jgi.p|Nanoce1779_2|594331, mRNA_6253 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594331
Unique Name	mRNA_6253
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1061
Alignment location	scaffold_15:136757..137817 -

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Properties


Property Name	Value
TranscriptId	594417
Track	FilteredModels2
ProteinId	594331

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:136757..137817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594331	gene_6253	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594331	mRNA_6253-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6253	CDS_6253	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:136757..137817-
coding sequence from alignment at scaffold_15:136757..137817-

mRNA sequence

>mRNA_6253 ID=mRNA_6253|Name=jgi.p|Nanoce1779_2|594331|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp
AAGTTTTGCTATCTGTATCGCTTTTTTTGAAAGGTCGAATCCTGTGGCCC
AACAATCAAATTTTCCTTCCATGATCTGCTATGAATACCCGCCTCTCCTA
CACTTTCTCCTGCCTCCGCCTTACTCCCACACCAGGTTCCTATTCAGTGG
CAGGAAAGACATCTCTTTCTTGAGTGATTGGCATCTTCTCTCAAGCCTAG
GGTTCGCAATTTTTCTTGTTTATTTTTAATATTTCACTTGAATTAAGGAA
ACCAGCAGATTCCCCAACCTTATCTCACCCAAGGTGCACCTCACGGGCTG
TCTCAAATTTTGATGTGCTGTATAGATAAGGTATTAATTACAGCAACGAA
ATTCACAGTAGAAATTTCGTTCCAAATCAGAACAACGTAGTGCCCGATCT
CAAACGCCTCCTTCCAAGTAGTAGAAGCTTCCTTCCTCTCAAATCAGGGC
ATTGCTGCTCGTGCCATGCGGCGAAAAATATCGCACATGCTACAAACAGC
ACTTGCGCTGCGCGCTAATATATCAACGAGTCAATGCTTACGAAGTCAAA
CAATTTATTTGCATCTCACGTCGCCTCGTGTTCCAGTCCTCACAAATACC
GCCGTGCTCACGGTTGGGAAAGACCTCGCGCACTTGCTCCTCTTTCATGC
AGATCCTTATCACAAAGAATTACCAGTCCTCCAAAGCGTGTCAGATAACC
TCGCAAGTGTCCCAACAGGCCGTCTGCCGCAAAGACACTGGCTAATTGCC
GGGAAAGGTTGACTTTGATCCCCTTCGACGAGGAACACCACCTCGAGAGG
TGCAAGAGAGCCAAATTGCGGAGTTTGATTTTCACCATTCAAATTTTACG
GTACTATTTCATGTGAACCAACACCACGCGTACCCCCAAAAAATGTTGGG
CTCTATGGAGACGGCATATTTTTCTTCAATCAAGTCTGGTTTTCTAATCT
ACGCCTGGTTGCTTCGAGTGTGAGATACTTCTCTTGTCCGGAGACAGGCC
GAAGTGCCGAAGCAAGGAAGGAGGGCCCCGCCTTATACCGCCTGCTTGAT
CTACCTGTCTG

protein sequence of jgi.p|Nanoce1779_2|594331

>mRNA_6253-protein ID=mRNA_6253-protein|Name=jgi.p|Nanoce1779_2|594331|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MRRKISHMLQTALALRANISTSQCLRSQTIYLHLTSPRVPVLTNTAVLTV
GKDLAHLLLFHADPYHKELPVLQSVSDNLASVPTGRLPQRHWLIAGKG*

mRNA from alignment at scaffold_15:136757..137817-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6253 ID=mRNA_6253|Name=jgi.p|Nanoce1779_2|594331|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp|location=Sequence derived from alignment at scaffold_15:136757..137817- (Nannochloropsis oceanica)
AAGTTTTGCTATCTGTATCGCTTTTTTTGAAAGGTCGAATCCTGTGGCCC
AACAATCAAATTTTCCTTCCATGATCTGCTATGAATACCCGCCTCTCCTA
CACTTTCTCCTGCCTCCGCCTTACTCCCACACCAGGTTCCTATTCAGTGG
CAGGAAAGACATCTCTTTCTTGAGTGATTGGCATCTTCTCTCAAGCCTAG
GGTTCGCAATTTTTCTTGTTTATTTTTAATATTTCACTTGAATTAAGGAA
ACCAGCAGATTCCCCAACCTTATCTCACCCAAGGTGCACCTCACGGGCTG
TCTCAAATTTTGATGTGCTGTATAGATAAGGTATTAATTACAGCAACGAA
ATTCACAGTAGAAATTTCGTTCCAAATCAGAACAACGTAGTGCCCGATCT
CAAACGCCTCCTTCCAAGTAGTAGAAGCTTCCTTCCTCTCAAATCAGGGC
ATTGCTGCTCGTGCCATGCGGCGAAAAATATCGCACATGCTACAAACAGC
ACTTGCGCTGCGCGCTAATATATCAACGAGTCAATGCTTACGAAGTCAAA
CAATTTATTTGCATCTCACGTCGCCTCGTGTTCCAGTCCTCACAAATACC
GCCGTGCTCACGGTTGGGAAAGACCTCGCGCACTTGCTCCTCTTTCATGC
AGATCCTTATCACAAAGAATTACCAGTCCTCCAAAGCGTGTCAGATAACC
TCGCAAGTGTCCCAACAGGCCGTCTGCCGCAAAGACACTGGCTAATTGCC
GGGAAAGGTTGACTTTGATCCCCTTCGACGAGGAACACCACCTCGAGAGG
TGCAAGAGAGCCAAATTGCGGAGTTTGATTTTCACCATTCAAATTTTACG
GTACTATTTCATGTGAACCAACACCACGCGTACCCCCAAAAAATGTTGGG
CTCTATGGAGACGGCATATTTTTCTTCAATCAAGTCTGGTTTTCTAATCT
ACGCCTGGTTGCTTCGAGTGTGAGATACTTCTCTTGTCCGGAGACAGGCC
GAAGTGCCGAAGCAAGGAAGGAGGGCCCCGCCTTATACCGCCTGCTTGAT
CTACCTGTCTG

Coding sequence (CDS) from alignment at scaffold_15:136757..137817-

>mRNA_6253 ID=mRNA_6253|Name=jgi.p|Nanoce1779_2|594331|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_15:136757..137817- (Nannochloropsis oceanica)
ATGCGGCGAAAAATATCGCACATGCTACAAACAGCACTTGCGCTGCGCGC
TAATATATCAACGAGTCAATGCTTACGAAGTCAAACAATTTATTTGCATC
TCACGTCGCCTCGTGTTCCAGTCCTCACAAATACCGCCGTGCTCACGGTT
GGGAAAGACCTCGCGCACTTGCTCCTCTTTCATGCAGATCCTTATCACAA
AGAATTACCAGTCCTCCAAAGCGTGTCAGATAACCTCGCAAGTGTCCCAA
CAGGCCGTCTGCCGCAAAGACACTGGCTAATTGCCGGGAAAGGTTGA

Synonyms

Publications