jgi.p|Nanoce1779_2|594307, mRNA_6247 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594307
Unique NamemRNA_6247
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length803
Alignment locationscaffold_15:122505..123307 +

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Properties
Property NameValue
TranscriptId594393
TrackFilteredModels2
ProteinId594307
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:122505..123307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594307gene_6247Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594307mRNA_6247-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6247CDS_6247Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6247 ID=mRNA_6247|Name=jgi.p|Nanoce1779_2|594307|organism=Nannochloropsis oceanica|type=mRNA|length=803bp
GTGAGATTGATGCAGGAACTGGAAGGGATGGAGGATCGCTTGGGAAAAGC
GGAGGAGAGCCTAGCGGCTGCTGCTGCTGCTGCTGTTGCTGAATCTGCTC
CTGTCGAAGAGCCCGAAACGACAGCAGCAGCAGAGGAAGGGATGGGCGGC
ATTCACACCCCTGCAAAGGTGAAAGCCAGCACAACTTCCACCGGCACCAG
CATGACACCTCATACCCCTGTCCCTGCAGCAGCAGCTGCTGCTGCTGCCC
CTTCCTCATCCGCTGTTGCCATGCAGACCACTGCCGCCCTCCGTCGTCTC
CAAGCGGAGCTTCTTCAAACCAAAGCGCAGCTAGACACAGCCAACACCAA
CACCACGCTTCTACAACGTTACATCGCCACTCGTCGGCTTCAGAAAACGG
ATACAATGACAGCATCAGTCGCGGCAGTTAATACTTCCTCACCGGGAGGG
AGTGAGGAGGAAGGTAAGGAGGGGCCAGCGAGAGCGGCGGCTGAGCCGTG
TGCTTCTCCTGCCTCGGTGTTGGCGTCCAGCAAGAGTAGAGGACGTTTGC
TCTTCTCTCCTCCTTCTTCCTCTCCCGCTGCGAGTGCATGTAGTGCCACC
GCAACGATAGGTGGCGACAGGGTGACTGAAACGCCTTCCCCCTCCTCTTC
GTCCTTGTTTTCCTTCGAGAAGGCTGTCAACTTCTTCTCCTTTGCTTCGT
CTTCCACAGCGGCAGCAGCAGCAGCGGCAGTAGCAGCCGCACCGGTGGGG
GATGAGACACATGTGGGGATTTAAAGAGAGGTTTGCAAGGAGGAGAAGAG
GCG
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protein sequence of jgi.p|Nanoce1779_2|594307

>mRNA_6247-protein ID=mRNA_6247-protein|Name=jgi.p|Nanoce1779_2|594307|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MQELEGMEDRLGKAEESLAAAAAAAVAESAPVEEPETTAAAEEGMGGIHT
PAKVKASTTSTGTSMTPHTPVPAAAAAAAAPSSSAVAMQTTAALRRLQAE
LLQTKAQLDTANTNTTLLQRYIATRRLQKTDTMTASVAAVNTSSPGGSEE
EGKEGPARAAAEPCASPASVLASSKSRGRLLFSPPSSSPAASACSATATI
GGDRVTETPSPSSSSLFSFEKAVNFFSFASSSTAAAAAAAVAAAPVGDET
HVGI*
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mRNA from alignment at scaffold_15:122505..123307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6247 ID=mRNA_6247|Name=jgi.p|Nanoce1779_2|594307|organism=Nannochloropsis oceanica|type=mRNA|length=803bp|location=Sequence derived from alignment at scaffold_15:122505..123307+ (Nannochloropsis oceanica)
GTGAGATTGATGCAGGAACTGGAAGGGATGGAGGATCGCTTGGGAAAAGC
GGAGGAGAGCCTAGCGGCTGCTGCTGCTGCTGCTGTTGCTGAATCTGCTC
CTGTCGAAGAGCCCGAAACGACAGCAGCAGCAGAGGAAGGGATGGGCGGC
ATTCACACCCCTGCAAAGGTGAAAGCCAGCACAACTTCCACCGGCACCAG
CATGACACCTCATACCCCTGTCCCTGCAGCAGCAGCTGCTGCTGCTGCCC
CTTCCTCATCCGCTGTTGCCATGCAGACCACTGCCGCCCTCCGTCGTCTC
CAAGCGGAGCTTCTTCAAACCAAAGCGCAGCTAGACACAGCCAACACCAA
CACCACGCTTCTACAACGTTACATCGCCACTCGTCGGCTTCAGAAAACGG
ATACAATGACAGCATCAGTCGCGGCAGTTAATACTTCCTCACCGGGAGGG
AGTGAGGAGGAAGGTAAGGAGGGGCCAGCGAGAGCGGCGGCTGAGCCGTG
TGCTTCTCCTGCCTCGGTGTTGGCGTCCAGCAAGAGTAGAGGACGTTTGC
TCTTCTCTCCTCCTTCTTCCTCTCCCGCTGCGAGTGCATGTAGTGCCACC
GCAACGATAGGTGGCGACAGGGTGACTGAAACGCCTTCCCCCTCCTCTTC
GTCCTTGTTTTCCTTCGAGAAGGCTGTCAACTTCTTCTCCTTTGCTTCGT
CTTCCACAGCGGCAGCAGCAGCAGCGGCAGTAGCAGCCGCACCGGTGGGG
GATGAGACACATGTGGGGATTTAAAGAGAGGTTTGCAAGGAGGAGAAGAG
GCG
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Coding sequence (CDS) from alignment at scaffold_15:122505..123307+

>mRNA_6247 ID=mRNA_6247|Name=jgi.p|Nanoce1779_2|594307|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_15:122505..123307+ (Nannochloropsis oceanica)
ATGCAGGAACTGGAAGGGATGGAGGATCGCTTGGGAAAAGCGGAGGAGAG
CCTAGCGGCTGCTGCTGCTGCTGCTGTTGCTGAATCTGCTCCTGTCGAAG
AGCCCGAAACGACAGCAGCAGCAGAGGAAGGGATGGGCGGCATTCACACC
CCTGCAAAGGTGAAAGCCAGCACAACTTCCACCGGCACCAGCATGACACC
TCATACCCCTGTCCCTGCAGCAGCAGCTGCTGCTGCTGCCCCTTCCTCAT
CCGCTGTTGCCATGCAGACCACTGCCGCCCTCCGTCGTCTCCAAGCGGAG
CTTCTTCAAACCAAAGCGCAGCTAGACACAGCCAACACCAACACCACGCT
TCTACAACGTTACATCGCCACTCGTCGGCTTCAGAAAACGGATACAATGA
CAGCATCAGTCGCGGCAGTTAATACTTCCTCACCGGGAGGGAGTGAGGAG
GAAGGTAAGGAGGGGCCAGCGAGAGCGGCGGCTGAGCCGTGTGCTTCTCC
TGCCTCGGTGTTGGCGTCCAGCAAGAGTAGAGGACGTTTGCTCTTCTCTC
CTCCTTCTTCCTCTCCCGCTGCGAGTGCATGTAGTGCCACCGCAACGATA
GGTGGCGACAGGGTGACTGAAACGCCTTCCCCCTCCTCTTCGTCCTTGTT
TTCCTTCGAGAAGGCTGTCAACTTCTTCTCCTTTGCTTCGTCTTCCACAG
CGGCAGCAGCAGCAGCGGCAGTAGCAGCCGCACCGGTGGGGGATGAGACA
CATGTGGGGATTTAA
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Synonyms
Publications