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Properties
| Property Name | Value |
|---|
| TranscriptId | 631506 |
| Track | FilteredModels2 |
| ProteinId | 631420 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:134045..136185 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6252 ID=mRNA_6252|Name=jgi.p|Nanoce1779_2|631420|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
CAACAGGCGAGAGGCACGCGTTCAGGAAAGGTCGCATTCTACATGAAATA
GTCGGCTCCCTAAGGTTTGGAAAAGAGGATCGAGGTGTGAACATAAACAG
AGCGAGAGAAAGCAGTCAGACTGAGCCAAAGTAAGGGCGGCGGCGACGAC
CACCACGATGATGCCGGGCGACGTGTTGCTTAGCAACAGCATCGGCGGGG
GGCGTCTCGCTTCCTTCTCCGACAATCCCAGGCCGTCCACCGCTTCGTAT
CATCACCACTACCCGCAGCCCCTGCAAATGCAGCACCAGGAAGAGAAGAA
TGAAGAGGAAGAGGAGGAGAAAGATTGCACGGACTTGTATATGCTGCGCG
ACGACGACGGAAGCAAAAGCCTCAACTGCGACGAGGAGCTCGGGGAGGAG
GATGCCAACGAGACCGCCTTCGCTGCCGAGACACATCCTGCGACCGTGTA
CCAGCACCAGTATGGCCACGGAGCCGTCGTCCCGCCTCATCCGCTCCTTT
CCCAGCAACCACCGCAGCCGCAGCAGCCGCAGCTTTGTTTTGCTGCCTCC
CATGCCCTTCCTCCTTTCCCCGCCCCGATGGCTGTGATGGCGATTACAGG
GGTCCCTCCGACTGCATCCGTCGCACGCCCGAGTATTGCCCCTTTCCACC
CCTCCTCGAGCCTACGCAACGTCCTTCCTAGCGGGCCACCACAACAACAA
CACAAACCTCCCCCTCCGACCCTCCCACCTCCTCTCCCTTCCCGGGCATC
TCTCGGGCGCACGCAAAGCATGCCCGCTCTTTCCCATATCCCTCCTCCCC
CTCCTCCCCACCTGCTGCGACAACGCTCCTACTCCTCCTTATCTCGGCCT
TACCGCACCCGGACCGGGTATTTCCTTTCCCAGCACTTGGACTCAGTGGA
CGAAGCAGACTTCGAAGACGTAGCTGAGATGGTTGTTAATATGCACGTAC
AAGAGCGAGATTACTACGCCCCCCCTCTCGCGTACTTTAAGCACTTGGAG
CAGGACCTCATCCTTGCCCACCGTCGTCAAGGCTCTGTTCGATGGTTCTC
GAAAGTCGTCCAGCAGGTCCAGGCCAACCGCGAGACCATCCCCACTGCCA
CCAATTTCCTCGATCGCTACCTCGCCGCCCTTCTCTACCCTCCCCTTGCC
GGACCTTTCGCCACCTCGGCCACCACCACCTCTACAGCTGCTCCTGCTCC
TGCGGCTTCTGCTCCTGCTGGTCCTGTGGGGATGACGGTGGCAGGCACCC
GTTCCACAGCTGCAGAGACCGCCAACAGCAGTAACATTGACAGCAGCAGC
AGCAACAGCAGCAGTAGTCCAACCACCACGCCGTTTTTCCTGTGTGACGA
GCGGGTCTTCGAGAAGCTGGCCGTGTGCGCCTTCATCCTTGCCATGAAAA
TGCAGCAAGGGGACAGCACTTCCAATGTCGCCAAAAAGCTTGAAAATTTG
