jgi.p|Nanoce1779_2|671845, mRNA_6227 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671845
Unique NamemRNA_6227
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1169
Alignment locationscaffold_15:66444..67898 -

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Properties
Property NameValue
TranscriptId671931
TrackFilteredModels2
ProteinId671845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:66444..67898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671845gene_6227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671845mRNA_6227-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6227CDS_6227Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6227 ID=mRNA_6227|Name=jgi.p|Nanoce1779_2|671845|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
CAGATAAAGCTACATTCAAAGCCCTCCCTCCGCTCCGAGCCGGGCTTGAA
TTCGCTCGTTCACCCAAGTCAAGGACTTCGCCACCTCGGGTCTCCTTCCT
CGTACGATCCGACGTCACGCGGACGCCGGCCACGATTTGGATGGAGATTC
GCTTGCAACTCCTCATTTTCCTGACCCTGACGGTTCTGATTGATGCTTTT
TATTCCCTGCCGCAACATTCTCTTTCCATCTCGAGGTTTAAATGCCAAAA
CCCCACTACTGCTGTTCTTTCGGCCGTCCACCAGTACTTTCCATCCTTTT
TCGTATCGCACTCCACCCGGAACTCCTTGCCCTCCTCCTCCTCCTCCTCT
GCTGCAAAAGATGGTAATTCACCCCGAAGCTCCATGGCTAGACGTTTTCG
CGACAACAGCAGTCGGAAACGAATTCCTTGTCCTCTTCCTCCATTACCTC
AGCCTCCTTGCCAGCTCCGCGTCGTCGTCACAGCCTTTGGGCCATTCCAG
GACGTGGCATCTAACCCCTCCGAGACCCTAGTCCGGCGGCTGGGCGACCA
GATCCAGAAGACGGAAGATATCATTAAAATCTCCACCCACATTCTCGAAA
CATCCGCCATCGGCTCCCTAACCGAGCTGCAGCAAATTCACACCACCTTG
AGAACCCAAGGCCTCCAGCAAGAAGACAACCTTTTGCTCCTGCACCTAGG
CGTACGCAACGATATCGAAGGCTTTCGTTTAGAAAGCGTGGGGTACAATG
AAGCGTCGTTTGATTTCCCGGATGAACGGGCTTTCCAGCCTTGGAAAGCC
GCAGTCTCCCACGCCAACCCTGACACGTCCTTCTCCCTTTTTTCGACCTT
GCCGCTTCATACAATAGCTCGAGCCTTACACGCTGAGAGTCCTTCAGGAC
CTGGATATACCCGCGAAGAGGTTTCGATTTCCTCAAATCCCGGCCGGTTT
GTGTGTAATTACCTTTACTTCAATTCTTTGGAGATGTGTCGGGTCCGTGG
ACATGCCCACAGCGCAGCCTTGTTTGTGCACTTGCCGTCTTTTAGCCGCA
TCGCCGAAGACGCTCAGTTTAAGTTTTTGGAACGGGTTTTGGAGATGGCA
GTTTGCCATTTTCCTCAGACGGTGCAGGAGGTGGTGGCTGTGGGAGGGGA
AGGAGGGCGTGGTGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|671845

>mRNA_6227-protein ID=mRNA_6227-protein|Name=jgi.p|Nanoce1779_2|671845|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MEIRLQLLIFLTLTVLIDAFYSLPQHSLSISRFKCQNPTTAVLSAVHQYF
PSFFVSHSTRNSLPSSSSSSAAKDGNSPRSSMARRFRDNSSRKRIPCPLP
PLPQPPCQLRVVVTAFGPFQDVASNPSETLVRRLGDQIQKTEDIIKISTH
ILETSAIGSLTELQQIHTTLRTQGLQQEDNLLLLHLGVRNDIEGFRLESV
GYNEASFDFPDERAFQPWKAAVSHANPDTSFSLFSTLPLHTIARALHAES
PSGPGYTREEVSISSNPGRFVCNYLYFNSLEMCRVRGHAHSAALFVHLPS
FSRIAEDAQFKFLERVLEMAVCHFPQTVQEVVAVGGEGGRGG*
