAGCCGCCGGGAATTG
AGGAGGGAGGAAAGGAGGGTAGGGGGTTGTGTTTGGAGTTAACGAGTCCG
TGTAGTCGCCGCATGCAGAGCCCGACGGTGGGTCTATCTTGTTCATTTTC
TTCGTCATCCTTGACCGGGCCGCTTCCGCCTGCCGCCTCTGGCACGAGTG
GTCAGAAAAATAAGCGGAAGGGTCTGGAGGGCGCAAGTTGTGGCAGGAGC
AACAACAGCAACAGCAGCAGCAGTTGGAAGAGAGTGCGTATGGAGGAGGA
GGAGGGACAGAGACGCAGGGTACTGGAGCAGCAGCAGCGGCAGCAGCAGC
GGGGGCAATAGGAGGAGGAGGGATGGAGAGAGTCGGTATAAATATTGATG
CCCTTGCGAGAAACGGATTTGTGCAGCAGATGGCGCTGGGGCAAGCCCAA
GGGATGGGAGCCTCCTTCCCTCCTCCCTCCTTTCCCGTGCTTCCTCTGAC
CTCCCTGGCTCCAGCAGCCGGTGGATACTCTGGAGTGATGTCGCCGCCGC
ACTTGCAGCAGCAGCAACTACAAGAGCTCTTCCAGCAACAATTTTACATG
TATATGCTTGCCCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACA
ACAAGAATCACTGAAGCACAGCCATGCAGCTCCCACCACCAGCATCTTGA
TTGCTCGTGGCGGCAGCAGCAGCAGCAGCGGTGGCAGTGGTGGCAAGAAG
AGGGCGACGGGTGTGGAAGAGGCCTTGCAGAGGGACAAGGAGAGCATGAA
TCTACTGCAGTTACAAGCCCGAAAGGTAGCCGCCGCAGCTGCTACTGGTG
CTGCCCCTCATGGTACAGCTGATGCTGATACTATTTGCATCCCTCCCTCC
CCTTATCCTGTCGCGAATCAAAGAACCTTAACACCGTGGGGAGGAGGGGG
GGGAGGAGAGAGGAGAGAAGTAAAAGGCATATCGCCCATGATGCCCGTAG
AATAAGAAAAGGAGAAAGATAACGACGAATATGAAGAGCAGGAAAAGGAG
AAGAGAAGGGAGCAAGATGAAGCAAGGGAACTTCTCTGGCCTGCTTTTGT
CCTCAGCAGCTTCAATAGAAAGTAGGAGAAGGTAATGAGGGAGGGAGGGA
GGGAGAAAGGGAAAGACGTTATATATTGCATATCCTAGCGTGCCTGATGC
CCAAGCTAATTATCAAAAGCAGCAACAGCAGTAGCAGTAGCAACTAGAGT
GTACTAAGTTGAGAAAGAGAACGAGCGAAGCGAAAGCGTGTGGATGAATG
ATTGTGTAGACGGGCGAGACAATGAGAAAAGTGAGTGAAAGAGGGAGAGG
GGAGAAGGCCTTGGTATGAAGAAAGATGAGGAGGAAAGCTGCGGGAGAAC
TGAATATACATATTTGAATTGCTGGGGTTGCATATTTGTTGGTTTGAGGC
GAGAACGTGACTCATGGAGAGAGAACGAGAGAAAAGGAAAGAAAGATAGG
GATAAAACGAGAGACTGACAGACAGAGAGTCCGAGGCAGAGAGAGAGACA
CACAGAGGGAGAGACAGAGAGAGACCGGCAGTCATATCTCTATCGTCCAT
CAAGAGCCAATTGGTCGTCGGAGTCTATGTGCATTCCCATGTCTGCAGTC
AGTGTATATTCATGTTTGTGCCATCGACGCCGTCATTTCAAAATTTGTTC
ATGCATGTACTTAATACGAAGCAATTGAAGGAGAAGAATACTAAAACGAC
GAAGACAAGGAGCGATATTGAAGAGGAAAAGAAAATGCTGGGGCGACGAA
TGGACAAGAAGAAACGGGCGAATTCGTGTG

protein sequence of jgi.p|Nanoce1779_2|631422

>mRNA_6256-protein ID=mRNA_6256-protein|Name=jgi.p|Nanoce1779_2|631422|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MTLDELREYFDKPIEEAARAIGVCSTLLKKICRKYHIKRWPYRQVKSLDR
TIECLKLAAENAGKGGGGGGGGEGGQGGRQDSVEEGRLLRQIKVLEARRE
ELITHSANPGSTQPPGIEEGGKEGRGLCLELTSPCSRRMQSPTVGLSCSF
SSSSLTGPLPPAASGTSGQKNKRKGLEGASCGRSNNSNSSSSWKRVRMEE
EEGQRRRVLEQQQRQQQRGQ*