ACGTCCGCCTCCCTCCTTACACCTGGAGCGCTCTGCGATATGGAATTTCG
GATGATGGGAGCCCTTGGCCGTTACTTGAACCCCCCAACGGCCGGGACGT
TAATTCATCATCTGCTCCACTTCCTCCCGGCTCATGAAGGGAGGGAAGGA
GGGCGTCAGTCGCCGGCTTCAGAAGGCCTGGGAGGACGAGGAGACAGGGA
GGGAGGAAGGGATGGAGGGGTGAAGAACAAAGGACTCTTTTTAGCCCTGG
ATGACCATGCCAATGACCTGGCATTGATGGCCCTCGACACGCCGGGGTTA
ATCAAATTCCCTGTGAGTGTGATTGCCGTTGCCGCCATCCTGGCCTCCTT
CGCCTGGGTCCGGTCCTCGATGAAAGGGGAGGGGGGGAGGGAGGAAGGGG
AGGGGTTGGATCCGACTCTGGAGATGCAGTGGCTTCAGACGCTGGACGCC
AACG back to topprotein sequence of jgi.p|Nanoce1779_2|631420 >mRNA_6252-protein ID=mRNA_6252-protein|Name=jgi.p|Nanoce1779_2|631420|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MMPGDVLLSNSIGGGRLASFSDNPRPSTASYHHHYPQPLQMQHQEEKNEE
EEEEKDCTDLYMLRDDDGSKSLNCDEELGEEDANETAFAAETHPATVYQH
QYGHGAVVPPHPLLSQQPPQPQQPQLCFAASHALPPFPAPMAVMAITGVP
PTASVARPSIAPFHPSSSLRNVLPSGPPQQQHKPPPPTLPPPLPSRASLG
RTQSMPALSHIPPPPPPHLLRQRSYSSLSRPYRTRTGYFLSQHLDSVDEA
DFEDVAEMVVNMHVQERDYYAPPLAYFKHLEQDLILAHRRQGSVRWFSKV
VQQVQANRETIPTATNFLDRYLAALLYPPLAGPFATSATTTSTAAPAPAA
SAPAGPVGMTVAGTRSTAAETANSSNIDSSSSNSSSSPTTTPFFLCDERV
FEKLAVCAFILAMKMQQGDSTSNVAKKLENLTSASLLTPGALCDMEFRMM
GALGRYLNPPTAGTLIHHLLHFLPAHEGREGGRQSPASEGLGGRGDREGG
RDGGVKNKGLFLALDDHANDLALMALDTPGLIKFPVSVIAVAAILASFAW
VRSSMKGEGGREEGEGLDPTLEMQWLQTLDAN back to topmRNA from alignment at scaffold_15:134045..136185- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6252 ID=mRNA_6252|Name=jgi.p|Nanoce1779_2|631420|organism=Nannochloropsis oceanica|type=mRNA|length=2141bp|location=Sequence derived from alignment at scaffold_15:134045..136185- (Nannochloropsis oceanica)
CAACAGGCGAGAGGCACGCGTTCAGGAAAGGTCGCATTCTACATGAAATA
GTCGGCTCCCTAAGGTTTGGAAAAGAGGATCGAGGTGTGAACATAAACAG
AGCGAGAGAAAGCAGTCAGACTGAGCCAAAGTAAGGGCGGCGGCGACGAC
CACCACGATGATGCCGGGCGACGTGTTGCTTAGCAACAGCATCGGCGGGG
GGCGTCTCGCTTCCTTCTCCGACAATCCCAGGCCGTCCACCGCTTCGTAT
CATCACCACTACCCGCAGCCCCTGCAAATGCAGCACCAGGAAGAGAAGAA
TGAAGAGGAAGAGGAGGAGAAAGATTGCACGGACTTGTATATGCTGCGCG
