jgi.p|Nanoce1779_2|87914, mRNA_6249 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|87914
Unique Name	mRNA_6249
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1357
Alignment location	scaffold_15:126998..128354 +

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Properties


Property Name	Value
TranscriptId	88000
Track	FilteredModels2
ProteinId	87914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:126998..128354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|87914	gene_6249	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|87914	mRNA_6249-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6249	CDS_6249	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:126998..128354+
coding sequence from alignment at scaffold_15:126998..128354+

mRNA sequence

>mRNA_6249 ID=mRNA_6249|Name=jgi.p|Nanoce1779_2|87914|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp
TCCTCTCATTGTCTTTTTTCTCCTCCCATCCTCCTCTCTCTCCTTACCCC
TCCCCTGGATAAGAAAAAAACAAAGGACCCTCCCCTAAAGAAATCGTCAA
ATACGCTTTTTTTGGCTTTGTAGCTATCATCCTCCTCATGGGGATGGGCT
GGCATCTCGGTCAACACCAGCGGAGACGAAACAATGGCCTTTCACCCACT
GATCTCGCCCGTGCCCGGCGCGCTGCTCATCAAGCCGCCTTCCCTCAGGA
CCCGGACAAACCAAGTATACTTTCCCTCGTTCAAGCAGAGGAGGATGCCT
TGCCCGGGGTACCCCGTCTTTTCACCTTTTCCGAGCTCCAGCAGGCAAAA
CACGACTATCTTGCATCCTCTTCCCCCTCCTCTTCCTCCCAACCTCCCAT
CTACCTCGCAATTGTTGGCCATGTCTTCGACGTCTCGAAAGGTGACCAAT
TCTACGCTCCACCGGACGAGAAGGAGGGAGGGAGGGAAGGCGGAGGCTAT
GGATTCTTTGCCTTCCGTGACGCGGCCCGCGCCTATGTCACAGGCGACTT
CTCGAAGGAGGGACTGAGGGAAGACGTAGAAGGGCTGAAGGAGGAAGAAT
GCCGGGGTGTGTGGCGGTGGGTGAATTTTTTCAAGGACAAGGAGGAATAC
CCCTTTGTGGGGAGGTTGGTGGGCATGTATTTTGACGCGGACGGGAGGCC
GACGAGGAGTTACTTGAATTTTAGGGCTTGTGTAGGGACGGGAGGGGGGG
GGAAGGGGGTAGGCGGGGAGGAGGGGGAGGAGGAGGCATGTGCGACCAGC
TGGGAGAGGGGAAAGGGACATACGGTTTGGTGCGAGGGATCAGATGGGAA
GGTGCCACGGAGGAGGTTGAAAGAGGGAGGCGGGGAGGCGAGGGGCCGGT
GTGTGTGTGTTGATTTGAAGGATGGGAAGGTGCACGCGGCGGAGGCGGAG
GGGACGTTGGTTGTCTACCCGGGCTGCGAGCCACAGAAGTCGATGTGTGC
GTTTGAGTGAGAAGGGGGAAGAGAGGAGGGAAGGAAGGGAGATGGGAGGG
AGGAGAATGAATTATATACTGAAGAATGGGTTGATGATGGAGGGACAGGA
TTAGGAGGAGGGAAAGGAGAGAAGACGATGAAGACGATGACGACAAAGAA
GAAGAAGAATGCGAATAAGAAGGTTACCTCCCACTCGGCCACGCGATCCA
GTATCAACTTTTACATTACTCGCGACAGATATGTTGTGTTGAAGCGCTTC
AACTAGCTCCCTACCATGCAGGAGGACCGAAATGTTGCTTCGAAAGGGGC
AGAGGTTGTACGCATTAAATGAACACAGGAAGCGAGTTGACACACATGAG
GTTCAAA

protein sequence of jgi.p|Nanoce1779_2|87914

>mRNA_6249-protein ID=mRNA_6249-protein|Name=jgi.p|Nanoce1779_2|87914|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MGMGWHLGQHQRRRNNGLSPTDLARARRAAHQAAFPQDPDKPSILSLVQA
EEDALPGVPRLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVS
KGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGL
KEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACVG
TGGGGKGVGGEEGEEEACATSWERGKGHTVWCEGSDGKVPRRRLKEGGGE
ARGRCVCVDLKDGKVHAAEAEGTLVVYPGCEPQKSMCAFE*

