jgi.p|Nanoce1779_2|594306, mRNA_6246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594306
Unique NamemRNA_6246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length881
Alignment locationscaffold_15:121774..122654 -

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Properties
Property NameValue
TranscriptId594392
TrackFilteredModels2
ProteinId594306
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:121774..122654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594306gene_6246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594306mRNA_6246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6246CDS_6246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6246 ID=mRNA_6246|Name=jgi.p|Nanoce1779_2|594306|organism=Nannochloropsis oceanica|type=mRNA|length=881bp
GCCGCCCATCCCTTCCTCTGCTGCTGCTGTCGTTTCGGGCTCTTCGACAG
GAGCAGATTCAGCAACAGCAGCAGCAGCAGCAGCCGCTAGGCTCTCCTCC
GCTTTTCCCAAGCGATCCTCCATCCCTTCCAGTTCCTGCATCAATCTCAC
TCGCCCCACTTCTGCTTCTTGTGCCCTCATTTCTGTATCTTGCAGCTGGC
TACGCAATCCAGCCATCACTCCCTGTAGCCTCGCCGTCGACGCAGGGCTC
AATGCACCCTCCGGTAGCAGTGCCGCTGCTGCTGCTGCTTGTTGTTCTTG
TTGTTTGGCGAGGAGAAGGGCGCCTTCGGTCAACTGCACAGTAACCTCCA
ACTCTTGGATGGCCTGGCTGTCTCTCCTTGCCTGTTCCTCCGCCTCCGCC
CTTACAGCTGCCATCATAGCTTGTACCCTCCCTAGCTCCTCCTTCATCCC
TCCCATTTCATCCGACAGTGCTTTTTCGCGTTCCAAACCTTCTTGTCGCA
TTTCCTGGAGGGCCTCCGTCGTGACTGCGAGTTCGAGGCCGGCGAAGTCC
TTCACCGAAGCAAGGTCCTCAAGGAGGGATTGAATGGTGGCATCCGAGCA
AGCGTGCTGCTCCGGGTATTTTTCCATGGCGGGCGTTCCGACTTGAGTGC
CGCACTTGGTCAAGTTCAGATCATTGCTTGTCGAGGCGGTAATGGTCGAG
GTGGAGGAGGAGAGAGAGGGGGAGGACGGCGCTGCTGCTACTGCTTGCGC
TGTAGCCGTGGGAGGGTGAGACTCCAGAAGCTGAAAAGCATGCTCGACAA
GCCCCATGACCTGCTGGTGCTGTGTGTTGTTGGCCTCTTTGCCATCTTTT
TCCGTATCTGCTGCTGCTGCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|594306

>mRNA_6246-protein ID=mRNA_6246-protein|Name=jgi.p|Nanoce1779_2|594306|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MAWLSLLACSSASALTAAIIACTLPSSSFIPPISSDSAFSRSKPSCRISW
RASVVTASSRPAKSFTEARSSRRD*
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mRNA from alignment at scaffold_15:121774..122654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6246 ID=mRNA_6246|Name=jgi.p|Nanoce1779_2|594306|organism=Nannochloropsis oceanica|type=mRNA|length=881bp|location=Sequence derived from alignment at scaffold_15:121774..122654- (Nannochloropsis oceanica)
GCCGCCCATCCCTTCCTCTGCTGCTGCTGTCGTTTCGGGCTCTTCGACAG
GAGCAGATTCAGCAACAGCAGCAGCAGCAGCAGCCGCTAGGCTCTCCTCC
GCTTTTCCCAAGCGATCCTCCATCCCTTCCAGTTCCTGCATCAATCTCAC
TCGCCCCACTTCTGCTTCTTGTGCCCTCATTTCTGTATCTTGCAGCTGGC
TACGCAATCCAGCCATCACTCCCTGTAGCCTCGCCGTCGACGCAGGGCTC
AATGCACCCTCCGGTAGCAGTGCCGCTGCTGCTGCTGCTTGTTGTTCTTG
TTGTTTGGCGAGGAGAAGGGCGCCTTCGGTCAACTGCACAGTAACCTCCA
ACTCTTGGATGGCCTGGCTGTCTCTCCTTGCCTGTTCCTCCGCCTCCGCC
CTTACAGCTGCCATCATAGCTTGTACCCTCCCTAGCTCCTCCTTCATCCC
TCCCATTTCATCCGACAGTGCTTTTTCGCGTTCCAAACCTTCTTGTCGCA
TTTCCTGGAGGGCCTCCGTCGTGACTGCGAGTTCGAGGCCGGCGAAGTCC
TTCACCGAAGCAAGGTCCTCAAGGAGGGATTGAATGGTGGCATCCGAGCA
AGCGTGCTGCTCCGGGTATTTTTCCATGGCGGGCGTTCCGACTTGAGTGC
CGCACTTGGTCAAGTTCAGATCATTGCTTGTCGAGGCGGTAATGGTCGAG
GTGGAGGAGGAGAGAGAGGGGGAGGACGGCGCTGCTGCTACTGCTTGCGC
TGTAGCCGTGGGAGGGTGAGACTCCAGAAGCTGAAAAGCATGCTCGACAA
GCCCCATGACCTGCTGGTGCTGTGTGTTGTTGGCCTCTTTGCCATCTTTT
TCCGTATCTGCTGCTGCTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_15:121774..122654-

>mRNA_6246 ID=mRNA_6246|Name=jgi.p|Nanoce1779_2|594306|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_15:121774..122654- (Nannochloropsis oceanica)
ATGGCCTGGCTGTCTCTCCTTGCCTGTTCCTCCGCCTCCGCCCTTACAGC
TGCCATCATAGCTTGTACCCTCCCTAGCTCCTCCTTCATCCCTCCCATTT
CATCCGACAGTGCTTTTTCGCGTTCCAAACCTTCTTGTCGCATTTCCTGG
AGGGCCTCCGTCGTGACTGCGAGTTCGAGGCCGGCGAAGTCCTTCACCGA
AGCAAGGTCCTCAAGGAGGGATTGA
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Synonyms
Publications