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mRNA from alignment at scaffold_15:66444..67898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6227 ID=mRNA_6227|Name=jgi.p|Nanoce1779_2|671845|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp|location=Sequence derived from alignment at scaffold_15:66444..67898- (Nannochloropsis oceanica)
CAGATAAAGCTACATTCAAAGCCCTCCCTCCGCTCCGAGCCGGGCTTGAA
TTCGCTCGTTCACCCAAGTCAAGGACTTCGCCACCTCGGGTCTCCTTCCT
CGTACGATCCGACGTCACGCGGACGCCGGCCACGATTTGGATGGAGATTC
GCTTGCAACTCCTCATTTTCCTGACCCTGACGGTTCTGATTGATGCTTTT
TATTCCCTGCCGCAACATTCTCTTTCCATCTCGAGGTAAGCCCTCTCAGG
CAGTACCGACAACGCAAAGGACTACGTAGAAAGGTTGCGTTGGGCACTCA
CATGCAGAACCATTTGCGTATTCTCTCAGGTTTAAATGCCAAAACCCCAC
TACTGCTGTTCTTTCGGCCGTCCACCAGTACTTTCCATCCTTTTTCGTAT
CGCACTCCACCCGGAACTCCTTGCCCTCCTCCTCCTCCTCCTCTGCTGCA
AAAGATGGTAATTCACCCCGAAGCTCCATGGCTAGACGTTTTCGCGACAA
CAGCAGTCGGAAACGAATTCCTTGTCCTCTTCCTCCATTACCTCAGCCTC
CTTGCCAGCTCCGCGTCGTCGTCACAGCCTTTGGGCCATTCCAGGACGTG
GCATCTAACCCCTCCGAGACCCTAGTCCGGCGGCTGGGCGACCAGGTGAA
ATTTCCCCCCCGCTCGAATATCCGTAAACTGTCTCTTTCCATTGACATCC
TCTTTCCAAGCTGCCTCTCACGGATTTGTCACTCCTTTCAACTGACTAAC
TGTCTTTTATCTTTGGTTATCCTTTGCGCTCTCCCCTTCTTCTCTAACTT
CCTCCTCTTTTTCCTATCAATCACACGTATCCATAAGATCCAGAAGACGG
AAGATATCATTAAAATCTCCACCCACATTCTCGAAACATCCGCCATCGGC
TCCCTAACCGAGCTGCAGCAAATTCACACCACCTTGAGAACCCAAGGCCT
CCAGCAAGAAGACAACCTTTTGCTCCTGCACCTAGGCGTACGCAACGATA
TCGAAGGCTTTCGTTTAGAAAGCGTGGGGTACAATGAAGCGTCGTTTGAT
TTCCCGGATGAACGGGCTTTCCAGCCTTGGAAAGCCGCAGTCTCCCACGC
CAACCCTGACACGTCCTTCTCCCTTTTTTCGACCTTGCCGCTTCATACAA
TAGCTCGAGCCTTACACGCTGAGAGTCCTTCAGGACCTGGATATACCCGC
GAAGAGGTTTCGATTTCCTCAAATCCCGGCCGGTTTGTGTGTAATTACCT
TTACTTCAATTCTTTGGAGATGTGTCGGGTCCGTGGACATGCCCACAGCG
CAGCCTTGTTTGTGCACTTGCCGTCTTTTAGCCGCATCGCCGAAGACGCT
CAGTTTAAGTTTTTGGAACGGGTTTTGGAGATGGCAGTTTGCCATTTTCC
TCAGACGGTGCAGGAGGTGGTGGCTGTGGGAGGGGAAGGAGGGCGTGGTG
GGTAG
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Coding sequence (CDS) from alignment at scaffold_15:66444..67898-

>mRNA_6227 ID=mRNA_6227|Name=jgi.p|Nanoce1779_2|671845|organism=Nannochloropsis oceanica|type=CDS|length=3087bp|location=Sequence derived from alignment at scaffold_15:66444..67898- (Nannochloropsis oceanica)
ATCCAGAAGACGGAAGATATCATTAAAATCTCCACCCACATTCTCGAAAC
ATCCGCCATCGGCTCCCTAACCGAGCTGCAGCAAATTCACACCACCTTGA
GAACCCAAGGCCTCCAGCAAGAAGACAACCTTTTGCTCCTGCACCTAGGC
GTACGCAACGATATCGAAGGCTTTCGTTTAGAAAGCGTGGGGTACAATGA
AGCGTCGTTTGATTTCCCGGATGAACGGGCTTTCCAGCCTTGGAAAGCCG
CAGTCTCCCACGCCAACCCTGACACGTCCTTCTCCCTTTTTTCGACCTTG
CCGCTTCATACAATAGCTCGAGCCTTACACGCTGAGAGTCCTTCAGGACC
TGGATATACCCGCGAAGAGGTTTCGATTTCCTCAAATCCCGGCCGGTTTG
TGTGTAATTACCTTTACTTCAATTCTTTGGAGATGTGTCGGGTCCGTGGA
CATGCCCACAGCGCAGCCTTGTTTGTGCACTTGCCGTCTTTTAGCCGCAT
CGCCGAAGACGCTCAGTTTAAGTTTTTGGAACGGGTTTTGGAGATGGCAG
TTTGCCATTTTCCTCAGACGGTGCAGGAGGTGGTGGCTGTGGGAGGGGAA
