jgi.p|Nanoce1779_2|594234, mRNA_6228 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594234
Unique Name	mRNA_6228
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1026
Alignment location	scaffold_15:68219..69653 +

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Properties


Property Name	Value
TranscriptId	594320
Track	FilteredModels2
ProteinId	594234

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:68219..69653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594234	gene_6228	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594234	mRNA_6228-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6228	CDS_6228	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:68219..69653+
coding sequence from alignment at scaffold_15:68219..69653+

mRNA sequence

>mRNA_6228 ID=mRNA_6228|Name=jgi.p|Nanoce1779_2|594234|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
CAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGCCCTCGCATGCTT
TCCGGCGACAGCACCAGCACCAGCACCAGCACCAGCTACAGCAGCAGGAG
CAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCATTTACCTCCAGC
ATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGTGCTACTGCGAGG
AAAATGTTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTTCATCA
AGTTCTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAACAAGAT
CAAAACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAA
AGAATGTAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGACACAAG
GAACATTTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAGAGATC
ACCGGTCTTGTGGGACTATCACGTTGTCGCCCTCTTGGAGACCGGCGATA
GCGCTGCCTTCATCTATGACCTTGACACTCGCCTAGAACCTTTCCCTTGT
CCGGCGTCTGAGTATGTTGCGCGGGCTTTTAGGCCTGACATACCTATGAA
GGAGGAATACCGGCAACGTTTCCGACTAGTGCCCTTCGTGCCCATCTTCC
GCGATAGTTTCGCCTGCGACCGCTCCCACATGCGGAGACCCGATGGCTCT
TGGAATGCACCACCGCCGGCTTATCCACCCATAAGGTACGTTAAAAGTGG
TGTTGAGGAGGGCGAAATTAAGGGGGGAGAAAGAGTGGGATTGCAAGGAA
AAGGGAGAAAGAAAAAGAAATAAAGGTACGCATATTCGTTCATAACTCTA
TCGCGTCATCGACGAGAGGTCTTTTCCTCACGCCAAGCCTCGCTTATTCT
TCCTCTTCTCCCTTCCTCCATCTTACGTGAATTACAGAGGATCTAGGCGG
CCTCCCCAATGACCCTCCCATTATTTTGGAACGTAGACGATCAATGGGAA
GAAAGAATAGGGGGAGGGAGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|594234

>mRNA_6228-protein ID=mRNA_6228-protein|Name=jgi.p|Nanoce1779_2|594234|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MPSHAFRRQHQHQHQHQLQQQEQRESPQPPQEASHLPPALSLPRAAFVYT
RCYCEENVYLLLAKLQTLLISSSSGSPGQLSALFISNKIKTCPVWGQLAA
GEDGSKNVERKDEREYKETGHKEHFDGDDNDDNEERERSPVLWDYHVVAL
LETGDSAAFIYDLDTRLEPFPCPASEYVARAFRPDIPMKEEYRQRFRLVP
FVPIFRDSFACDRSHMRRPDGSWNAPPPAYPPIRYVKSGVEEGEIKGGER
VGLQGKGRKKKK*

