jgi.p|Nanoce1779_2|530268, mRNA_6254 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|530268
Unique Name	mRNA_6254
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2256
Alignment location	scaffold_15:139419..141674 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	530354
Track	FilteredModels2
ProteinId	530268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:139419..141674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530268	gene_6254	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530268	mRNA_6254-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6254	CDS_6254	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:139419..141674+
coding sequence from alignment at scaffold_15:139419..141674+

mRNA sequence

>mRNA_6254 ID=mRNA_6254|Name=jgi.p|Nanoce1779_2|530268|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp
ATGGAAACACCCCTCGAGACCGGCACCGGCAGCAGCGCCACCAGCAAAAG
CAGCGGAGGTGGCCTCCCTCCTCCTGGAACCGGGCCGTACAAAGGTCCTT
CGTCTTTCCCCTTGCTTGACTCGGTACGATATCCCCACGACATGAAACGG
TTCGACATGAAGGAGCTCAAGCAGCTCGCGCATGAGTTGAGGTGGGACAC
ATTGGGGCACGTGTCGAAGACTGGAGGCCATTTGGGGAGTAGCTTGGGGG
TGATCGAGCTTACGGTGGCGTTGCACTACGTATTCAACACGCCGGACGAC
CGGATTTGTTGGGATGTGAGTCATCAGGTGTACCCACACAAGATTTTGAC
GGGGAGGAGGGACAGGATGCATAGCCTGAGGCAAACAAATGGATTGAGCG
GGTTCGCCAAGAGGAGCGAGAGTGAGTACGACGCTTTTGGCGCCGGACAT
TCGAGCACCTCTATCTCCTCGGCCTTGGGCATGAGTGTGGGGAAGTTGCT
GACGAACAAGCGCGTGAACAATTGCATTGCGGTGATTGGTGACGGGGCCA
TCACGGGGGGGATGGCGTTCGAGGCGCTCAACAATGCCGGCTATTTGAGG
TCACGAATGGTGGTGATTTTAAATGATAACGGACAGGTGTCGCTGCCCAC
GGGGACGCATTCTGCCGGGGGGGTGGTGCCGGCGGGGGCGTTGAGCAGCT
ATACAAGCCGGCTGTTGAGCTCGAAGCCGTTTCAGGACTTTCGAAGCTTC
GCCAAGGGTCTGAACAGGCTGATGCCGTCGGAGTTGCAAGATCTGAACGC
GAAGCTCGACGAGTACGCCCGCGGGTTAATTCAGGGGGGGACGCTGTTCG
AGGAATTGGGCTTCTATTATATCGGGCCCGTGGATGGCCATGACTTAGAA
AACCTTGTGCCGATATTGGAAAATTTGCGGGACTCGCCGAGCACGAAGCC
GGTATTGTTGCATGTGAAGACGGAAAAGGGTTACGGATACCCTCCCGCAG
AGGCAGCAAGCGACAAGTACCACGGTGTTGCCAAGTTTGATTTGTCGACG
GGGAAGCAGTTCAAGGGCGGGAACAAGGGAGGACCGCCGTCGTTGACGAC
GACGTTTGCGAATGCATTGTGTGAGATTGCGACGGAAGATAGGACGGTGG
TAGGCATCACGGCGGCCATGCCCGGGGGCACCGGCATGGATATCTTTGGT
AAACGGTTTCCTAAACGTACATTTGACGTTGGGATTGCGGAGCAGCATGC
GGTTACGTTTGCGGCGGGCATGGCCATTGAAGGCTTGAAGCCGTTTTGTT
GCATCTACAGCACGTTTATGCAGCGGGGATATGATCAGGTGGTGCACGAC
GTGGTCATCCAGAAACTGCCTGTGAGGATGATCCTTGACCGGGCTGGGTT
GGTTGGCAATGACGGCCCGACCCACCACGGAAGCTTCGACCTGAGTTATT
TGGGAGCCTTGCCTGATATTGTCATCATGGCGCCCAGCGATGAAGTGGAG
CTGATGAACCTGCTGGAGACGGCGTATGAGACGAACGACTTGCCGTCGGT
GGTAAGGTACCCGAGGGGGGCGGGCTATGGACTGGAGCTTTTGAGGAAGG
AGCTTGGGTATGTAGGGTTGCAGGAGATTCCCAAGAGGGGCAAGGCGGTG
ACACGGGGCAAAGGACGGCTGATTAATTATCGCGGTGATGGGCCTGCGCC
TGCTGCGCCTGCGGTGAAGGTGGGGTTACTGTCGGTGGGGACGCGCTTGT
TGGATACGGTGAAAGCGGCCAGGGAGATTGAAAAGAGCATGCCGGGGGTG
AGTGTGACCGTAGCGGACGCACGCTTTGTGAAACCGCTGGATAAGGAGAT
GATTGCGTCCTTGGCTCGGGAGAACGATGTGCTGATCACAATTGAAGAGA
ACAGCGTGGGGGGCTTTGGATCTTTTGTGCAGCAATTCCTGCTGGAGGAG
GGCTTGATGGATGGAGGGAGGCTGAGGTTACGGTCCATGGTGTTGCCTGA
TAAATTTATTGAGGCCGGTCCTCAGAGTGATCAGTACGACCAGGCCGGTT
TGGCTGCCCATCATATAGTCGAAAAGGCCGCGGGGCTCGTGCAAGGGGCG
AAGGATGGGAAGATTCTCCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGGACCGCCTGCGGTGGTTCCAGCGGCAGCAG
GGGTAGGAATGGGGAAAAGCAGTAGGCAGGGGACATCTTTCCAGGTGTTA
CCTTGA