GGAGGGCGTGGTGGGTAGGTTTAAATGCCAAAACCCCACTACTGCTGTTC
TTTCGGCCGTCCACCAGTACTTTCCATCCTTTTTCGTATCGCACTCCACC
CGGAACTCCTTGCCCTCCTCCTCCTCCTCCTCTGCTGCAAAAGATGGTAA
TTCACCCCGAAGCTCCATGGCTAGACGTTTTCGCGACAACAGCAGTCGGA
AACGAATTCCTTGTCCTCTTCCTCCATTACCTCAGCCTCCTTGCCAGCTC
CGCGTCGTCGTCACAGCCTTTGGGCCATTCCAGGACGTGGCATCTAACCC
CTCCGAGACCCTAGTCCGGCGGCTGGGCGACCAGATGGAGATTCGCTTGC
AACTCCTCATTTTCCTGACCCTGACGGTTCTGATTGATGCTTTTTATTCC
CTGCCGCAACATTCTCTTTCCATCTCGAGATCCAGAAGACGGAAGATATC
ATTAAAATCTCCACCCACATTCTCGAAACATCCGCCATCGGCTCCCTAAC
CGAGCTGCAGCAAATTCACACCACCTTGAGAACCCAAGGCCTCCAGCAAG
AAGACAACCTTTTGCTCCTGCACCTAGGCGTACGCAACGATATCGAAGGC
TTTCGTTTAGAAAGCGTGGGGTACAATGAAGCGTCGTTTGATTTCCCGGA
TGAACGGGCTTTCCAGCCTTGGAAAGCCGCAGTCTCCCACGCCAACCCTG
ACACGTCCTTCTCCCTTTTTTCGACCTTGCCGCTTCATACAATAGCTCGA
GCCTTACACGCTGAGAGTCCTTCAGGACCTGGATATACCCGCGAAGAGGT
TTCGATTTCCTCAAATCCCGGCCGGTTTGTGTGTAATTACCTTTACTTCA
ATTCTTTGGAGATGTGTCGGGTCCGTGGACATGCCCACAGCGCAGCCTTG
TTTGTGCACTTGCCGTCTTTTAGCCGCATCGCCGAAGACGCTCAGTTTAA
GTTTTTGGAACGGGTTTTGGAGATGGCAGTTTGCCATTTTCCTCAGACGG
TGCAGGAGGTGGTGGCTGTGGGAGGGGAAGGAGGGCGTGGTGGGTAGGTT
TAAATGCCAAAACCCCACTACTGCTGTTCTTTCGGCCGTCCACCAGTACT
TTCCATCCTTTTTCGTATCGCACTCCACCCGGAACTCCTTGCCCTCCTCC
TCCTCCTCCTCTGCTGCAAAAGATGGTAATTCACCCCGAAGCTCCATGGC
TAGACGTTTTCGCGACAACAGCAGTCGGAAACGAATTCCTTGTCCTCTTC
CTCCATTACCTCAGCCTCCTTGCCAGCTCCGCGTCGTCGTCACAGCCTTT
GGGCCATTCCAGGACGTGGCATCTAACCCCTCCGAGACCCTAGTCCGGCG
GCTGGGCGACCAGATGGAGATTCGCTTGCAACTCCTCATTTTCCTGACCC
TGACGGTTCTGATTGATGCTTTTTATTCCCTGCCGCAACATTCTCTTTCC
ATCTCGAGATCCAGAAGACGGAAGATATCATTAAAATCTCCACCCACATT
CTCGAAACATCCGCCATCGGCTCCCTAACCGAGCTGCAGCAAATTCACAC
CACCTTGAGAACCCAAGGCCTCCAGCAAGAAGACAACCTTTTGCTCCTGC
ACCTAGGCGTACGCAACGATATCGAAGGCTTTCGTTTAGAAAGCGTGGGG
TACAATGAAGCGTCGTTTGATTTCCCGGATGAACGGGCTTTCCAGCCTTG
GAAAGCCGCAGTCTCCCACGCCAACCCTGACACGTCCTTCTCCCTTTTTT
CGACCTTGCCGCTTCATACAATAGCTCGAGCCTTACACGCTGAGAGTCCT
TCAGGACCTGGATATACCCGCGAAGAGGTTTCGATTTCCTCAAATCCCGG
CCGGTTTGTGTGTAATTACCTTTACTTCAATTCTTTGGAGATGTGTCGGG
TCCGTGGACATGCCCACAGCGCAGCCTTGTTTGTGCACTTGCCGTCTTTT
AGCCGCATCGCCGAAGACGCTCAGTTTAAGTTTTTGGAACGGGTTTTGGA
GATGGCAGTTTGCCATTTTCCTCAGACGGTGCAGGAGGTGGTGGCTGTGG
GAGGGGAAGGAGGGCGTGGTGGGTAGGTTTAAATGCCAAAACCCCACTAC
TGCTGTTCTTTCGGCCGTCCACCAGTACTTTCCATCCTTTTTCGTATCGC
ACTCCACCCGGAACTCCTTGCCCTCCTCCTCCTCCTCCTCTGCTGCAAAA
GATGGTAATTCACCCCGAAGCTCCATGGCTAGACGTTTTCGCGACAACAG
CAGTCGGAAACGAATTCCTTGTCCTCTTCCTCCATTACCTCAGCCTCCTT
GCCAGCTCCGCGTCGTCGTCACAGCCTTTGGGCCATTCCAGGACGTGGCA
TCTAACCCCTCCGAGACCCTAGTCCGGCGGCTGGGCGACCAGATGGAGAT
TCGCTTGCAACTCCTCATTTTCCTGACCCTGACGGTTCTGATTGATGCTT
TTTATTCCCTGCCGCAACATTCTCTTTCCATCTCGAG
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Synonyms
Publications