jgi.p|Nanoce1779_2|566998, mRNA_6238 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|566998
Unique Name	mRNA_6238
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	756
Alignment location	scaffold_15:102030..103736 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	567084
Track	FilteredModels2
ProteinId	566998

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:102030..103736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566998	gene_6238	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566998	mRNA_6238-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6238	CDS_6238	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:102030..103736+
coding sequence from alignment at scaffold_15:102030..103736+

mRNA sequence

>mRNA_6238 ID=mRNA_6238|Name=jgi.p|Nanoce1779_2|566998|organism=Nannochloropsis oceanica|type=mRNA|length=756bp
ATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCTTGTCATCATCCT
AGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGAAAGCCCACCAGA
ATGAGAAGCCTACTCGGCCCTTCAGTCGTCTGCAGTCCACCACGGGCAGC
GGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCAGGAAGGATTCAA
GGCAATTTTGGATAACTCAGAGATCCAGCACCGCGTCCTGAAGGAGCTGC
CTCTTTTGGGTGCCATCGAGGGTTTCAGCAAGATCAAGGACAACCGCCGG
TTGAGCGCGGAGGATGTAAGGAGGTTTGGGGATAAAGAGACAGTAAATAA
ATTTCGTTGCATGTTCCCTTACGTTGCTCTATACATTCATCCGCAGACCA
AGAAGAGCTTCGCTACGGGGATGGATAACCTGCTGAACCTGGCCAACGAT
GCCTTCTTCAATAAGGTAAACGACCCTGCCAAGGTTTCGGAGACGGTCGC
CAAGATGGCCACATCACCAGATCCTTCGATTCAGGCCCTTTTCCAACGGG
CGCAATCTGGCGAGAAGGAAGCCGTGGAGGCCCTACAGGACGAGTTCACG
AAGCGGCACTACACTGGCCTGGATGGAAAGGCGTTTCGGGAAATATCCAT
GGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGATGATGCACTTTA
TTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGACCGTGAGTTGAAA
AGATAG

protein sequence of jgi.p|Nanoce1779_2|566998

>mRNA_6238-protein ID=mRNA_6238-protein|Name=jgi.p|Nanoce1779_2|566998|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MHASPLRPSSCLLVIILAFALVVLVQGQEKAHQNEKPTRPFSRLQSTTGS
GSKTDSAQLPGNQEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRR
LSAEDVRRFGDKETVNKFRCMFPYVALYIHPQTKKSFATGMDNLLNLAND
AFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFT
KRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQVFKDRELK
R*

mRNA from alignment at scaffold_15:102030..103736+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6238 ID=mRNA_6238|Name=jgi.p|Nanoce1779_2|566998|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp|location=Sequence derived from alignment at scaffold_15:102030..103736+ (Nannochloropsis oceanica)
ATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCTTGTCATCATCCT
AGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGAAAGCCCACCAGA
ATGAGAAGCCTACTCGGCCCTTCAGTCGTCTGCAGTCCACCACGGGCAGC
GGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCAGGAAGGTGAGCG
TGAAGGATAGTACATTCGTAGTGGATTCGAAGCACGGAGGGTATAGATAC
ATAAAGTATGTGGATGACTTGCGGCAAGTCGCATAGGTGCACAGCCGCAC
AGCCCTCCCTTGTCCCCTTGCTGCCCTCCGGCTTATGTCGCGTCGCACAC
AAAGCAACCGTATTTCCCCGCCCCCCATTCACACCTCATCCCCTTTACGC
AAACGACAGCTGAATTTACCAAGCCCACGAACCGCGTCGGCTACCTCCTA
AACCTCACCAAGAACGGGCTCAACCCTGTGCAAGCTTTCCGCGATGCCAT
GAACACTGAGGGTACGCTTAAAAGAAGAAAGGGCGGGGAGATAGACGGGC
GAGGAAGCATGTTGTAAGCTTTATAGTTTCACAAGAGAGGGGAAGAAACA
GGAATTGAAGATGACAACAAGAGGATTTGAGTTACGCAGGCGGACCGAGG
AAGAAGACACGACACCGAGCCTCTCCTTACATTCCCTCTATCCCCTCCCT
TCCTCCCTTCCTTCCCCAATTCCCCCACCCTCCTAAGGATTCAAGGCAAT
TTTGGATAACTCAGAGATCCAGCACCGCGTCCTGAAGGAGCTGCCTCTTT
TGGGTGCCATCGAGGGTTTCAGCAAGATCAAGGACAACCGCCGGTTGAGC
GCGGAGGATGTAAGGAGGTTTGGGGATAAAGAGACAGTAAATAAATTTCG
TTGCATGTTCCCTTACGTTGCTCTATACATTCATCCGCAGACCAAGAAGA
GCTTCGCTACGGGGATGGATAACCTGCTGAACCTGGCCAACGATGCCTTC
TTCAATAAGGTAAACAGAAGATTCCCAGCCATATTCTCAAAGTATTCTCC
ATTCATTGCCTACTAAATGCCCGATTCTAATCTATTTGTCAGCACACATT
TACATTACCACTGTTTGACCACTCCCTCCTGCCCTTCCTTTCTTCTCAGG
TAAACGACCCTGCCAAGGTTTCGGAGACGGTCGCCAAGATGGCCACATCA
CCAGATCCTTCGATTCAGGTAGGAAAAGGGGAGGCCCAGAAAGAGGGTGA
GAAGGAAGGCAGTATCTCCGTCCTGCTTGGTCCAACTCTTTTTTCTTTCA
CTGACTTCTCACGACACGTTCGTTATTTCTGTCCCTCTCCCTTCCTCTTT
CTTTCACAACACACGCAGGCCCTTTTCCAACGGGCGCAATCTGGCGAGAA
GGAAGCCGTGGAGGCCCTACAGGACGAGTTCACGAAGCGGCACTACACTG
GTACGTCCACTTTCCCTGTCTCCTTTCCTTTACTGTCGAGTATGCGATAA
GTGTTGTCAAATTTGCTTACCGCCCCCTTCCCCCTCCCCTCCTCTCTCCT
CCCTTCTCTCCCCCTAGGCCTGGATGGAAAGGCGTTTCGGGAAATATCCA
TGGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGATGATGCACTTT
ATTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGACCGTGAGTTGAA
AAGATAG