mRNA from alignment at scaffold_15:68219..69653+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6228 ID=mRNA_6228|Name=jgi.p|Nanoce1779_2|594234|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at scaffold_15:68219..69653+ (Nannochloropsis oceanica)
CAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGCCCTCGCATGCTT
TCCGGCGACAGCACCAGCACCAGCACCAGCACCAGCTACAGCAGCAGGAG
CAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCATTTACCTCCAGC
ATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGTGCTACTGCGAGG
TGAGATAGAGTGAGAAGATTGTAATCCGACAGAAGCAGGACAACGACAAC
AGGCGAGACCCATGGCACAGTATATCAGCACAAAGACGCCTGTACTCTCA
TGCCCATCCCCGCCGTCCATCCCTTTCTTTCAGGAAAATGTTTATCTACT
TCTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTTCTGGTTCACCAG
GCCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAAACTTGTCCAGTG
TGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAATGTAGAGAGGAA
GGATGAACGCGAGTACAAGGAGACGGGACACAAGGAACATTTCGATGGTG
ACGATAACGACGACAACGAGGAGAGGGAGAGATCACCGGTCTTGTGGGAC
TATCACGGTGAGCTCGTGATGCAATGGTCGAGGAAAATGAAGAAAGGGGC
ACAACAAGCTACATTCTTTGCAAACTACATCGTCGAGAATTTTTCGAGGC
ATCTAGAGAATTCTGACCGTCTCCCTCCCTGCTTCCCTCCCTCCTCTAGT
TGTCGCCCTCTTGGAGACCGGCGATAGCGCTGCCTTCATCTATGACCTTG
ACACTCGCCTAGAACCTTTCCCTTGTCCGGCGTCTGAGTATGTTGCGCGG
GCTTTTAGGCCTGACATACCTATGAAGGAGGAATACCGGCAGTGAGTGGG
CACGTAGGGAGGGAGGAAGGGCGGAAGGAATGGCGGGAGAGAGTTTCCTA
TTGTGGTGTATTTCACACATTAACGCCTGGACTCATTTCTACTTTCTTTC
CTCCTCCTGCATCTTTATCTGAAGACGTTTCCGACTAGTGCCCTTCGTGC
CCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCACATGCGGAGACCC
GATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACCCATAAGGTACGT
TAAAAGTGGTGTTGAGGAGGGCGAAATTAAGGGGGGAGAAAGAGTGGGAT
TGCAAGGAAAAGGGAGAAAGAAAAAGAAATAAAGGTACGCATATTCGTTC
ATAACTCTATCGCGTCATCGACGAGAGGTCTTTTCCTCACGCCAAGCCTC
GCTTATTCTTCCTCTTCTCCCTTCCTCCATCTTACGTGAATTACAGAGGA
TCTAGGCGGCCTCCCCAATGACCCTCCCATTATTTTGGAACGTAGACGAT
CAATGGGAAGAAAGAATAGGGGGAGGGAGGGGGGG