mRNA from alignment at scaffold_15:142798..145517-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6256 ID=mRNA_6256|Name=jgi.p|Nanoce1779_2|631422|organism=Nannochloropsis oceanica|type=mRNA|length=2720bp|location=Sequence derived from alignment at scaffold_15:142798..145517- (Nannochloropsis oceanica)
AACAACAACAACAACAACAACGAGAAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGGAGGGGTGGATGCAGCAGGGAGGGTGGCTAAAAATAT
GACTTTGGATGAATTGCGTGAGTATTTTGACAAGCCCATTGAAGAGGCTG
CACGCGCCATTGGTGTTTGCTCGACGTTACTGAAGAAAATATGTCGGAAA
TATCACATAAAACGGTGGCCATACAGGCAGGTGAAAAGTTTGGATAGGAC
CATCGAGTGCTTAAAGCTCGCGGCAGAAAATGCAGGGAAGGGCGGCGGAG
GAGGGGGAGGGGGGGAGGGGGGACAGGGAGGAAGGCAAGACTCAGTGGAG
GAAGGTCGGTTGTTGAGGCAGATAAAGGTGTTGGAGGCACGGAGAGAGGA
ACTGATCACTCATTCGGCAAATCCGGGGTCTACACAGCCGCCGGGAATTG
AGGAGGGAGGAAAGGAGGGTAGGGGGTTGTGTTTGGAGTTAACGAGTCCG
TGTAGTCGCCGCATGCAGAGCCCGACGGTGGGTCTATCTTGTTCATTTTC
TTCGTCATCCTTGACCGGGCCGCTTCCGCCTGCCGCCTCTGGCACGAGTG
GTCAGAAAAATAAGCGGAAGGGTCTGGAGGGCGCAAGTTGTGGCAGGAGC
AACAACAGCAACAGCAGCAGCAGTTGGAAGAGAGGTGGGGATATCGGCGA
GGATGTTGGAGGAGGAAAGGGGGGGACATGGAGAGAGGGAGGAAACAAGC
CACGTGCTTCCTCGACCACCAGCATGATGAACCTTCTCGCCCTCGACTCC
CCCTCCTCCGTCTCTGCCTCCACCTCCCACCCCTCCTTCCCCACCTCCTT
CCCTCCCTCCCTTGCCGGGTACTTCCTCCACGCCGGGATTACTGCTAGTA
CTGCTGGCATTGCAGGTACTGCGGGCAGTACGCCTCCTCCTCTTCCTCTC
AGCACACTTCCCCTCCAACCACCGTTGACGGCCCAACGTCTTGAAAGCGT
CCGAACACAAAGCAATCCTTCTCTTCCTCTTTCTCTTTCTCCTTCTCCTG
CTGCTGCCACTACTGCTGCTACTGTTCCTGCCACCACGCCACTTGTTGCT
GCGGCTCCTTCTGCTGCTTTGCCCTTCGGGGTAGTCCCTTCTCCCTCCTC
CTTATTCTTCCCCTGCATGGGCAGTGCGTATGGAGGAGGAGGAGGGACAG
AGACGCAGGGTACTGGAGCAGCAGCAGCGGCAGCAGCAGCGGGGGCAATA
GGAGGAGGAGGGATGGAGAGAGTCGGTATAAATATTGATGCCCTTGCGAG
AAACGGATTTGTGCAGCAGATGGCGCTGGGGCAAGCCCAAGGGATGGGAG
CCTCCTTCCCTCCTCCCTCCTTTCCCGTGCTTCCTCTGACCTCCCTGGCT
CCAGCAGCCGGTGGATACTCTGGAGTGATGTCGCCGCCGCACTTGCAGCA
GCAGCAACTACAAGAGCTCTTCCAGCAACAATTTTACATGTATATGCTTG
CCCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAACAAGAATCA
CTGAAGCACAGCCATGCAGCTCCCACCACCAGCATCTTGATTGCTCGTGG
CGGCAGCAGCAGCAGCAGCGGTGGCAGTGGTGGCAAGAAGAGGGCGACGG
GTGTGGAAGAGGCCTTGCAGAGGGACAAGGAGAGCATGAATCTACTGCAG
TTACAAGCCCGAAAGGTAGCCGCCGCAGCTGCTACTGGTGCTGCCCCTCA
TGGTACAGCTGATGCTGATACTATTTGCATCCCTCCCTCCCCTTATCCTG
TCGCGAATCAAAGAACCTTAACACCGTGGGGAGGAGGGGGGGGAGGAGAG
AGGAGAGAAGTAAAAGGCATATCGCCCATGATGCCCGTAGAATAAGAAAA
GGAGAAAGATAACGACGAATATGAAGAGCAGGAAAAGGAGAAGAGAAGGG
AGCAAGATGAAGCAAGGGAACTTCTCTGGCCTGCTTTTGTCCTCAGCAGC
TTCAATAGAAAGTAGGAGAAGGTAATGAGGGAGGGAGGGAGGGAGAAAGG
GAAAGACGTTATATATTGCATATCCTAGCGTGCCTGATGCCCAAGCTAAT
TATCAAAAGCAGCAACAGCAGTAGCAGTAGCAACTAGAGTGTACTAAGTT
GAGAAAGAGAACGAGCGAAGCGAAAGCGTGTGGATGAATGATTGTGTAGA
CGGGCGAGACAATGAGAAAAGTGAGTGAAAGAGGGAGAGGGGAGAAGGCC
TTGGTATGAAGAAAGATGAGGAGGAAAGCTGCGGGAGAACTGAATATACA
TATTTGAATTGCTGGGGTTGCATATTTGTTGGTTTGAGGCGAGAACGTGA
CTCATGGAGAGAGAACGAGAGAAAAGGAAAGAAAGATAGGGATAAAACGA
GAGACTGACAGACAGAGAGTCCGAGGCAGAGAGAGAGACACACAGAGGGA
GAGACAGAGAGAGACCGGCAGTCATATCTCTATCGTCCATCAAGAGCCAA
TTGGTCGTCGGAGTCTATGTGCATTCCCATGTCTGCAGTCAGTGTATATT
CATGTTTGTGCCATCGACGCCGTCATTTCAAAATTTGTTCATGCATGTAC
TTAATACGAAGCAATTGAAGGAGAAGAATACTAAAACGACGAAGACAAGG
AGCGATATTGAAGAGGAAAAGAAAATGCTGGGGCGACGAATGGACAAGAA
GAAACGGGCGAATTCGTGTG

