jgi.p|Nanoce1779_2|649709, mRNA_6236 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|649709
Unique NamemRNA_6236
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length489
Alignment locationscaffold_15:95556..96044 +

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Properties
Property NameValue
TranscriptId649795
TrackFilteredModels2
ProteinId649709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:95556..96044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649709gene_6236Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649709mRNA_6236-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6236CDS_6236Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6236 ID=mRNA_6236|Name=jgi.p|Nanoce1779_2|649709|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAGCGAACATGATACAAAAGATGGCTCG
ATTCTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
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protein sequence of jgi.p|Nanoce1779_2|649709

>mRNA_6236-protein ID=mRNA_6236-protein|Name=jgi.p|Nanoce1779_2|649709|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAMPNLTLQGKKVQLKEQREEEIIRDNIKLLDKIWTISQAGSEHDTKDGS
ILHSSLITSMTCAPVSFALLHRSKHERIRRQADLKVVRENKALLARLERA
RPFVDVVKMEEEYMHRTAQRAPHSRKSMRAKVQAQLEDEEKEEGRKGVEK
RMAVEEATAVVR*
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mRNA from alignment at scaffold_15:95556..96044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6236 ID=mRNA_6236|Name=jgi.p|Nanoce1779_2|649709|organism=Nannochloropsis oceanica|type=mRNA|length=489bp|location=Sequence derived from alignment at scaffold_15:95556..96044+ (Nannochloropsis oceanica)
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAGCGAACATGATACAAAAGATGGCTCG
ATTCTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
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Coding sequence (CDS) from alignment at scaffold_15:95556..96044+

>mRNA_6236 ID=mRNA_6236|Name=jgi.p|Nanoce1779_2|649709|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_15:95556..96044+ (Nannochloropsis oceanica)
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAGCGAACATGATACAAAAGATGGCTCG
ATTCTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
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Synonyms
Publications