ACGACGACGGAAGCAAAAGCCTCAACTGCGACGAGGAGCTCGGGGAGGAG
GATGCCAACGAGACCGCCTTCGCTGCCGAGGTAAGAGCTGATTTGATGAG
TCACGGGCATTAAAAAACATCGCTATTTACCCTTTCTTTGTTCCTTCATT
TCTTCATAGACACATCCTGCGACCGTGTACCAGCACCAGTATGGCCACGG
AGCCGTCGTCCCGCCTCATCCGCTCCTTTCCCAGCAACCACCGCAGCCGC
AGCAGCCGCAGCTTTGTTTTGCTGCCTCCCATGCCCTTCCTCCTTTCCCC
GCCCCGATGGCTGTGATGGCGATTACAGGGGTCCCTCCGACTGCATCCGT
CGCACGCCCGAGTATTGCCCCTTTCCACCCCTCCTCGAGCCTACGCAACG
TCCTTCCTAGCGGGCCACCACAACAACAACACAAACCTCCCCCTCCGACC
CTCCCACCTCCTCTCCCTTCCCGGGCATCTCTCGGGCGCACGCAAAGCAT
GCCCGCTCTTTCCCATATCCCTCCTCCCCCTCCTCCCCACCTGCTGCGAC
AACGCTCCTACTCCTCCTTATCTCGGCCTTACCGCACCCGGACCGGGTAT
TTCCTTTCCCAGCACTTGGACTCAGTGGACGAAGCAGACTTCGAAGACGT
AGCTGAGATGGTTGTTAATATGCACGTACAAGAGCGAGATTACTACGCCC
CCCCTCTCGCGTACTTTAAGCACTTGGAGCAGGTACGTTGTTCCACCTTT
CTACTTTCTCTCCCTCCGTTCCTCCCTCTCTCCCTTCCTCCCTCCCATCC
TGGATCCGTGTGTAAGCGTCGGCCACCAGCAGCTCATGCTTTCCCTCTCA
CACGACCCTCCGTCCCTCCCTTCTTGCCTCCCTCTCCCAGGACCTCATCC
TTGCCCACCGTCGTCAAGGCTCTGTTCGATGGTTCTCGAAAGTCGTCCAG
CAGGTCCAGGCCAACCGCGAGACCATCCCCACTGCCACCAATTTCCTCGA
TCGCTACCTCGCCGCCCTTCTCTACCCTCCCCTTGCCGGACCTTTCGCCA
CCTCGGCCACCACCACCTCTACAGCTGCTCCTGCTCCTGCGGCTTCTGCT
CCTGCTGGTCCTGTGGGGATGACGGTGGCAGGCACCCGTTCCACAGCTGC
AGAGACCGCCAACAGCAGTAACATTGACAGCAGCAGCAGCAACAGCAGCA
GTAGTCCAACCACCACGCCGTTTTTCCTGTGTGACGAGCGGGTCTTCGAG
AAGCTGGCCGTGTGCGCCTTCATCCTTGCCATGAAAATGCAGCAAGGGGA
CAGCACTTCCAATGTCGCCAAAAAGCTTGAAAATTTGACGTCCGCCTCCC
TCCTTACACCTGGAGCGCTCTGCGATATGGAATTTCGGATGATGGGAGCC
CTTGGCCGTTACTTGAACCCCCCAACGGCCGGGACGTTAATTCATCATCT
GCTCCACTTCCTCCCGGCTCATGAAGGGAGGGAAGGAGGGCGTCAGTCGC
CGGCTTCAGAAGGCCTGGGAGGACGAGGAGACAGGGAGGGAGGAAGGGAT
GGAGGGGTGAAGAACAAAGGACTCTTTTTAGCCCTGGATGACCATGCCAA
TGACCTGGCATTGATGGCCCTCGACACGCCGGGGTTAATCAAATTCCCTG
TGAGTGTGATTGCCGTTGCCGCCATCCTGGCCTCCTTCGCCTGGGTCCGG
TCCTCGATGAAAGGGGAGGGGGGGAGGGAGGAAGGGGAGGGGTTGGATCC