protein sequence of jgi.p|Nanoce1779_2|530268

>mRNA_6254-protein ID=mRNA_6254-protein|Name=jgi.p|Nanoce1779_2|530268|organism=Nannochloropsis oceanica|type=polypeptide|length=752bp
METPLETGTGSSATSKSSGGGLPPPGTGPYKGPSSFPLLDSVRYPHDMKR
FDMKELKQLAHELRWDTLGHVSKTGGHLGSSLGVIELTVALHYVFNTPDD
RICWDVSHQVYPHKILTGRRDRMHSLRQTNGLSGFAKRSESEYDAFGAGH
SSTSISSALGMSVGKLLTNKRVNNCIAVIGDGAITGGMAFEALNNAGYLR
SRMVVILNDNGQVSLPTGTHSAGGVVPAGALSSYTSRLLSSKPFQDFRSF
AKGLNRLMPSELQDLNAKLDEYARGLIQGGTLFEELGFYYIGPVDGHDLE
NLVPILENLRDSPSTKPVLLHVKTEKGYGYPPAEAASDKYHGVAKFDLST
GKQFKGGNKGGPPSLTTTFANALCEIATEDRTVVGITAAMPGGTGMDIFG
KRFPKRTFDVGIAEQHAVTFAAGMAIEGLKPFCCIYSTFMQRGYDQVVHD
VVIQKLPVRMILDRAGLVGNDGPTHHGSFDLSYLGALPDIVIMAPSDEVE
LMNLLETAYETNDLPSVVRYPRGAGYGLELLRKELGYVGLQEIPKRGKAV
TRGKGRLINYRGDGPAPAAPAVKVGLLSVGTRLLDTVKAAREIEKSMPGV
SVTVADARFVKPLDKEMIASLARENDVLITIEENSVGGFGSFVQQFLLEE
GLMDGGRLRLRSMVLPDKFIEAGPQSDQYDQAGLAAHHIVEKAAGLVQGA
KDGKILQQQQQQQQQQQQQQQQQGPPAVVPAAAGVGMGKSSRQGTSFQVL
P*

