jgi.p|Nanoce1779_2|567000, mRNA_6241 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567000
Unique NamemRNA_6241
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_15:112673..113026 +

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Properties
Property NameValue
TranscriptId567086
TrackFilteredModels2
ProteinId567000
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:112673..113026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567000gene_6241Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567000mRNA_6241-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6241CDS_6241Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6241 ID=mRNA_6241|Name=jgi.p|Nanoce1779_2|567000|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGACCAACGCCCCCAGGGCGGCGTGCCTGTGTGGGATCAGTTGGGCCTT
GAGGTATCCTCTAGAAGCCGTCGTCTCTGACTCGTTATCATACCACGCCC
TACAGCACATGTATGACTCGCAGACCCACCATGAGTTCAGATATGGTCTT
CCTCTTTATTCGCATACGGTCAATCGTAATGGTTTGACACCAGAAGTGGA
CAACGTGATGGGAAAAGAAGGAAAGTGTCTTGCCCTCGGCGCCGTCTGTT
GCGACTCGCTGTCGGCGATGAAGTCAACTCAAGGTGCACCGTCGGCCTAT
CGGAGCGTCAAGATGACAAAACATTTGCACCTCAGCGCTCGGGAAGACGG
ATAA
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protein sequence of jgi.p|Nanoce1779_2|567000

>mRNA_6241-protein ID=mRNA_6241-protein|Name=jgi.p|Nanoce1779_2|567000|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MTNAPRAACLCGISWALRYPLEAVVSDSLSYHALQHMYDSQTHHEFRYGL
PLYSHTVNRNGLTPEVDNVMGKEGKCLALGAVCCDSLSAMKSTQGAPSAY
RSVKMTKHLHLSAREDG*
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mRNA from alignment at scaffold_15:112673..113026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6241 ID=mRNA_6241|Name=jgi.p|Nanoce1779_2|567000|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at scaffold_15:112673..113026+ (Nannochloropsis oceanica)
ATGACCAACGCCCCCAGGGCGGCGTGCCTGTGTGGGATCAGTTGGGCCTT
GAGGTATCCTCTAGAAGCCGTCGTCTCTGACTCGTTATCATACCACGCCC
TACAGCACATGTATGACTCGCAGACCCACCATGAGTTCAGATATGGTCTT
CCTCTTTATTCGCATACGGTCAATCGTAATGGTTTGACACCAGAAGTGGA
CAACGTGATGGGAAAAGAAGGAAAGTGTCTTGCCCTCGGCGCCGTCTGTT
GCGACTCGCTGTCGGCGATGAAGTCAACTCAAGGTGCACCGTCGGCCTAT
CGGAGCGTCAAGATGACAAAACATTTGCACCTCAGCGCTCGGGAAGACGG
ATAA
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Coding sequence (CDS) from alignment at scaffold_15:112673..113026+

>mRNA_6241 ID=mRNA_6241|Name=jgi.p|Nanoce1779_2|567000|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_15:112673..113026+ (Nannochloropsis oceanica)
ATGACCAACGCCCCCAGGGCGGCGTGCCTGTGTGGGATCAGTTGGGCCTT
GAGGTATCCTCTAGAAGCCGTCGTCTCTGACTCGTTATCATACCACGCCC
TACAGCACATGTATGACTCGCAGACCCACCATGAGTTCAGATATGGTCTT
CCTCTTTATTCGCATACGGTCAATCGTAATGGTTTGACACCAGAAGTGGA
CAACGTGATGGGAAAAGAAGGAAAGTGTCTTGCCCTCGGCGCCGTCTGTT
GCGACTCGCTGTCGGCGATGAAGTCAACTCAAGGTGCACCGTCGGCCTAT
CGGAGCGTCAAGATGACAAAACATTTGCACCTCAGCGCTCGGGAAGACGG
ATAA
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Synonyms
Publications