GACTCTGGAGATGCAGTGGCTTCAGACGCTGGACGCCAACG back to topCoding sequence (CDS) from alignment at scaffold_15:134045..136185- >mRNA_6252 ID=mRNA_6252|Name=jgi.p|Nanoce1779_2|631420|organism=Nannochloropsis oceanica|type=CDS|length=5238bp|location=Sequence derived from alignment at scaffold_15:134045..136185- (Nannochloropsis oceanica)
GACCTCATCCTTGCCCACCGTCGTCAAGGCTCTGTTCGATGGTTCTCGAA
AGTCGTCCAGCAGGTCCAGGCCAACCGCGAGACCATCCCCACTGCCACCA
ATTTCCTCGATCGCTACCTCGCCGCCCTTCTCTACCCTCCCCTTGCCGGA
CCTTTCGCCACCTCGGCCACCACCACCTCTACAGCTGCTCCTGCTCCTGC
GGCTTCTGCTCCTGCTGGTCCTGTGGGGATGACGGTGGCAGGCACCCGTT
CCACAGCTGCAGAGACCGCCAACAGCAGTAACATTGACAGCAGCAGCAGC
AACAGCAGCAGTAGTCCAACCACCACGCCGTTTTTCCTGTGTGACGAGCG
GGTCTTCGAGAAGCTGGCCGTGTGCGCCTTCATCCTTGCCATGAAAATGC
AGCAAGGGGACAGCACTTCCAATGTCGCCAAAAAGCTTGAAAATTTGACG
TCCGCCTCCCTCCTTACACCTGGAGCGCTCTGCGATATGGAATTTCGGAT
GATGGGAGCCCTTGGCCGTTACTTGAACCCCCCAACGGCCGGGACGTTAA
TTCATCATCTGCTCCACTTCCTCCCGGCTCATGAAGGGAGGGAAGGAGGG
CGTCAGTCGCCGGCTTCAGAAGGCCTGGGAGGACGAGGAGACAGGGAGGG
AGGAAGGGATGGAGGGGTGAAGAACAAAGGACTCTTTTTAGCCCTGGATG
ACCATGCCAATGACCTGGCATTGATGGCCCTCGACACGCCGGGGTTAATC
AAATTCCCTGTGAGTGTGATTGCCGTTGCCGCCATCCTGGCCTCCTTCGC
CTGGGTCCGGTCCTCGATGAAAGGGGAGGGGGGGAGGGAGGAAGGGGAGG
GGTTGGATCCGACTCTGGAGATGCAGTGGCTTCAGACGCTGGACGCCAAC
ACACATCCTGCGACCGTGTACCAGCACCAGTATGGCCACGGAGCCGTCGT
CCCGCCTCATCCGCTCCTTTCCCAGCAACCACCGCAGCCGCAGCAGCCGC
AGCTTTGTTTTGCTGCCTCCCATGCCCTTCCTCCTTTCCCCGCCCCGATG
GCTGTGATGGCGATTACAGGGGTCCCTCCGACTGCATCCGTCGCACGCCC
GAGTATTGCCCCTTTCCACCCCTCCTCGAGCCTACGCAACGTCCTTCCTA
GCGGGCCACCACAACAACAACACAAACCTCCCCCTCCGACCCTCCCACCT
CCTCTCCCTTCCCGGGCATCTCTCGGGCGCACGCAAAGCATGCCCGCTCT
TTCCCATATCCCTCCTCCCCCTCCTCCCCACCTGCTGCGACAACGCTCCT
ACTCCTCCTTATCTCGGCCTTACCGCACCCGGACCGGGTATTTCCTTTCC
CAGCACTTGGACTCAGTGGACGAAGCAGACTTCGAAGACGTAGCTGAGAT
GGTTGTTAATATGCACGTACAAGAGCGAGATTACTACGCCCCCCCTCTCG
CGTACTTTAAGCACTTGGAGCAGATGATGCCGGGCGACGTGTTGCTTAGC
AACAGCATCGGCGGGGGGCGTCTCGCTTCCTTCTCCGACAATCCCAGGCC
GTCCACCGCTTCGTATCATCACCACTACCCGCAGCCCCTGCAAATGCAGC