mRNA from alignment at scaffold_15:139419..141674+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6254 ID=mRNA_6254|Name=jgi.p|Nanoce1779_2|530268|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at scaffold_15:139419..141674+ (Nannochloropsis oceanica)
ATGGAAACACCCCTCGAGACCGGCACCGGCAGCAGCGCCACCAGCAAAAG
CAGCGGAGGTGGCCTCCCTCCTCCTGGAACCGGGCCGTACAAAGGTCCTT
CGTCTTTCCCCTTGCTTGACTCGGTACGATATCCCCACGACATGAAACGG
TTCGACATGAAGGAGCTCAAGCAGCTCGCGCATGAGTTGAGGTGGGACAC
ATTGGGGCACGTGTCGAAGACTGGAGGCCATTTGGGGAGTAGCTTGGGGG
TGATCGAGCTTACGGTGGCGTTGCACTACGTATTCAACACGCCGGACGAC
CGGATTTGTTGGGATGTGAGTCATCAGGTGTACCCACACAAGATTTTGAC
GGGGAGGAGGGACAGGATGCATAGCCTGAGGCAAACAAATGGATTGAGCG
GGTTCGCCAAGAGGAGCGAGAGTGAGTACGACGCTTTTGGCGCCGGACAT
TCGAGCACCTCTATCTCCTCGGCCTTGGGCATGAGTGTGGGGAAGTTGCT
GACGAACAAGCGCGTGAACAATTGCATTGCGGTGATTGGTGACGGGGCCA
TCACGGGGGGGATGGCGTTCGAGGCGCTCAACAATGCCGGCTATTTGAGG
TCACGAATGGTGGTGATTTTAAATGATAACGGACAGGTGTCGCTGCCCAC
GGGGACGCATTCTGCCGGGGGGGTGGTGCCGGCGGGGGCGTTGAGCAGCT
ATACAAGCCGGCTGTTGAGCTCGAAGCCGTTTCAGGACTTTCGAAGCTTC
GCCAAGGGTCTGAACAGGCTGATGCCGTCGGAGTTGCAAGATCTGAACGC
GAAGCTCGACGAGTACGCCCGCGGGTTAATTCAGGGGGGGACGCTGTTCG
AGGAATTGGGCTTCTATTATATCGGGCCCGTGGATGGCCATGACTTAGAA
AACCTTGTGCCGATATTGGAAAATTTGCGGGACTCGCCGAGCACGAAGCC
GGTATTGTTGCATGTGAAGACGGAAAAGGGTTACGGATACCCTCCCGCAG
AGGCAGCAAGCGACAAGTACCACGGTGTTGCCAAGTTTGATTTGTCGACG
GGGAAGCAGTTCAAGGGCGGGAACAAGGGAGGACCGCCGTCGTTGACGAC
GACGTTTGCGAATGCATTGTGTGAGATTGCGACGGAAGATAGGACGGTGG
TAGGCATCACGGCGGCCATGCCCGGGGGCACCGGCATGGATATCTTTGGT
AAACGGTTTCCTAAACGTACATTTGACGTTGGGATTGCGGAGCAGCATGC
GGTTACGTTTGCGGCGGGCATGGCCATTGAAGGCTTGAAGCCGTTTTGTT
GCATCTACAGCACGTTTATGCAGCGGGGATATGATCAGGTGGTGCACGAC
GTGGTCATCCAGAAACTGCCTGTGAGGATGATCCTTGACCGGGCTGGGTT
GGTTGGCAATGACGGCCCGACCCACCACGGAAGCTTCGACCTGAGTTATT
TGGGAGCCTTGCCTGATATTGTCATCATGGCGCCCAGCGATGAAGTGGAG
CTGATGAACCTGCTGGAGACGGCGTATGAGACGAACGACTTGCCGTCGGT
GGTAAGGTACCCGAGGGGGGCGGGCTATGGACTGGAGCTTTTGAGGAAGG
AGCTTGGGTATGTAGGGTTGCAGGAGATTCCCAAGAGGGGCAAGGCGGTG
ACACGGGGCAAAGGACGGCTGATTAATTATCGCGGTGATGGGCCTGCGCC
TGCTGCGCCTGCGGTGAAGGTGGGGTTACTGTCGGTGGGGACGCGCTTGT
TGGATACGGTGAAAGCGGCCAGGGAGATTGAAAAGAGCATGCCGGGGGTG
AGTGTGACCGTAGCGGACGCACGCTTTGTGAAACCGCTGGATAAGGAGAT
GATTGCGTCCTTGGCTCGGGAGAACGATGTGCTGATCACAATTGAAGAGA
ACAGCGTGGGGGGCTTTGGATCTTTTGTGCAGCAATTCCTGCTGGAGGAG
GGCTTGATGGATGGAGGGAGGCTGAGGTTACGGTCCATGGTGTTGCCTGA
TAAATTTATTGAGGCCGGTCCTCAGAGTGATCAGTACGACCAGGCCGGTT
TGGCTGCCCATCATATAGTCGAAAAGGCCGCGGGGCTCGTGCAAGGGGCG
AAGGATGGGAAGATTCTCCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGGACCGCCTGCGGTGGTTCCAGCGGCAGCAG
GGGTAGGAATGGGGAAAAGCAGTAGGCAGGGGACATCTTTCCAGGTGTTA
CCTTGA

