jgi.p|Nanoce1779_2|87804, mRNA_6244 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|87804
Unique NamemRNA_6244
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1084
Alignment locationscaffold_15:116729..118318 -

Link to JBrowse

Properties
Property NameValue
TranscriptId87890
TrackFilteredModels2
ProteinId87804
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:116729..118318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|87804gene_6244Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|87804mRNA_6244-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6244CDS_6244Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6244 ID=mRNA_6244|Name=jgi.p|Nanoce1779_2|87804|organism=Nannochloropsis oceanica|type=mRNA|length=1084bp
AGAGAGGGAGGGATTGAGGGAGTGAAAAAAAGGGGGGGGGGCTACTGCCT
GAAGTGCCCCCGAGATGGATTTTGGGCAGGCCGCGCACGTTTTTGTAAAC
GCTTAATATATTATCGAGGCCCGCGCTTCCTGCGCCCTCGTGATGATTCC
CCGCATGATTTTTAGCAGGCGGTACAATCAAGTGATTTCAAATGATTCCT
TCCTTTTGTGTCGGTCCCTCGCTATCTCTGTAGATTCCTCCCGCCATCGC
ATCTGCCCGTCTCTCCTCCCTCCCCCTTCCCCCGGGGCTGTGCTCGATGG
GCACCGTGAGTACTGCCCTTTTTATGGGCCGCTTTCTCCTTATGGCCATG
AGCAGCAAGTACGATTTTGTCAAGCTCAAATTTACGGGCAAGGAGCTGGA
GAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGGCCAAGGCCGGGG
ACGACATTTGGGTCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCC
ATCCTCTCCCCTTTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGG
GAGGGAGGGGGGGAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGA
TTGTGAATTACCGAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGGG
AATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCTGA
ACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCACGC
GCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGAAA
CAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGACGG
AAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGAGG
AGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGTTT
TTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCGAAAGGC
AATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGTAATTCA
CAGGTGGACGCGGCGAAAGGCAAACCTCTTCTAC
back to top

protein sequence of jgi.p|Nanoce1779_2|87804

>mRNA_6244-protein ID=mRNA_6244-protein|Name=jgi.p|Nanoce1779_2|87804|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MGTVSTALFMGRFLLMAMSSKYDFVKLKFTGKELENLKAAAMLPLVKAKA
GDDIWVSTSNALAAHLWPILSPLIATPGGEGREGGREGGRGADADLISLA
VIVNYRKALEGIGPMYYGNCVGLKRIQVDAPLLPEQPERSVQLEKALPSL
TRLALKIRKGVVVNEEAKQGYLDEAHYLQKALADGKIGNMQFGLMVRKGR
EEQGKEGRKRRGSSFFLFLWRYDYAVIHWWTRRKAISFSHLCSSHMMML*
back to top

mRNA from alignment at scaffold_15:116729..118318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6244 ID=mRNA_6244|Name=jgi.p|Nanoce1779_2|87804|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at scaffold_15:116729..118318- (Nannochloropsis oceanica)
AGAGAGGGAGGGATTGAGGGAGTGAAAAAAAGGGGGGGGGGCTACTGCCT
GAAGTGCCCCCGAGATGGATTTTGGGCAGGCCGCGCACGTTTTTGTAAAC
GCTTAATATATTATCGAGGCCCGCGCTTCCTGCGCCCTCGTGATGATTCC
CCGCATGATTTTTAGCAGGCGGTACAATCAAGTGATTTCAAATGATTCCT
TCCTTTTGTGTCGGTCCCTCGCTATCTCTGTAGATTCCTCCCGCCATCGC
ATCTGCCCGTCTCTCCTCCCTCCCCCTTCCCCCGGGGCTGTGCTCGATGG
GCACCGTGAGTACTGCCCTTTTTATGGGCCGCTTTCTCCTTATGGCCATG
AGCAGCAAGTACGATTTTGTCAAGGTAAGAGGGAGGGAGGGAGGGAGGGA
GGGATACAGGGAAGGAGAACATTCAAGAAGTCGTTGGTCTATAGGAATAT
ATACGTGGCCTTTCTCTCCGTTTCGTTGGTTGATACGGCTACGCAAACGT
TTGCCCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAGCTCAAATTT
ACGGGCAAGGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGT
CAAGGCCAAGGCCGGGGACGACATTTGGTAGGTGGACCAAAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGGTGGATTGGATATCCA
AGTCATTGCTGCTGCCCATCAACTCATGGTTGTCCGTCCGTCCTTCCCTC
CCTCCCTCCCTCCTCCAGGGTCTCCACCTCCAACGCCCTGGCCGCCCATT
TGTGGCCCATCCTCTCCCCTTTGATCGCCACGCCCGGCGGAGAAGGGAGG
GAGGGAGGGAGGGAGGGGGGGAGGGGGGCCGACGCGGACCTCATCTCGTT
GGCAGTGATTGTGAATTACCGAAAGGCCTTGGAAGGGATTGGGCCCATGT
ATTACGGTATGTGAGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATCAAGTAAGAGGAGGAGAGAAG
GAGAGACGGGAAGAGAAGGAGGTTGCGCGGCGAAGTTGGTACATTTTCCC
TATCGTTTCTTACTGTGATTAAATTAACACCTCTTCATTTGATTAAATTA
ACAGGGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCT
CCCTGAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCC
TCACGCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAG
GCGAAACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGC
TGACGGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGA
GGGAGGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTT
TTGTTTTTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCG
AAAGGCAATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGT
AATTCACAGGTGGACGCGGCGAAAGGCAAACCTCTTCTAC
back to top

Coding sequence (CDS) from alignment at scaffold_15:116729..118318-

>mRNA_6244 ID=mRNA_6244|Name=jgi.p|Nanoce1779_2|87804|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_15:116729..118318- (Nannochloropsis oceanica)
GGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCT
GAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCAC
GCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGA
AACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGAC
GGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGA
GGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGT
TTTTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCGAAAG
GCAATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGTAAGG
TCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCT
TTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGG
GAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACC
GAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGCTCAAATTTACGGG
CAAGGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGG
CCAAGGCCGGGGACGACATTTGATGGGCACCGTGAGTACTGCCCTTTTTA
TGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTTGTCAAG
GGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCT
GAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCAC
GCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGA
AACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGAC
GGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGA
GGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGT
TTTTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCGAAAG
GCAATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGTAAGG
TCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCT
TTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGG
GAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACC
GAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGCTCAAATTTACGGG
CAAGGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGG
CCAAGGCCGGGGACGACATTTGATGGGCACCGTGAGTACTGCCCTTTTTA
TGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTTGTCAAG
GGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCT
GAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCAC
GCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGA
AACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGAC
GGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGA
GGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGT
TTTTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCGAAAG
GCAATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGTAAGG
TCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCT
TTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGG
GAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACC
GAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGCTCAAATTTACGGG
CAAGGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGG
CCAAGGCCGGGGACGACATTTGATGGGCACCGTGAGTACTGCCCTTTTTA
TGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTTGTCAAG
GGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCT
GAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCAC
GCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGA
AACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGAC
GGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGA
GGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGT
TTTTGTGGCGATATGATTATGCTGTAATTCACTGGTGGACGCGGCGAAAG
GCAATTTCATTCTCTCATTTGTGTTCGTCTCATATGATGATGCTGTAAGG
TCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCT
TTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGG
GAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACC
GAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGCTCAAATTTACGGG
CAAGGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGG
CCAAGGCCGGGGACGACATTTGATGGGCACCGTGAGTACTGCCCTTTTTA
TGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTTGTCAAG
back to top
Synonyms
Publications