jgi.p|Nanoce1779_2|594340, mRNA_6255 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594340
Unique NamemRNA_6255
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length667
Alignment locationscaffold_15:142017..142683 -

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Properties
Property NameValue
TranscriptId594426
TrackFilteredModels2
ProteinId594340
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:142017..142683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594340gene_6255Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594340mRNA_6255-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6255CDS_6255Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6255 ID=mRNA_6255|Name=jgi.p|Nanoce1779_2|594340|organism=Nannochloropsis oceanica|type=mRNA|length=667bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAATTACTGCTGCTG
TTGCTTCTCCTTCTCCTGCACCCGTCATCTTGTCATCTTTTCTTACGCTT
CTTTCCCCTTTCTTTCCCTACCTATCACAGACAGGGCAAACAAAACACAG
AGAGAGGAAGAAGGAAGACCGGCGGACATATATTTTATGGTCGTCATAGT
AATACGAGCTGGGGAGGAAGGAAGGGAGGAAAGTAGGCTCCACCTGCTCC
CTCTTTTCTCCCTCTCTTTCCTAGATTTCTATTTCTCCATTCTCTTCTTG
ATCTTTTCCTTCTCTTTTTTCTCATTTGTCATGACAATTATAGGGATTGG
CGTTTCTCCTCTCTCCTTCTTCATCTTGCTTCTTCGCCGTGTTCCATCCC
TCCTTTTACTCCTGTCACGCAATGCACAACAGCGCCTCTTGTCTTGGTGT
GGCGCCGGTGCTTTTCTTCCTTTTCCCTTTTTTTTAATCAAATGAAAAAA
AAATCAAGAAAATATTCTGATAAGGAGCTACGGAAGTAAGACTGTTGTTG
CTGCTCCTGCTCTTGCTGGCGCTTCACGCTTCGGTTAGAGTTAGGGTTAG
GACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACAC
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protein sequence of jgi.p|Nanoce1779_2|594340

>mRNA_6255-protein ID=mRNA_6255-protein|Name=jgi.p|Nanoce1779_2|594340|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MVVIVIRAGEEGREESRLHLLPLFSLSFLDFYFSILFLIFSFSFFSFVMT
IIGIGVSPLSFFILLLRRVPSLLLLLSRNAQQRLLSWCGAGAFLPFPFFL
IK*
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mRNA from alignment at scaffold_15:142017..142683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6255 ID=mRNA_6255|Name=jgi.p|Nanoce1779_2|594340|organism=Nannochloropsis oceanica|type=mRNA|length=667bp|location=Sequence derived from alignment at scaffold_15:142017..142683- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAATTACTGCTGCTG
TTGCTTCTCCTTCTCCTGCACCCGTCATCTTGTCATCTTTTCTTACGCTT
CTTTCCCCTTTCTTTCCCTACCTATCACAGACAGGGCAAACAAAACACAG
AGAGAGGAAGAAGGAAGACCGGCGGACATATATTTTATGGTCGTCATAGT
AATACGAGCTGGGGAGGAAGGAAGGGAGGAAAGTAGGCTCCACCTGCTCC
CTCTTTTCTCCCTCTCTTTCCTAGATTTCTATTTCTCCATTCTCTTCTTG
ATCTTTTCCTTCTCTTTTTTCTCATTTGTCATGACAATTATAGGGATTGG
CGTTTCTCCTCTCTCCTTCTTCATCTTGCTTCTTCGCCGTGTTCCATCCC
TCCTTTTACTCCTGTCACGCAATGCACAACAGCGCCTCTTGTCTTGGTGT
GGCGCCGGTGCTTTTCTTCCTTTTCCCTTTTTTTTAATCAAATGAAAAAA
AAATCAAGAAAATATTCTGATAAGGAGCTACGGAAGTAAGACTGTTGTTG
CTGCTCCTGCTCTTGCTGGCGCTTCACGCTTCGGTTAGAGTTAGGGTTAG
GACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACAC
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Coding sequence (CDS) from alignment at scaffold_15:142017..142683-

>mRNA_6255 ID=mRNA_6255|Name=jgi.p|Nanoce1779_2|594340|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_15:142017..142683- (Nannochloropsis oceanica)
ATGGTCGTCATAGTAATACGAGCTGGGGAGGAAGGAAGGGAGGAAAGTAG
GCTCCACCTGCTCCCTCTTTTCTCCCTCTCTTTCCTAGATTTCTATTTCT
CCATTCTCTTCTTGATCTTTTCCTTCTCTTTTTTCTCATTTGTCATGACA
ATTATAGGGATTGGCGTTTCTCCTCTCTCCTTCTTCATCTTGCTTCTTCG
CCGTGTTCCATCCCTCCTTTTACTCCTGTCACGCAATGCACAACAGCGCC
TCTTGTCTTGGTGTGGCGCCGGTGCTTTTCTTCCTTTTCCCTTTTTTTTA
ATCAAATGA
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Synonyms
Publications