jgi.p|Nanoce1779_2|573564, mRNA_624 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573564
Unique NamemRNA_624
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length839
Alignment locationscaffold_2:44558..45396 -

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Properties
Property NameValue
TranscriptId573650
TrackFilteredModels2
ProteinId573564
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:44558..45396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573564gene_624Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573564mRNA_624-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_624CDS_624Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_624 ID=mRNA_624|Name=jgi.p|Nanoce1779_2|573564|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
ACAGGATATTCGCCATGACGATGTCTGGAAGAGTGGCTGCTATGAGGTGG
TGTCGGATATCCGCCTGTGCCTTGGGTTTGTTGTGCCTGTTTGGGCTGGC
CACGCTGTCCGCAGGTGAGAGTGGATGGAGAGGTCGAGGGAGGGAGGGCT
AGCCGACCGACGGTCACATTTCTGCGTCCCTAGAATCACTCTGCACACAC
ATGCACTCATGCTGTAGGCGGAAAGCGTGGCAAATGTCCAGGATTTATGT
CAAGAGCACCAGCAGCAGTAGGAGAACTCTCAAGAAGGCCTTCATCATCA
TCAGCATCATCATGCCACGCTGCAAGACGGACACCACCACCCACACCTTT
GACGCCACCTCTTCAAAGACACGCTATTAGTGCCAGCAGCAATAGTCGAC
GTGACGTAATGATCAAAGGTGGAGTTAGCACTTTGCTGGGGATGCTTGGC
CTGGCAACGACAAAACCACCTCGCATTGCTTCTGCCGCAGATGCCCCCGC
CGCCCCTGCAGCCCCTCCAACCGGCCCCAAGAAATGGATGAGCGGAAAGA
GTGAGAAACCACGAGGTAGCAAGGATCGAACAGGCACCAAGAAGGACAGC
AATTACTTAAGGTGTTTGAGTGATTGTACGACTGAATGTCGGAAGCCGGG
GCAAGGTCCGAGCAAGGACAATGCGGAGTGTTTGGAGGCTTGTCAAGATT
ACTGCTGTCAGACGTACGAACAGTGCACGTATACACAAAACTACGAAGGG
TAACACAGGAGTTGGGTCCAAAAACGCACGTAGATAACTGGCGAGATAGG
CAAAAATTGATAAAGTAATGAAGTCAACACAAACTTGAA
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protein sequence of jgi.p|Nanoce1779_2|573564

>mRNA_624-protein ID=mRNA_624-protein|Name=jgi.p|Nanoce1779_2|573564|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MSRAPAAVGELSRRPSSSSASSCHAARRTPPPTPLTPPLQRHAISASSNS
RRDVMIKGGVSTLLGMLGLATTKPPRIASAADAPAAPAAPPTGPKKWMSG
KSEKPRGSKDRTGTKKDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQ
DYCCQTYEQCTYTQNYEG*
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mRNA from alignment at scaffold_2:44558..45396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_624 ID=mRNA_624|Name=jgi.p|Nanoce1779_2|573564|organism=Nannochloropsis oceanica|type=mRNA|length=839bp|location=Sequence derived from alignment at scaffold_2:44558..45396- (Nannochloropsis oceanica)
ACAGGATATTCGCCATGACGATGTCTGGAAGAGTGGCTGCTATGAGGTGG
TGTCGGATATCCGCCTGTGCCTTGGGTTTGTTGTGCCTGTTTGGGCTGGC
CACGCTGTCCGCAGGTGAGAGTGGATGGAGAGGTCGAGGGAGGGAGGGCT
AGCCGACCGACGGTCACATTTCTGCGTCCCTAGAATCACTCTGCACACAC
ATGCACTCATGCTGTAGGCGGAAAGCGTGGCAAATGTCCAGGATTTATGT
CAAGAGCACCAGCAGCAGTAGGAGAACTCTCAAGAAGGCCTTCATCATCA
TCAGCATCATCATGCCACGCTGCAAGACGGACACCACCACCCACACCTTT
GACGCCACCTCTTCAAAGACACGCTATTAGTGCCAGCAGCAATAGTCGAC
GTGACGTAATGATCAAAGGTGGAGTTAGCACTTTGCTGGGGATGCTTGGC
CTGGCAACGACAAAACCACCTCGCATTGCTTCTGCCGCAGATGCCCCCGC
CGCCCCTGCAGCCCCTCCAACCGGCCCCAAGAAATGGATGAGCGGAAAGA
GTGAGAAACCACGAGGTAGCAAGGATCGAACAGGCACCAAGAAGGACAGC
AATTACTTAAGGTGTTTGAGTGATTGTACGACTGAATGTCGGAAGCCGGG
GCAAGGTCCGAGCAAGGACAATGCGGAGTGTTTGGAGGCTTGTCAAGATT
ACTGCTGTCAGACGTACGAACAGTGCACGTATACACAAAACTACGAAGGG
TAACACAGGAGTTGGGTCCAAAAACGCACGTAGATAACTGGCGAGATAGG
CAAAAATTGATAAAGTAATGAAGTCAACACAAACTTGAA
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Coding sequence (CDS) from alignment at scaffold_2:44558..45396-

>mRNA_624 ID=mRNA_624|Name=jgi.p|Nanoce1779_2|573564|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_2:44558..45396- (Nannochloropsis oceanica)
ATGTCAAGAGCACCAGCAGCAGTAGGAGAACTCTCAAGAAGGCCTTCATC
ATCATCAGCATCATCATGCCACGCTGCAAGACGGACACCACCACCCACAC
CTTTGACGCCACCTCTTCAAAGACACGCTATTAGTGCCAGCAGCAATAGT
CGACGTGACGTAATGATCAAAGGTGGAGTTAGCACTTTGCTGGGGATGCT
TGGCCTGGCAACGACAAAACCACCTCGCATTGCTTCTGCCGCAGATGCCC
CCGCCGCCCCTGCAGCCCCTCCAACCGGCCCCAAGAAATGGATGAGCGGA
AAGAGTGAGAAACCACGAGGTAGCAAGGATCGAACAGGCACCAAGAAGGA
CAGCAATTACTTAAGGTGTTTGAGTGATTGTACGACTGAATGTCGGAAGC
CGGGGCAAGGTCCGAGCAAGGACAATGCGGAGTGTTTGGAGGCTTGTCAA
GATTACTGCTGTCAGACGTACGAACAGTGCACGTATACACAAAACTACGA
AGGGTAA
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Synonyms
Publications