ACCAGGAAGAGAAGAATGAAGAGGAAGAGGAGGAGAAAGATTGCACGGAC
TTGTATATGCTGCGCGACGACGACGGAAGCAAAAGCCTCAACTGCGACGA
GGAGCTCGGGGAGGAGGATGCCAACGAGACCGCCTTCGCTGCCGAGGACC
TCATCCTTGCCCACCGTCGTCAAGGCTCTGTTCGATGGTTCTCGAAAGTC
GTCCAGCAGGTCCAGGCCAACCGCGAGACCATCCCCACTGCCACCAATTT
CCTCGATCGCTACCTCGCCGCCCTTCTCTACCCTCCCCTTGCCGGACCTT
TCGCCACCTCGGCCACCACCACCTCTACAGCTGCTCCTGCTCCTGCGGCT
TCTGCTCCTGCTGGTCCTGTGGGGATGACGGTGGCAGGCACCCGTTCCAC
AGCTGCAGAGACCGCCAACAGCAGTAACATTGACAGCAGCAGCAGCAACA
GCAGCAGTAGTCCAACCACCACGCCGTTTTTCCTGTGTGACGAGCGGGTC
TTCGAGAAGCTGGCCGTGTGCGCCTTCATCCTTGCCATGAAAATGCAGCA
AGGGGACAGCACTTCCAATGTCGCCAAAAAGCTTGAAAATTTGACGTCCG
CCTCCCTCCTTACACCTGGAGCGCTCTGCGATATGGAATTTCGGATGATG
GGAGCCCTTGGCCGTTACTTGAACCCCCCAACGGCCGGGACGTTAATTCA
TCATCTGCTCCACTTCCTCCCGGCTCATGAAGGGAGGGAAGGAGGGCGTC
AGTCGCCGGCTTCAGAAGGCCTGGGAGGACGAGGAGACAGGGAGGGAGGA
AGGGATGGAGGGGTGAAGAACAAAGGACTCTTTTTAGCCCTGGATGACCA
TGCCAATGACCTGGCATTGATGGCCCTCGACACGCCGGGGTTAATCAAAT
TCCCTGTGAGTGTGATTGCCGTTGCCGCCATCCTGGCCTCCTTCGCCTGG
GTCCGGTCCTCGATGAAAGGGGAGGGGGGGAGGGAGGAAGGGGAGGGGTT
GGATCCGACTCTGGAGATGCAGTGGCTTCAGACGCTGGACGCCAACACAC
ATCCTGCGACCGTGTACCAGCACCAGTATGGCCACGGAGCCGTCGTCCCG
CCTCATCCGCTCCTTTCCCAGCAACCACCGCAGCCGCAGCAGCCGCAGCT
TTGTTTTGCTGCCTCCCATGCCCTTCCTCCTTTCCCCGCCCCGATGGCTG
TGATGGCGATTACAGGGGTCCCTCCGACTGCATCCGTCGCACGCCCGAGT
ATTGCCCCTTTCCACCCCTCCTCGAGCCTACGCAACGTCCTTCCTAGCGG
GCCACCACAACAACAACACAAACCTCCCCCTCCGACCCTCCCACCTCCTC
TCCCTTCCCGGGCATCTCTCGGGCGCACGCAAAGCATGCCCGCTCTTTCC
CATATCCCTCCTCCCCCTCCTCCCCACCTGCTGCGACAACGCTCCTACTC
CTCCTTATCTCGGCCTTACCGCACCCGGACCGGGTATTTCCTTTCCCAGC
ACTTGGACTCAGTGGACGAAGCAGACTTCGAAGACGTAGCTGAGATGGTT
GTTAATATGCACGTACAAGAGCGAGATTACTACGCCCCCCCTCTCGCGTA
CTTTAAGCACTTGGAGCAGATGATGCCGGGCGACGTGTTGCTTAGCAACA
GCATCGGCGGGGGGCGTCTCGCTTCCTTCTCCGACAATCCCAGGCCGTCC
ACCGCTTCGTATCATCACCACTACCCGCAGCCCCTGCAAATGCAGCACCA
GGAAGAGAAGAATGAAGAGGAAGAGGAGGAGAAAGATTGCACGGACTTGT
ATATGCTGCGCGACGACGACGGAAGCAAAAGCCTCAACTGCGACGAGGAG
