jgi.p|Nanoce1779_2|594322, mRNA_6251 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594322
Unique Name	mRNA_6251
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1866
Alignment location	scaffold_15:130397..132262 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594408
Track	FilteredModels2
ProteinId	594322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:130397..132262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594322	gene_6251	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594322	mRNA_6251-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6251	CDS_6251	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:130397..132262+
coding sequence from alignment at scaffold_15:130397..132262+

mRNA sequence

>mRNA_6251 ID=mRNA_6251|Name=jgi.p|Nanoce1779_2|594322|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
GGACCAAGGACAGCAAGAACGCTAGTGATGGATGCCGAGCACGCCGCCAT
ATGGACATTCCTGTCTTGCACTTTTGTGCGATGGATGGTGTGGGTGTAGA
AAGTGTGAGATGAGAAAGAAGGGAGGCAAGCGGTGAGGCAAGCGGTGAGG
CAAGCGTTGCTTGGTGTAAGACTGCTACCGACCCTGTGGGCAGGCAGAAG
CTACAGGCAAGCCCGGCACGATTTATCCTTGCCTTCTAACCTTTCCTTTC
ATTTGTTCAATATGTAACAGGCCCCCAGCGTTGTCGTCCTCAATTTCCTC
GTCCCGCACCTCCCCACTCCTCAGCAACGCCGCCCTTTCTACACCCCCAC
CCCTACTACCATCCACCCCCTCCCCTATGCCCGCGTCCGCGCCCCAAAAC
CACCACTATCACCATGACATCCAAGAGAATGCCCTGGCGCCAATGCCGCA
CCAGGTCGGGGGCCATCGACCCAAGACCGCGGACGAAGCCCCCTACATGC
TCCGACTTGAGCCCCCTCTCTCCGTCGCCTCATCCTCTTCTTCCTCGTCA
TCCTCCCCCCCACGACCGCGTCTTCTCAAGGTGGTCCAAGCAGGCGACAA
GGGTGAGAGGGAACTAGCATTTTATCAACGCCTGTTCAAGGAGGAAGAGG
GGGAAAAGAGGGAGGGCGGGAACGGGGACGCAGCCGAAGCCGAGCAGCAG
AGCACAGGGGGGATTTGGAAAGCTCTCCAGCCCTTCGTACCCTCCTTTTA
CGGAGTTCAGGCAATCCACGCAAACGGTCTTTCTCACCGATATCTCATCC
TCGAAGACCTTTCCCTTCCTCCCTCCTTCCCTCCTACCTGTAGCCTCCCC
ACGAAGAGCGACCCCAAGCCCTCCCTCCCTGCCTCTCTTATTGAGCATTA
TCCCTCCATTCTGGACGTTAAAATAGGACAGAGAAGCCATCCCCCATGGG
CACCGTCGGACAAAGTGGCCAGAGAACAGATAAAGCACCCGCACCAGAAG
GATGTGGGATTTCGAATTGTGGGGATGAAGATATATGAGGGAGGAGGAGG
AAGAGGGGAAAAAGGAGGAGCGGAAGAAGGAGGAACGGAAGGAGGAGAGA
GAAAAGAAGAGAACAAATTAGCATGTACCAGCTCCACGACGATAAGGAGA
GGGGGATATGTGAGTGAAGGGAAGGAGTATGGAAGAGGGTTGAGGCCCGG
AAAGGAGCTTAAGGAGGGGTTGGCGCGATTTTTCCTAAGGGGGATGAAAG
AAGGGAAGGAGGAAGAGGGGGTGTTGAAGCGATTAGATCTTTTTATAAAG
CGATTGGAGGGACTTAAGAAGTGGTTTTCTAGGCAGAGGTGCCTGAAATT
TTGGTCCTCGAGCTTGTTATTCGTCGATCACCGTTATTATGACTCTCAGC
ATAAGGATAAGGAGCAGGAGCAGGAGGAGCAGCAGCAGCAACTGCAGGGG
AACGGAGGAGAGAAGGGAGGAGGGAGAATAGGAGAGGTTTGGAAGGAGGG
AAGATGGCGGGTGGAGGAGGAAGACGTGGACTTGCGTATGATAGACTTCG
CACATGTGCAGATACGGGGGGAGGAAGGGGAGGGAGGATGGGAGGAAGGG
GATGTAAATTATATGTATGGGCTGTCCTCTCTTTTGCGGCATTTAAAGGA
GCTCCGGGAGGATGCGAAAGGAGTAGCAAGGAGCAGGCAGAGGAGCAAAT
GAGCGATTTTCATAGCATGAGCGATTTTCATAGCACATGTATCTCCTGAA
GACAACATGATTAGGAGTATATAATGGACCAGGGGAACTGAATCCTGAAT
CCTCTAGGGATTATCGACTTGTAATGCCGTTAAGAGGCAATTAAATAAAC
GTTTAATGTGTGCGTG

