jgi.p|Nanoce1779_2|594312, mRNA_6248 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594312
Unique NamemRNA_6248
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_15:123922..126227 -

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Properties
Property NameValue
TranscriptId594398
TrackFilteredModels2
ProteinId594312
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:123922..126227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594312gene_6248Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594312mRNA_6248-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6248CDS_6248Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6248 ID=mRNA_6248|Name=jgi.p|Nanoce1779_2|594312|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ACAGCTACAAGCGTTCATCATGACCATCGTCATCAGTATCCTTTTTCCTG
ATTAATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGAT
ATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGGTGTGCGGCGGCACC
GGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAAC
TATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGT
CGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCA
CACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGAC
TGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCC
TCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTT
ACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGC
ATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAAT
TCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTG
TTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCC
TGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGG
ACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGAC
TACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGA
TGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAAC
AACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCAC
GCGTGCGGACGAAAAGGACTGCTGGATTCGCATTTACACCCGTCGGAGGG
GATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAG
GGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTT
GCGGCGAAGCTTGGCCTGGGCAATATGATCAACGATTCCCGCGCCCCCGG
GAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGACCTCCCTC
CACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTCCCTGGGC
GATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGGAGGTGCC
CGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGCCCGTTTG
GCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAGAAAGAACGA
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protein sequence of jgi.p|Nanoce1779_2|594312

>mRNA_6248-protein ID=mRNA_6248-protein|Name=jgi.p|Nanoce1779_2|594312|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MRFLIRRLLPIASYRYRCCRPLPSRGEVCGGTGTSRNIQVTWLQPYHRTI
FEYFWRPKPVSSLPLSSGNKEDGPSSSTPSPPHVHHDLYDKQTLWGAKTG
VGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSRHRRYTSSSSSGHTAL
STFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPG
LMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDG
CPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGM
GEGGGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMINDSRAPGS
YNAEFHLCELPRDLPPHLLRFVPNLHFSDSLGDRRYCVLVTAAQDLEVPV
GGPPLELFVPYASPFGGVCKHGFPLL*
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mRNA from alignment at scaffold_15:123922..126227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6248 ID=mRNA_6248|Name=jgi.p|Nanoce1779_2|594312|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp|location=Sequence derived from alignment at scaffold_15:123922..126227- (Nannochloropsis oceanica)
ACAGCTACAAGCGTTCATCATGACCATCGTCATCAGTATCCTTTTTCCTG
ATTAATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGAT
ATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGGTGTGCGGCGGCACC
GGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAAC
TATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGT
CGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCA
CACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGAC
TGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCC
TCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTT
ACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGC
ATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAAT
TCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTG
TTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCC
TGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGG
ACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGAC
TACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGA
TGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAAC
AACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCAC
GCGTGCGGACGAAAAGGACTGCTGGATTCGCATTTACACCCGTCGGAGGG
GATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAG
GGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTT
GCGGCGAAGCTTGGCCTGGGCAATATGAGTAAGTGAGGAGGTTGAGGATG
GAGAGGAGGGATGGATGTCTATTGTCTGCGTGCACCCGTGCGTGAGTATG
CGGGTGGGTGGGTACGGGTGGGTGTGGATATGGGTGTCGTAATGGTGCTT
GCAGAGGTAAGTAAGTATGTATGCTGGCGACAAGTGATGGGAAAGAGGGA
GGGGGGGAGGAAGGGGGGGGGGGGGGGGGGGGGGATTGAAAGGACGGAGA
AGGAGTGAAATCCCCTTTCCTTTCCCGTGGCTGTTCTCCCCTCCTTCCCC
GGTGACCTTTCATAGGGGTCTCTCCCTCTTCTTTTTTGCCTGTTTTCCCT
TCAACAACGAATGTAACAACAGCTCGTACCCCCTTTGGCCTGCGCCAAAA
AAGGGAAGGCATTACGTGGCGGCGCAATCAATCATTCTTTACCGACGCTC
CTGGCCATGGGGTGGACGAGAAGATGCAGAGCTGCCACGAACCAGAGCAC
GTGAGAGGAGAGGGTGATGAAGAATACCACCACCAGCAGCATCAACAGAA
GCAACAGCAGCAGCAGCAGCCGCATAGATGTGAGGCATGCTTGTGATGGC
TGTATGCTTGTAAATGTTACGGAGTAGATGAAGTGGTAGTAGTAATAATA
GTAATAATAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTAGTAGAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGTTC
CCGGTTCTTCCTCATGCGAAAGTTGACGGATAAAATATGAAGCTAAAAAC
ATCGTCCTCTCGGAAGCTTATCACATTCATCTACTTGCCACCCGCCCCCT
CTCTCCCTCCTCTCCTCCCTCTCCCTTACCAAAACCACAGTCAACGATTC
CCGCGCCCCCGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTC
GCGACCTCCCTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCG
GATTCCCTGGGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGA
CTTGGAGGTGCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACG
CGAGCCCGTTTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAGAAA
GAACGA
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Coding sequence (CDS) from alignment at scaffold_15:123922..126227-

