jgi.p|Nanoce1779_2|594303, mRNA_6245 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594303
Unique NamemRNA_6245
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length834
Alignment locationscaffold_15:118751..119584 +

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Properties
Property NameValue
TranscriptId594389
TrackFilteredModels2
ProteinId594303
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:118751..119584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594303gene_6245Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594303mRNA_6245-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6245CDS_6245Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6245 ID=mRNA_6245|Name=jgi.p|Nanoce1779_2|594303|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
GCCGCCTCGAAGCTGACATCATGCCACTCCTCATTCGGCGCTTCCGGGTA
ACATGAGGTGGCCATACACCCACCAAAGAGCCCGTTCAATAGCCCCCCAC
CTCCCCCGGTTCCTCCCCGCTCCTCCTCCTCGTAGTCGACCTCCGTGAGG
GTAACGATCAAATTGCTCTCCCTCTCGTCATTCACCCCCATATTCTTCTT
CCCATGAATAAACGAATGCACGTGTGTCTTCAAAAAATGATCGTCCAGCA
AGGCCCCCTTCCCTTTCTCTCCTCCTGCCACCGTGGCGAGTTGCTGTCGG
ACCAACACCCCCTTCCCGTTCAACTCGATGTAATGCGTTTTCCTCCCCTC
CTTTCGTTGCCGCCCCGCGAGGATGGGAAACTTGTCCAAGACCCTGGCAA
GGGAAGACTTGAGGGCGTGCGCCGAGAGATAAGAAGGGAAGAAGTAGACG
ACTCGGAGGTTCATTCGTTGGAAGAGGACATCCACGCCTGCGAGCTCGAC
ACGGGGGCTGGGAGAGACCGAGGGCGAGGAGGAAGCGGTGGTTGGACGGA
CGTAGCTGTCCTTGATCACCTTAACCGTGACAGTCATGGCTTGGCCTTGG
TGTGGATTTGTAGAAACTTATATATGCCTATATGTATACACACACCGATG
TGCTGTTGAAGGGGAGGGCGTGGGGGTGATGGTCAGACTTGGTGCAGGAC
AGACGTATGCTTTCTTGGATGTGAGTGAGAAAGGCATGAGCTGCTAGGGG
CGGTTTGACATGATTGGCGGCCACAGCAGGTCGTTTGGTCTGAAAGAGGC
TATTGCGTGTTGTCAACCCTGTGCTTTTGTACTG
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protein sequence of jgi.p|Nanoce1779_2|594303

>mRNA_6245-protein ID=mRNA_6245-protein|Name=jgi.p|Nanoce1779_2|594303|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MNKRMHVCLQKMIVQQGPLPFLSSCHRGELLSDQHPLPVQLDVMRFPPLL
SLPPREDGKLVQDPGKGRLEGVRREIRREEVDDSEVHSLEEDIHACELDT
GAGRDRGRGGSGGWTDVAVLDHLNRDSHGLALVWICRNLYMPICIHTPMC
C*
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mRNA from alignment at scaffold_15:118751..119584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6245 ID=mRNA_6245|Name=jgi.p|Nanoce1779_2|594303|organism=Nannochloropsis oceanica|type=mRNA|length=834bp|location=Sequence derived from alignment at scaffold_15:118751..119584+ (Nannochloropsis oceanica)
GCCGCCTCGAAGCTGACATCATGCCACTCCTCATTCGGCGCTTCCGGGTA
ACATGAGGTGGCCATACACCCACCAAAGAGCCCGTTCAATAGCCCCCCAC
CTCCCCCGGTTCCTCCCCGCTCCTCCTCCTCGTAGTCGACCTCCGTGAGG
GTAACGATCAAATTGCTCTCCCTCTCGTCATTCACCCCCATATTCTTCTT
CCCATGAATAAACGAATGCACGTGTGTCTTCAAAAAATGATCGTCCAGCA
AGGCCCCCTTCCCTTTCTCTCCTCCTGCCACCGTGGCGAGTTGCTGTCGG
ACCAACACCCCCTTCCCGTTCAACTCGATGTAATGCGTTTTCCTCCCCTC
CTTTCGTTGCCGCCCCGCGAGGATGGGAAACTTGTCCAAGACCCTGGCAA
GGGAAGACTTGAGGGCGTGCGCCGAGAGATAAGAAGGGAAGAAGTAGACG
ACTCGGAGGTTCATTCGTTGGAAGAGGACATCCACGCCTGCGAGCTCGAC
ACGGGGGCTGGGAGAGACCGAGGGCGAGGAGGAAGCGGTGGTTGGACGGA
CGTAGCTGTCCTTGATCACCTTAACCGTGACAGTCATGGCTTGGCCTTGG
TGTGGATTTGTAGAAACTTATATATGCCTATATGTATACACACACCGATG
TGCTGTTGAAGGGGAGGGCGTGGGGGTGATGGTCAGACTTGGTGCAGGAC
AGACGTATGCTTTCTTGGATGTGAGTGAGAAAGGCATGAGCTGCTAGGGG
CGGTTTGACATGATTGGCGGCCACAGCAGGTCGTTTGGTCTGAAAGAGGC
TATTGCGTGTTGTCAACCCTGTGCTTTTGTACTG
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Coding sequence (CDS) from alignment at scaffold_15:118751..119584+

>mRNA_6245 ID=mRNA_6245|Name=jgi.p|Nanoce1779_2|594303|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_15:118751..119584+ (Nannochloropsis oceanica)
ATGAATAAACGAATGCACGTGTGTCTTCAAAAAATGATCGTCCAGCAAGG
CCCCCTTCCCTTTCTCTCCTCCTGCCACCGTGGCGAGTTGCTGTCGGACC
AACACCCCCTTCCCGTTCAACTCGATGTAATGCGTTTTCCTCCCCTCCTT
TCGTTGCCGCCCCGCGAGGATGGGAAACTTGTCCAAGACCCTGGCAAGGG
AAGACTTGAGGGCGTGCGCCGAGAGATAAGAAGGGAAGAAGTAGACGACT
CGGAGGTTCATTCGTTGGAAGAGGACATCCACGCCTGCGAGCTCGACACG
GGGGCTGGGAGAGACCGAGGGCGAGGAGGAAGCGGTGGTTGGACGGACGT
AGCTGTCCTTGATCACCTTAACCGTGACAGTCATGGCTTGGCCTTGGTGT
GGATTTGTAGAAACTTATATATGCCTATATGTATACACACACCGATGTGC
TGTTGA
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Synonyms
Publications