CTCGGGGAGGAGGATGCCAACGAGACCGCCTTCGCTGCCGAGGACCTCAT
CCTTGCCCACCGTCGTCAAGGCTCTGTTCGATGGTTCTCGAAAGTCGTCC
AGCAGGTCCAGGCCAACCGCGAGACCATCCCCACTGCCACCAATTTCCTC
GATCGCTACCTCGCCGCCCTTCTCTACCCTCCCCTTGCCGGACCTTTCGC
CACCTCGGCCACCACCACCTCTACAGCTGCTCCTGCTCCTGCGGCTTCTG
CTCCTGCTGGTCCTGTGGGGATGACGGTGGCAGGCACCCGTTCCACAGCT
GCAGAGACCGCCAACAGCAGTAACATTGACAGCAGCAGCAGCAACAGCAG
CAGTAGTCCAACCACCACGCCGTTTTTCCTGTGTGACGAGCGGGTCTTCG
AGAAGCTGGCCGTGTGCGCCTTCATCCTTGCCATGAAAATGCAGCAAGGG
GACAGCACTTCCAATGTCGCCAAAAAGCTTGAAAATTTGACGTCCGCCTC
CCTCCTTACACCTGGAGCGCTCTGCGATATGGAATTTCGGATGATGGGAG
CCCTTGGCCGTTACTTGAACCCCCCAACGGCCGGGACGTTAATTCATCAT
CTGCTCCACTTCCTCCCGGCTCATGAAGGGAGGGAAGGAGGGCGTCAGTC
GCCGGCTTCAGAAGGCCTGGGAGGACGAGGAGACAGGGAGGGAGGAAGGG
ATGGAGGGGTGAAGAACAAAGGACTCTTTTTAGCCCTGGATGACCATGCC
AATGACCTGGCATTGATGGCCCTCGACACGCCGGGGTTAATCAAATTCCC
TGTGAGTGTGATTGCCGTTGCCGCCATCCTGGCCTCCTTCGCCTGGGTCC
GGTCCTCGATGAAAGGGGAGGGGGGGAGGGAGGAAGGGGAGGGGTTGGAT
CCGACTCTGGAGATGCAGTGGCTTCAGACGCTGGACGCCAACACACATCC
TGCGACCGTGTACCAGCACCAGTATGGCCACGGAGCCGTCGTCCCGCCTC
ATCCGCTCCTTTCCCAGCAACCACCGCAGCCGCAGCAGCCGCAGCTTTGT
TTTGCTGCCTCCCATGCCCTTCCTCCTTTCCCCGCCCCGATGGCTGTGAT
GGCGATTACAGGGGTCCCTCCGACTGCATCCGTCGCACGCCCGAGTATTG
CCCCTTTCCACCCCTCCTCGAGCCTACGCAACGTCCTTCCTAGCGGGCCA
CCACAACAACAACACAAACCTCCCCCTCCGACCCTCCCACCTCCTCTCCC
TTCCCGGGCATCTCTCGGGCGCACGCAAAGCATGCCCGCTCTTTCCCATA
TCCCTCCTCCCCCTCCTCCCCACCTGCTGCGACAACGCTCCTACTCCTCC
TTATCTCGGCCTTACCGCACCCGGACCGGGTATTTCCTTTCCCAGCACTT
GGACTCAGTGGACGAAGCAGACTTCGAAGACGTAGCTGAGATGGTTGTTA
ATATGCACGTACAAGAGCGAGATTACTACGCCCCCCCTCTCGCGTACTTT
AAGCACTTGGAGCAGATGATGCCGGGCGACGTGTTGCTTAGCAACAGCAT
CGGCGGGGGGCGTCTCGCTTCCTTCTCCGACAATCCCAGGCCGTCCACCG
CTTCGTATCATCACCACTACCCGCAGCCCCTGCAAATGCAGCACCAGGAA
GAGAAGAATGAAGAGGAAGAGGAGGAGAAAGATTGCACGGACTTGTATAT
GCTGCGCGACGACGACGGAAGCAAAAGCCTCAACTGCGACGAGGAGCTCG
GGGAGGAGGATGCCAACGAGACCGCCTTCGCTGCCGAG back to top
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