Coding sequence (CDS) from alignment at scaffold_15:102030..103736+

>mRNA_6238 ID=mRNA_6238|Name=jgi.p|Nanoce1779_2|566998|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_15:102030..103736+ (Nannochloropsis oceanica)
ATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCTTGTCATCATCCT
AGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGAAAGCCCACCAGA
ATGAGAAGCCTACTCGGCCCTTCAGTCGTCTGCAGTCCACCACGGGCAGC
GGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCAGGAAGGATTCAA
GGCAATTTTGGATAACTCAGAGATCCAGCACCGCGTCCTGAAGGAGCTGC
CTCTTTTGGGTGCCATCGAGGGTTTCAGCAAGATCAAGGACAACCGCCGG
TTGAGCGCGGAGGATGTAAGGAGGTTTGGGGATAAAGAGACAGTAAATAA
ATTTCGTTGCATGTTCCCTTACGTTGCTCTATACATTCATCCGCAGACCA
AGAAGAGCTTCGCTACGGGGATGGATAACCTGCTGAACCTGGCCAACGAT
GCCTTCTTCAATAAGGTAAACGACCCTGCCAAGGTTTCGGAGACGGTCGC
CAAGATGGCCACATCACCAGATCCTTCGATTCAGGCCCTTTTCCAACGGG
CGCAATCTGGCGAGAAGGAAGCCGTGGAGGCCCTACAGGACGAGTTCACG
AAGCGGCACTACACTGGCCTGGATGGAAAGGCGTTTCGGGAAATATCCAT
GGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGATGATGCACTTTA
TTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGACCGTGAGTTGAAA
AGATAGATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCTTGTCAT
CATCCTAGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGAAAGCCC
ACCAGAATGAGAAGCCTACTCGGCCCTTCAGTCGTCTGCAGTCCACCACG
GGCAGCGGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCAGGAAGG
ATTCAAGGCAATTTTGGATAACTCAGAGATCCAGCACCGCGTCCTGAAGG
AGCTGCCTCTTTTGGGTGCCATCGAGGGTTTCAGCAAGATCAAGGACAAC
CGCCGGTTGAGCGCGGAGGATGTAAGGAGGTTTGGGGATAAAGAGACAGT
AAATAAATTTCGTTGCATGTTCCCTTACGTTGCTCTATACATTCATCCGC
AGACCAAGAAGAGCTTCGCTACGGGGATGGATAACCTGCTGAACCTGGCC
AACGATGCCTTCTTCAATAAGGTAAACGACCCTGCCAAGGTTTCGGAGAC
GGTCGCCAAGATGGCCACATCACCAGATCCTTCGATTCAGGCCCTTTTCC
AACGGGCGCAATCTGGCGAGAAGGAAGCCGTGGAGGCCCTACAGGACGAG
TTCACGAAGCGGCACTACACTGGCCTGGATGGAAAGGCGTTTCGGGAAAT
ATCCATGGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGATGATGC
ACTTTATTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGACCGTGAG
TTGAAAAGATAGATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCT
TGTCATCATCCTAGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGA
AAGCCCACCAGAATGAGAAGCCTACTCGGCCCTTCAGTCGTCTGCAGTCC
ACCACGGGCAGCGGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCA
GGAAGGATTCAAGGCAATTTTGGATAACTCAGAGATCCAGCACCGCGTCC
TGAAGGAGCTGCCTCTTTTGGGTGCCATCGAGGGTTTCAGCAAGATCAAG
GACAACCGCCGGTTGAGCGCGGAGGATGTAAGGAGGTTTGGGGATAAAGA
GACAGTAAATAAATTTCGTTGCATGTTCCCTTACGTTGCTCTATACATTC
ATCCGCAGACCAAGAAGAGCTTCGCTACGGGGATGGATAACCTGCTGAAC
CTGGCCAACGATGCCTTCTTCAATAAGGTAAACGACCCTGCCAAGGTTTC
GGAGACGGTCGCCAAGATGGCCACATCACCAGATCCTTCGATTCAGGCCC
TTTTCCAACGGGCGCAATCTGGCGAGAAGGAAGCCGTGGAGGCCCTACAG
GACGAGTTCACGAAGCGGCACTACACTGGCCTGGATGGAAAGGCGTTTCG
GGAAATATCCATGGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGA
TGATGCACTTTATTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGAC
CGTGAGTTGAAAAGATAGATGCATGCCTCTCCTTTACGACCGTCCTCCTG
TCTCCTTGTCATCATCCTAGCATTCGCCCTTGTGGTTCTTGTCCAGGGAC
AGGAGAAAGCCCACCAGAATGAGAAGCCTACTCGGCCCTTCAGTCGTCTG
CAGTCCACCACGGGCAGCGGTAGCAAAACTGACTCTGCACAGTTGCCGGG
CAATCAGGAAGGATTCAAGGCAATTTTGGATAACTCAGAGATCCAGCACC
GCGTCCTGAAGGAGCTGCCTCTTTTGGGTGCCATCGAGGGTTTCAGCAAG
ATCAAGGACAACCGCCGGTTGAGCGCGGAGGATGTAAGGAGGTTTGGGGA
TAAAGAGACAGTAAATAAATTTCGTTGCATGTTCCCTTACGTTGCTCTAT
ACATTCATCCGCAGACCAAGAAGAGCTTCGCTACGGGGATGGATAACCTG
CTGAACCTGGCCAACGATGCCTTCTTCAATAAGGTAAACGACCCTGCCAA
GGTTTCGGAGACGGTCGCCAAGATGGCCACATCACCAGATCCTTCGATTC
AGGCCCTTTTCCAACGGGCGCAATCTGGCGAGAAGGAAGCCGTGGAGGCC
CTACAGGACGAGTTCACGAAGCGGCACTACACTGGCCTGGATGGAAAGGC
GTTTCGGGAAATATCCATGGAGCAGACTGCGAGCAAGATGGAGCAGTTGC
CGGAGATGATGCACTTTATTGAAAAGGACCCCAGCCTGGCACAGGTTTTC
AAAGACCGTGAGTTGAAAAGATAGATGCATGCCTCTCCTTTACGACCGTC
CTCCTGTCTCCTTGTCATCATCCTAGCATTCGCCCTTGTGGTTCTTGTCC
AGGGACAGGAGAAAGCCCACCAGAATGAGAAGCCTACTCGGCCCTTCAGT
CGTCTGCAGTCCACCACGGGCAGCGGTAGCAAAACTGACTCTGCACAGTT
GCCGGGCAATCAGGAAGGATTCAAGGCAATTTTGGATAACTCAGAGATCC
AGCACCGCGTCCTGAAGGAGCTGCCTCTTTTGGGTGCCATCGAGGGTTTC
AGCAAGATCAAGGACAACCGCCGGTTGAGCGCGGAGGATGTAAGGAGGTT
TGGGGATAAAGAGACAGTAAATAAATTTCGTTGCATGTTCCCTTACGTTG
CTCTATACATTCATCCGCAGACCAAGAAGAGCTTCGCTACGGGGATGGAT
AACCTGCTGAACCTGGCCAACGATGCCTTCTTCAATAAGGTAAACGACCC
TGCCAAGGTTTCGGAGACGGTCGCCAAGATGGCCACATCACCAGATCCTT
CGATTCAGGCCCTTTTCCAACGGGCGCAATCTGGCGAGAAGGAAGCCGTG
GAGGCCCTACAGGACGAGTTCACGAAGCGGCACTACACTGGCCTGGATGG
AAAGGCGTTTCGGGAAATATCCATGGAGCAGACTGCGAGCAAGATGGAGC
AGTTGCCGGAGATGATGCACTTTATTGAAAAGGACCCCAGCCTGGCACAG
GTTTTCAAAGACCGTGAGTTGAAAAGATAG

Synonyms

Publications