Coding sequence (CDS) from alignment at scaffold_15:139419..141674+

>mRNA_6254 ID=mRNA_6254|Name=jgi.p|Nanoce1779_2|530268|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_15:139419..141674+ (Nannochloropsis oceanica)
ATGGAAACACCCCTCGAGACCGGCACCGGCAGCAGCGCCACCAGCAAAAG
CAGCGGAGGTGGCCTCCCTCCTCCTGGAACCGGGCCGTACAAAGGTCCTT
CGTCTTTCCCCTTGCTTGACTCGGTACGATATCCCCACGACATGAAACGG
TTCGACATGAAGGAGCTCAAGCAGCTCGCGCATGAGTTGAGGTGGGACAC
ATTGGGGCACGTGTCGAAGACTGGAGGCCATTTGGGGAGTAGCTTGGGGG
TGATCGAGCTTACGGTGGCGTTGCACTACGTATTCAACACGCCGGACGAC
CGGATTTGTTGGGATGTGAGTCATCAGGTGTACCCACACAAGATTTTGAC
GGGGAGGAGGGACAGGATGCATAGCCTGAGGCAAACAAATGGATTGAGCG
GGTTCGCCAAGAGGAGCGAGAGTGAGTACGACGCTTTTGGCGCCGGACAT
TCGAGCACCTCTATCTCCTCGGCCTTGGGCATGAGTGTGGGGAAGTTGCT
GACGAACAAGCGCGTGAACAATTGCATTGCGGTGATTGGTGACGGGGCCA
TCACGGGGGGGATGGCGTTCGAGGCGCTCAACAATGCCGGCTATTTGAGG
TCACGAATGGTGGTGATTTTAAATGATAACGGACAGGTGTCGCTGCCCAC
GGGGACGCATTCTGCCGGGGGGGTGGTGCCGGCGGGGGCGTTGAGCAGCT
ATACAAGCCGGCTGTTGAGCTCGAAGCCGTTTCAGGACTTTCGAAGCTTC
GCCAAGGGTCTGAACAGGCTGATGCCGTCGGAGTTGCAAGATCTGAACGC
GAAGCTCGACGAGTACGCCCGCGGGTTAATTCAGGGGGGGACGCTGTTCG
AGGAATTGGGCTTCTATTATATCGGGCCCGTGGATGGCCATGACTTAGAA
AACCTTGTGCCGATATTGGAAAATTTGCGGGACTCGCCGAGCACGAAGCC
GGTATTGTTGCATGTGAAGACGGAAAAGGGTTACGGATACCCTCCCGCAG
AGGCAGCAAGCGACAAGTACCACGGTGTTGCCAAGTTTGATTTGTCGACG
GGGAAGCAGTTCAAGGGCGGGAACAAGGGAGGACCGCCGTCGTTGACGAC
GACGTTTGCGAATGCATTGTGTGAGATTGCGACGGAAGATAGGACGGTGG
TAGGCATCACGGCGGCCATGCCCGGGGGCACCGGCATGGATATCTTTGGT
AAACGGTTTCCTAAACGTACATTTGACGTTGGGATTGCGGAGCAGCATGC
GGTTACGTTTGCGGCGGGCATGGCCATTGAAGGCTTGAAGCCGTTTTGTT
GCATCTACAGCACGTTTATGCAGCGGGGATATGATCAGGTGGTGCACGAC
GTGGTCATCCAGAAACTGCCTGTGAGGATGATCCTTGACCGGGCTGGGTT
GGTTGGCAATGACGGCCCGACCCACCACGGAAGCTTCGACCTGAGTTATT
TGGGAGCCTTGCCTGATATTGTCATCATGGCGCCCAGCGATGAAGTGGAG
CTGATGAACCTGCTGGAGACGGCGTATGAGACGAACGACTTGCCGTCGGT
GGTAAGGTACCCGAGGGGGGCGGGCTATGGACTGGAGCTTTTGAGGAAGG
AGCTTGGGTATGTAGGGTTGCAGGAGATTCCCAAGAGGGGCAAGGCGGTG
ACACGGGGCAAAGGACGGCTGATTAATTATCGCGGTGATGGGCCTGCGCC
TGCTGCGCCTGCGGTGAAGGTGGGGTTACTGTCGGTGGGGACGCGCTTGT
TGGATACGGTGAAAGCGGCCAGGGAGATTGAAAAGAGCATGCCGGGGGTG
AGTGTGACCGTAGCGGACGCACGCTTTGTGAAACCGCTGGATAAGGAGAT
GATTGCGTCCTTGGCTCGGGAGAACGATGTGCTGATCACAATTGAAGAGA
ACAGCGTGGGGGGCTTTGGATCTTTTGTGCAGCAATTCCTGCTGGAGGAG
GGCTTGATGGATGGAGGGAGGCTGAGGTTACGGTCCATGGTGTTGCCTGA
TAAATTTATTGAGGCCGGTCCTCAGAGTGATCAGTACGACCAGGCCGGTT
TGGCTGCCCATCATATAGTCGAAAAGGCCGCGGGGCTCGTGCAAGGGGCG
AAGGATGGGAAGATTCTCCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGGACCGCCTGCGGTGGTTCCAGCGGCAGCAG
GGGTAGGAATGGGGAAAAGCAGTAGGCAGGGGACATCTTTCCAGGTGTTA
CCTTGA

Synonyms

Publications