protein sequence of jgi.p|Nanoce1779_2|594322

>mRNA_6251-protein ID=mRNA_6251-protein|Name=jgi.p|Nanoce1779_2|594322|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPASAPQNHHYHHDIQENALAPMPHQVGGHRPKTADEAPYMLRLEPPLSV
ASSSSSSSSSPPRPRLLKVVQAGDKGERELAFYQRLFKEEEGEKREGGNG
DAAEAEQQSTGGIWKALQPFVPSFYGVQAIHANGLSHRYLILEDLSLPPS
FPPTCSLPTKSDPKPSLPASLIEHYPSILDVKIGQRSHPPWAPSDKVARE
QIKHPHQKDVGFRIVGMKIYEGGGGRGEKGGAEEGGTEGGERKEENKLAC
TSSTTIRRGGYVSEGKEYGRGLRPGKELKEGLARFFLRGMKEGKEEEGVL
KRLDLFIKRLEGLKKWFSRQRCLKFWSSSLLFVDHRYYDSQHKDKEQEQE
EQQQQLQGNGGEKGGGRIGEVWKEGRWRVEEEDVDLRMIDFAHVQIRGEE
GEGGWEEGDVNYMYGLSSLLRHLKELREDAKGVARSRQRSK*

mRNA from alignment at scaffold_15:130397..132262+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6251 ID=mRNA_6251|Name=jgi.p|Nanoce1779_2|594322|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_15:130397..132262+ (Nannochloropsis oceanica)
GGACCAAGGACAGCAAGAACGCTAGTGATGGATGCCGAGCACGCCGCCAT
ATGGACATTCCTGTCTTGCACTTTTGTGCGATGGATGGTGTGGGTGTAGA
AAGTGTGAGATGAGAAAGAAGGGAGGCAAGCGGTGAGGCAAGCGGTGAGG
CAAGCGTTGCTTGGTGTAAGACTGCTACCGACCCTGTGGGCAGGCAGAAG
CTACAGGCAAGCCCGGCACGATTTATCCTTGCCTTCTAACCTTTCCTTTC
ATTTGTTCAATATGTAACAGGCCCCCAGCGTTGTCGTCCTCAATTTCCTC
GTCCCGCACCTCCCCACTCCTCAGCAACGCCGCCCTTTCTACACCCCCAC
CCCTACTACCATCCACCCCCTCCCCTATGCCCGCGTCCGCGCCCCAAAAC
CACCACTATCACCATGACATCCAAGAGAATGCCCTGGCGCCAATGCCGCA
CCAGGTCGGGGGCCATCGACCCAAGACCGCGGACGAAGCCCCCTACATGC
TCCGACTTGAGCCCCCTCTCTCCGTCGCCTCATCCTCTTCTTCCTCGTCA
TCCTCCCCCCCACGACCGCGTCTTCTCAAGGTGGTCCAAGCAGGCGACAA
GGGTGAGAGGGAACTAGCATTTTATCAACGCCTGTTCAAGGAGGAAGAGG
GGGAAAAGAGGGAGGGCGGGAACGGGGACGCAGCCGAAGCCGAGCAGCAG
AGCACAGGGGGGATTTGGAAAGCTCTCCAGCCCTTCGTACCCTCCTTTTA
CGGAGTTCAGGCAATCCACGCAAACGGTCTTTCTCACCGATATCTCATCC
TCGAAGACCTTTCCCTTCCTCCCTCCTTCCCTCCTACCTGTAGCCTCCCC
ACGAAGAGCGACCCCAAGCCCTCCCTCCCTGCCTCTCTTATTGAGCATTA
TCCCTCCATTCTGGACGTTAAAATAGGACAGAGAAGCCATCCCCCATGGG
CACCGTCGGACAAAGTGGCCAGAGAACAGATAAAGCACCCGCACCAGAAG
GATGTGGGATTTCGAATTGTGGGGATGAAGATATATGAGGGAGGAGGAGG
AAGAGGGGAAAAAGGAGGAGCGGAAGAAGGAGGAACGGAAGGAGGAGAGA
GAAAAGAAGAGAACAAATTAGCATGTACCAGCTCCACGACGATAAGGAGA
GGGGGATATGTGAGTGAAGGGAAGGAGTATGGAAGAGGGTTGAGGCCCGG
AAAGGAGCTTAAGGAGGGGTTGGCGCGATTTTTCCTAAGGGGGATGAAAG
AAGGGAAGGAGGAAGAGGGGGTGTTGAAGCGATTAGATCTTTTTATAAAG
CGATTGGAGGGACTTAAGAAGTGGTTTTCTAGGCAGAGGTGCCTGAAATT
TTGGTCCTCGAGCTTGTTATTCGTCGATCACCGTTATTATGACTCTCAGC
ATAAGGATAAGGAGCAGGAGCAGGAGGAGCAGCAGCAGCAACTGCAGGGG
AACGGAGGAGAGAAGGGAGGAGGGAGAATAGGAGAGGTTTGGAAGGAGGG
AAGATGGCGGGTGGAGGAGGAAGACGTGGACTTGCGTATGATAGACTTCG
CACATGTGCAGATACGGGGGGAGGAAGGGGAGGGAGGATGGGAGGAAGGG
GATGTAAATTATATGTATGGGCTGTCCTCTCTTTTGCGGCATTTAAAGGA
GCTCCGGGAGGATGCGAAAGGAGTAGCAAGGAGCAGGCAGAGGAGCAAAT
GAGCGATTTTCATAGCATGAGCGATTTTCATAGCACATGTATCTCCTGAA
GACAACATGATTAGGAGTATATAATGGACCAGGGGAACTGAATCCTGAAT
CCTCTAGGGATTATCGACTTGTAATGCCGTTAAGAGGCAATTAAATAAAC
GTTTAATGTGTGCGTG