>mRNA_6248 ID=mRNA_6248|Name=jgi.p|Nanoce1779_2|594312|organism=Nannochloropsis oceanica|type=CDS|length=2562bp|location=Sequence derived from alignment at scaffold_15:123922..126227- (Nannochloropsis oceanica)
TCAACGATTCCCGCGCCCCCGGGAGCTACAATGCTGAGTTCCACCTGTGT
GAGCTCCCTCGCGACCTCCCTCCACACCTCCTTCGCTTTGTGCCTAACCT
GCATTTTTCGGATTCCCTGGGCGATCGCCGGTATTGCGTGTTGGTGACAG
CGGCGCAGGACTTGGAGGTGCCCGTGGGAGGACCGCCGCTGGAGTTATTT
GTGCCATACGCGAGCCCGTTTGGCGGCGTGTGCAAGCATGGGTTTCCATT
GCTCTAGATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATC
GATATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGGTGTGCGGCGGC
ACCGGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCG
AACTATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGT
TGTCGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCG
CCACACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAA
GACTGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCC
TCCTCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCAC
TTTACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACAC
GGCATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGA
AATTCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGT
CTGTTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTA
CCCTGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTA
TGGACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAAC
GACTACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCT
CGATGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACC
AACAACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCT
CACGCGTGCGGACGAAAAGGACTGCTGGATTCGCATTTACACCCGTCGGA
GGGGATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGG
AAGGGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATAT
TTTGCGGCGAAGCTTGGCCTGGGCAATATGATCAACGATTCCCGCGCCCC
CGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGACCTCC
CTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTCCCTG
GGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGGAGGT
GCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGCCCGT
TTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAGATGCGATTCCTC
ATTCGTCGCCTGCTCCCGATCGCGTCCTATCGATATCGGTGTTGCCGCCC
ACTTCCTAGCCGCGGGGAGGTGTGCGGCGGCACCGGTACCAGTCGCAATA
TCCAGGTCACGTGGCTACAGCCCTACCATCGAACTATCTTCGAATACTTC
TGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGTCGTCTGGAAACAAAGA
AGATGGCCCGTCTTCCTCCACTCCCTCACCGCCACACGTGCACCACGACC
TTTACGATAAGCAAACCCTCTGGGGTGCCAAGACTGGTGTTGGAAGCAAG
ATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCCTCGACAAGCTTGAAAA
GGCACATCTGTGCACCGAGCATTTGCTGCACTTTACCAGCCGCCATCGCC
GCTACACTTCCAGCAGCAGCAGCGGCCACACGGCATTGTCCACCTTCCCC
TTTCTCGAAGAGCTGGTGGATGAGCATTGGAAATTCCGTCTCAAACGAAG
TCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTGTTTCTGACACGAGGAA
CAATTAAAGCCGGAGACGTGATTACATGCTACCCTGGCCTCATGTACCGT
ATCCCTTACGATCTCGAAATCTGCATGCCTATGGACGAGGTCTCCTTCAC
CCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGACTACCTTCTCCGATTTC
ATCACGCTGACACCAATCAGCACTTGCTCCTCGATGGCTGCCCTCGGGGA
ATCTCCGCCCTGAATTTCATCAGCGCAAACCAACAACGAGGCCGCCCCTG
GGCGAATATGGAGTGGTTGGAGAGTAATTCTCACGCGTGCGGACGAAAAG
GACTGCTGGATTCGCATTTACACCCGTCGGAGGGGATGGGAGAGGGAGGA
GGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAGGGGGGGAGTATGTGAG
GGTCCCGACGGTTTATGACACGAGCAAATATTTTGCGGCGAAGCTTGGCC
TGGGCAATATGA
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Synonyms
Publications