Coding sequence (CDS) from alignment at scaffold_15:68219..69653+

>mRNA_6228 ID=mRNA_6228|Name=jgi.p|Nanoce1779_2|594234|organism=Nannochloropsis oceanica|type=CDS|length=3156bp|location=Sequence derived from alignment at scaffold_15:68219..69653+ (Nannochloropsis oceanica)
ATGCCCTCGCATGCTTTCCGGCGACAGCACCAGCACCAGCACCAGCACCA
GCTACAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCAT
CCCATTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACG
CGGTGCTACTGCGAGGAAAATGTTTATCTACTTCTGGCCAAGCTCCAAAC
CCTTCTTATTTCATCAAGTTCTGGTTCACCAGGCCAGCTCTCGGCCCTCT
TCATCTCCAACAAGATCAAAACTTGTCCAGTGTGGGGTCAACTGGCAGCA
GGAGAAGACGGCTCAAAGAATGTAGAGAGGAAGGATGAACGCGAGTACAA
GGAGACGGGACACAAGGAACATTTCGATGGTGACGATAACGACGACAACG
AGGAGAGGGAGAGATCACCGGTCTTGTGGGACTATCACGTTGTCGCCCTC
TTGGAGACCGGCGATAGCGCTGCCTTCATCTATGACCTTGACACTCGCCT
AGAACCTTTCCCTTGTCCGGCGTCTGAGTATGTTGCGCGGGCTTTTAGGC
CTGACATACCTATGAAGGAGGAATACCGGCAACGTTTCCGACTAGTGCCC
TTCGTGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCACATGCG
GAGACCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACCCATAA
GGTACGTTAAAAGTGGTGTTGAGGAGGGCGAAATTAAGGGGGGAGAAAGA
GTGGGATTGCAAGGAAAAGGGAGAAAGAAAAAGAAATAAATGCCCTCGCA
TGCTTTCCGGCGACAGCACCAGCACCAGCACCAGCACCAGCTACAGCAGC
AGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCATTTACCT
CCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGTGCTACTG
CGAGGAAAATGTTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTT
CATCAAGTTCTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAAC
AAGATCAAAACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGG
CTCAAAGAATGTAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGAC
ACAAGGAACATTTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAG
AGATCACCGGTCTTGTGGGACTATCACGTTGTCGCCCTCTTGGAGACCGG
CGATAGCGCTGCCTTCATCTATGACCTTGACACTCGCCTAGAACCTTTCC
CTTGTCCGGCGTCTGAGTATGTTGCGCGGGCTTTTAGGCCTGACATACCT
ATGAAGGAGGAATACCGGCAACGTTTCCGACTAGTGCCCTTCGTGCCCAT
CTTCCGCGATAGTTTCGCCTGCGACCGCTCCCACATGCGGAGACCCGATG
GCTCTTGGAATGCACCACCGCCGGCTTATCCACCCATAAGGTACGTTAAA
AGTGGTGTTGAGGAGGGCGAAATTAAGGGGGGAGAAAGAGTGGGATTGCA
AGGAAAAGGGAGAAAGAAAAAGAAATAAATGCCCTCGCATGCTTTCCGGC
GACAGCACCAGCACCAGCACCAGCACCAGCTACAGCAGCAGGAGCAACGA
GAAAGTCCCCAGCCTCCGCAGGAGGCATCCCATTTACCTCCAGCATTGTC
CTTACCTCGCGCTGCCTTCGTCTACACGCGGTGCTACTGCGAGGAAAATG
TTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTTCT
GGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAAAC
TTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAATG
TAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGACACAAGGAACAT
TTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAGAGATCACCGGT
CTTGTGGGACTATCACGTTGTCGCCCTCTTGGAGACCGGCGATAGCGCTG
CCTTCATCTATGACCTTGACACTCGCCTAGAACCTTTCCCTTGTCCGGCG
TCTGAGTATGTTGCGCGGGCTTTTAGGCCTGACATACCTATGAAGGAGGA
ATACCGGCAACGTTTCCGACTAGTGCCCTTCGTGCCCATCTTCCGCGATA
GTTTCGCCTGCGACCGCTCCCACATGCGGAGACCCGATGGCTCTTGGAAT
GCACCACCGCCGGCTTATCCACCCATAAGGTACGTTAAAAGTGGTGTTGA
GGAGGGCGAAATTAAGGGGGGAGAAAGAGTGGGATTGCAAGGAAAAGGGA
GAAAGAAAAAGAAATAAATGCCCTCGCATGCTTTCCGGCGACAGCACCAG
CACCAGCACCAGCACCAGCTACAGCAGCAGGAGCAACGAGAAAGTCCCCA
GCCTCCGCAGGAGGCATCCCATTTACCTCCAGCATTGTCCTTACCTCGCG
CTGCCTTCGTCTACACGCGGTGCTACTGCGAGGAAAATGTTTATCTACTT
CTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTTCTGGTTCACCAGG
CCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAAACTTGTCCAGTGT
GGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAATGTAGAGAGGAAG
GATGAACGCGAGTACAAGGAGACGGGACACAAGGAACATTTCGATGGTGA
CGATAACGACGACAACGAGGAGAGGGAGAGATCACCGGTCTTGTGGGACT
ATCACGTTGTCGCCCTCTTGGAGACCGGCGATAGCGCTGCCTTCATCTAT
GACCTTGACACTCGCCTAGAACCTTTCCCTTGTCCGGCGTCTGAGTATGT
TGCGCGGGCTTTTAGGCCTGACATACCTATGAAGGAGGAATACCGGCAAC
GTTTCCGACTAGTGCCCTTCGTGCCCATCTTCCGCGATAGTTTCGCCTGC
GACCGCTCCCACATGCGGAGACCCGATGGCTCTTGGAATGCACCACCGCC
GGCTTATCCACCCATAAGGTACGTTAAAAGTGGTGTTGAGGAGGGCGAAA
TTAAGGGGGGAGAAAGAGTGGGATTGCAAGGAAAAGGGAGAAAGAAAAAG
AAATAA

Synonyms

Publications