Coding sequence (CDS) from alignment at scaffold_15:130397..132262+

>mRNA_6251 ID=mRNA_6251|Name=jgi.p|Nanoce1779_2|594322|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_15:130397..132262+ (Nannochloropsis oceanica)
ATGCCCGCGTCCGCGCCCCAAAACCACCACTATCACCATGACATCCAAGA
GAATGCCCTGGCGCCAATGCCGCACCAGGTCGGGGGCCATCGACCCAAGA
CCGCGGACGAAGCCCCCTACATGCTCCGACTTGAGCCCCCTCTCTCCGTC
GCCTCATCCTCTTCTTCCTCGTCATCCTCCCCCCCACGACCGCGTCTTCT
CAAGGTGGTCCAAGCAGGCGACAAGGGTGAGAGGGAACTAGCATTTTATC
AACGCCTGTTCAAGGAGGAAGAGGGGGAAAAGAGGGAGGGCGGGAACGGG
GACGCAGCCGAAGCCGAGCAGCAGAGCACAGGGGGGATTTGGAAAGCTCT
CCAGCCCTTCGTACCCTCCTTTTACGGAGTTCAGGCAATCCACGCAAACG
GTCTTTCTCACCGATATCTCATCCTCGAAGACCTTTCCCTTCCTCCCTCC
TTCCCTCCTACCTGTAGCCTCCCCACGAAGAGCGACCCCAAGCCCTCCCT
CCCTGCCTCTCTTATTGAGCATTATCCCTCCATTCTGGACGTTAAAATAG
GACAGAGAAGCCATCCCCCATGGGCACCGTCGGACAAAGTGGCCAGAGAA
CAGATAAAGCACCCGCACCAGAAGGATGTGGGATTTCGAATTGTGGGGAT
GAAGATATATGAGGGAGGAGGAGGAAGAGGGGAAAAAGGAGGAGCGGAAG
AAGGAGGAACGGAAGGAGGAGAGAGAAAAGAAGAGAACAAATTAGCATGT
ACCAGCTCCACGACGATAAGGAGAGGGGGATATGTGAGTGAAGGGAAGGA
GTATGGAAGAGGGTTGAGGCCCGGAAAGGAGCTTAAGGAGGGGTTGGCGC
GATTTTTCCTAAGGGGGATGAAAGAAGGGAAGGAGGAAGAGGGGGTGTTG
AAGCGATTAGATCTTTTTATAAAGCGATTGGAGGGACTTAAGAAGTGGTT
TTCTAGGCAGAGGTGCCTGAAATTTTGGTCCTCGAGCTTGTTATTCGTCG
ATCACCGTTATTATGACTCTCAGCATAAGGATAAGGAGCAGGAGCAGGAG
GAGCAGCAGCAGCAACTGCAGGGGAACGGAGGAGAGAAGGGAGGAGGGAG
AATAGGAGAGGTTTGGAAGGAGGGAAGATGGCGGGTGGAGGAGGAAGACG
TGGACTTGCGTATGATAGACTTCGCACATGTGCAGATACGGGGGGAGGAA
GGGGAGGGAGGATGGGAGGAAGGGGATGTAAATTATATGTATGGGCTGTC
CTCTCTTTTGCGGCATTTAAAGGAGCTCCGGGAGGATGCGAAAGGAGTAG
CAAGGAGCAGGCAGAGGAGCAAATGA

Synonyms

Publications