mRNA from alignment at scaffold_15:126998..128354+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6249 ID=mRNA_6249|Name=jgi.p|Nanoce1779_2|87914|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp|location=Sequence derived from alignment at scaffold_15:126998..128354+ (Nannochloropsis oceanica)
TCCTCTCATTGTCTTTTTTCTCCTCCCATCCTCCTCTCTCTCCTTACCCC
TCCCCTGGATAAGAAAAAAACAAAGGACCCTCCCCTAAAGAAATCGTCAA
ATACGCTTTTTTTGGCTTTGTAGCTATCATCCTCCTCATGGGGATGGGCT
GGCATCTCGGTCAACACCAGCGGAGACGAAACAATGGCCTTTCACCCACT
GATCTCGCCCGTGCCCGGCGCGCTGCTCATCAAGCCGCCTTCCCTCAGGA
CCCGGACAAACCAAGTATACTTTCCCTCGTTCAAGCAGAGGAGGATGCCT
TGCCCGGGGTACCCCGTCTTTTCACCTTTTCCGAGCTCCAGCAGGCAAAA
CACGACTATCTTGCATCCTCTTCCCCCTCCTCTTCCTCCCAACCTCCCAT
CTACCTCGCAATTGTTGGCCATGTCTTCGACGTCTCGAAAGGTGACCAAT
TCTACGCTCCACCGGACGAGAAGGAGGGAGGGAGGGAAGGCGGAGGCTAT
GGATTCTTTGCCTTCCGTGACGCGGCCCGCGCCTATGTCACAGGCGACTT
CTCGAAGGAGGGACTGAGGGAAGACGTAGAAGGGCTGAAGGAGGAAGAAT
GCCGGGGTGTGTGGCGGTGGGTGAATTTTTTCAAGGACAAGGAGGAATAC
CCCTTTGTGGGGAGGTTGGTGGGCATGTATTTTGACGCGGACGGGAGGCC
GACGAGGAGTTACTTGAATTTTAGGGCTTGTGTAGGGACGGGAGGGGGGG
GGAAGGGGGTAGGCGGGGAGGAGGGGGAGGAGGAGGCATGTGCGACCAGC
TGGGAGAGGGGAAAGGGACATACGGTTTGGTGCGAGGGATCAGATGGGAA
GGTGCCACGGAGGAGGTTGAAAGAGGGAGGCGGGGAGGCGAGGGGCCGGT
GTGTGTGTGTTGATTTGAAGGATGGGAAGGTGCACGCGGCGGAGGCGGAG
GGGACGTTGGTTGTCTACCCGGGCTGCGAGCCACAGAAGTCGATGTGTGC
GTTTGAGTGAGAAGGGGGAAGAGAGGAGGGAAGGAAGGGAGATGGGAGGG
AGGAGAATGAATTATATACTGAAGAATGGGTTGATGATGGAGGGACAGGA
TTAGGAGGAGGGAAAGGAGAGAAGACGATGAAGACGATGACGACAAAGAA
GAAGAAGAATGCGAATAAGAAGGTTACCTCCCACTCGGCCACGCGATCCA
GTATCAACTTTTACATTACTCGCGACAGATATGTTGTGTTGAAGCGCTTC
AACTAGCTCCCTACCATGCAGGAGGACCGAAATGTTGCTTCGAAAGGGGC
AGAGGTTGTACGCATTAAATGAACACAGGAAGCGAGTTGACACACATGAG
GTTCAAA

Coding sequence (CDS) from alignment at scaffold_15:126998..128354+

>mRNA_6249 ID=mRNA_6249|Name=jgi.p|Nanoce1779_2|87914|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_15:126998..128354+ (Nannochloropsis oceanica)
ATGGGGATGGGCTGGCATCTCGGTCAACACCAGCGGAGACGAAACAATGG
CCTTTCACCCACTGATCTCGCCCGTGCCCGGCGCGCTGCTCATCAAGCCG
CCTTCCCTCAGGACCCGGACAAACCAAGTATACTTTCCCTCGTTCAAGCA
GAGGAGGATGCCTTGCCCGGGGTACCCCGTCTTTTCACCTTTTCCGAGCT
CCAGCAGGCAAAACACGACTATCTTGCATCCTCTTCCCCCTCCTCTTCCT
CCCAACCTCCCATCTACCTCGCAATTGTTGGCCATGTCTTCGACGTCTCG
AAAGGTGACCAATTCTACGCTCCACCGGACGAGAAGGAGGGAGGGAGGGA
AGGCGGAGGCTATGGATTCTTTGCCTTCCGTGACGCGGCCCGCGCCTATG
TCACAGGCGACTTCTCGAAGGAGGGACTGAGGGAAGACGTAGAAGGGCTG
AAGGAGGAAGAATGCCGGGGTGTGTGGCGGTGGGTGAATTTTTTCAAGGA
CAAGGAGGAATACCCCTTTGTGGGGAGGTTGGTGGGCATGTATTTTGACG
CGGACGGGAGGCCGACGAGGAGTTACTTGAATTTTAGGGCTTGTGTAGGG
ACGGGAGGGGGGGGGAAGGGGGTAGGCGGGGAGGAGGGGGAGGAGGAGGC
ATGTGCGACCAGCTGGGAGAGGGGAAAGGGACATACGGTTTGGTGCGAGG
GATCAGATGGGAAGGTGCCACGGAGGAGGTTGAAAGAGGGAGGCGGGGAG
GCGAGGGGCCGGTGTGTGTGTGTTGATTTGAAGGATGGGAAGGTGCACGC
GGCGGAGGCGGAGGGGACGTTGGTTGTCTACCCGGGCTGCGAGCCACAGA
AGTCGATGTGTGCGTTTGAGTGA

Synonyms

Publications