Coding sequence (CDS) from alignment at scaffold_15:142798..145517-

>mRNA_6256 ID=mRNA_6256|Name=jgi.p|Nanoce1779_2|631422|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_15:142798..145517- (Nannochloropsis oceanica)
TGCGTATGGAGGAGGAGGAGGGACAGAGACGCAGGGTACTGGAGCAGCAG
CAGCGGCAGCAGCAGCGGGGGCAATAGATGACTTTGGATGAATTGCGTGA
GTATTTTGACAAGCCCATTGAAGAGGCTGCACGCGCCATTGGTGTTTGCT
CGACGTTACTGAAGAAAATATGTCGGAAATATCACATAAAACGGTGGCCA
TACAGGCAGGTGAAAAGTTTGGATAGGACCATCGAGTGCTTAAAGCTCGC
GGCAGAAAATGCAGGGAAGGGCGGCGGAGGAGGGGGAGGGGGGGAGGGGG
GACAGGGAGGAAGGCAAGACTCAGTGGAGGAAGGTCGGTTGTTGAGGCAG
ATAAAGGTGTTGGAGGCACGGAGAGAGGAACTGATCACTCATTCGGCAAA
TCCGGGGTCTACACAGCCGCCGGGAATTGAGGAGGGAGGAAAGGAGGGTA
GGGGGTTGTGTTTGGAGTTAACGAGTCCGTGTAGTCGCCGCATGCAGAGC
CCGACGGTGGGTCTATCTTGTTCATTTTCTTCGTCATCCTTGACCGGGCC
GCTTCCGCCTGCCGCCTCTGGCACGAGTGGTCAGAAAAATAAGCGGAAGG
GTCTGGAGGGCGCAAGTTGTGGCAGGAGCAACAACAGCAACAGCAGCAGC
AGTTGGAAGAGAGTGCGTATGGAGGAGGAGGAGGGACAGAGACGCAGGGT
ACTGGAGCAGCAGCAGCGGCAGCAGCAGCGGGGGCAATAGATGACTTTGG
ATGAATTGCGTGAGTATTTTGACAAGCCCATTGAAGAGGCTGCACGCGCC
ATTGGTGTTTGCTCGACGTTACTGAAGAAAATATGTCGGAAATATCACAT
AAAACGGTGGCCATACAGGCAGGTGAAAAGTTTGGATAGGACCATCGAGT
GCTTAAAGCTCGCGGCAGAAAATGCAGGGAAGGGCGGCGGAGGAGGGGGA
GGGGGGGAGGGGGGACAGGGAGGAAGGCAAGACTCAGTGGAGGAAGGTCG
GTTGTTGAGGCAGATAAAGGTGTTGGAGGCACGGAGAGAGGAACTGATCA
CTCATTCGGCAAATCCGGGGTCTACACAGCCGCCGGGAATTGAGGAGGGA
GGAAAGGAGGGTAGGGGGTTGTGTTTGGAGTTAACGAGTCCGTGTAGTCG
CCGCATGCAGAGCCCGACGGTGGGTCTATCTTGTTCATTTTCTTCGTCAT
CCTTGACCGGGCCGCTTCCGCCTGCCGCCTCTGGCACGAGTGGTCAGAAA
AATAAGCGGAAGGGTCTGGAGGGCGCAAGTTGTGGCAGGAGCAACAACAG
CAACAGCAGCAGCAGTTGGAAGAGAG

Synonyms

Publications