jgi.p|Nanoce1779_2|594203, mRNA_6223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594203
Unique NamemRNA_6223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1202
Alignment locationscaffold_15:48965..50725 +

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Properties
Property NameValue
TranscriptId594289
TrackFilteredModels2
ProteinId594203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:48965..50725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594203gene_6223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594203mRNA_6223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6223CDS_6223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6223 ID=mRNA_6223|Name=jgi.p|Nanoce1779_2|594203|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
CACGAAATACCCAAAAGCACTCGTTCATCGGAATGGAAAGCCGGTCACCT
GGTTGATGCGCGAACCGGAACGGCTCTACCCTTCCTGAAGGCGTGGGGGA
CACACACACAAGCAATCAACGTGACGCAAGGACGGTGTTGAATATGATGC
AACCTATATGTAAGACGTCGATGGGAAACGTGCCAGATAATTTTGATAGC
TAGATTGGGAATTTTTTAATGCATCATGCTGCCATGCGAAGCAATGAATC
AATCTGTCAACGGCCTGAACGAGTGCATCAACTCACCCCCCCAAATCCCG
AAACGAGATACGACGGGGTGCATATGCTTGCTTGCCCTTTGTTGACTACC
ACACTTGAGCGTGAAAGTCACGTACATCGTACAATGTCCGATTCATGGAA
AATTTTTGCCACACCGTTCATAAAAACTCCACGACTGGCTTCTATCAGCA
GCGCTGCTGGGTGCTTGTTGTCACAGCGGGATCGCAGCCACTGCCCTCGA
CGCCATCTTCTGCATGATCTGAGATTGTCATTCAAGAAAGATCGTAGGAT
CGCGTCACATTTGCATATGAAATACACGCGAAACGATTCTCCGCCTGTAT
ACCCCTTCCACTGTACCACACAGCCCCTCTCTCCTGGCTCTGCCGACGCC
TACCAGCACGAGCAACATGGCGGACACTGCCAGCCCCGTTCCCTTTAAGC
TCCTTTTTGTGTGCGTGGAAAATTCGAATCGCAGTCAGATGAGCCAAGCT
TTTGCCAAGATTCTGGGCGGGGATAAGGTGGAGTCATACAGCGCAGGTAG
CAAGCCCAGTGGGATTGTCAACCCCAAGGCTATTGCGGCTATGCGGGCGA
TCGGGTACGACCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAG
AGCTTTGCCCCCTTTGACGCAGTGGTGACCATGGGCTGTGGCGATGCCTG
CCCTTGGATGCCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCCAA
AACACATGGAGCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAGGC
CTGGTCACTGATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGC
GGCGAGGGAGGCCAAGGAGTAGGAAAAACAGAAGGGATAGAATGGGGAGG
GGGGGAAAGAGCATGGAATGGAGGGGGAGCAAGAGGAAGGAGAAGTGGTG
GA
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protein sequence of jgi.p|Nanoce1779_2|594203

>mRNA_6223-protein ID=mRNA_6223-protein|Name=jgi.p|Nanoce1779_2|594203|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADTASPVPFKLLFVCVENSNRSQMSQAFAKILGGDKVESYSAGSKPSGI
VNPKAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPA
KRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELEAERAGGAAREAK
E*
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mRNA from alignment at scaffold_15:48965..50725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6223 ID=mRNA_6223|Name=jgi.p|Nanoce1779_2|594203|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_15:48965..50725+ (Nannochloropsis oceanica)
CACGAAATACCCAAAAGCACTCGTTCATCGGAATGGAAAGCCGGTCACCT
GGTTGATGCGCGAACCGGAACGGCTCTACCCTTCCTGAAGGCGTGGGGGA
CACACACACAAGCAATCAACGTGACGCAAGGACGGTGTTGAATATGATGC
AACCTATATGTAAGACGTCGATGGGAAACGTGCCAGATAATTTTGATAGC
TAGATTGGGAATTTTTTAATGCATCATGCTGCCATGCGAAGCAATGAATC
AATCTGTCAACGGCCTGAACGAGTGCATCAACTCACCCCCCCAAATCCCG
AAACGAGATACGACGGGGTGCATATGCTTGCTTGCCCTTTGTTGACTACC
ACACTTGAGCGTGAAAGTCACGTACATCGTACAATGTCCGATTCATGGAA
AATTTTTGCCACACCGTTCATAAAAACTCCACGACTGGCTTCTATCAGCA
GCGCTGCTGGGTGCTTGTTGTCACAGCGGGATCGCAGCCACTGCCCTCGA
CGCCATCTTCTGCATGATCTGAGATTGTCATTCAAGAAAGATCGTAGGAT
CGCGTCACATTTGCATATGAAATACACGCGAAACGATTCTCCGCCTGTAT
ACCCCTTCCACTGTACCACACAGCCCCTCTCTCCTGGCTCTGCCGACGCC
TACCAGCACGAGCAACATGGCGGACACTGCCAGCCCCGTTCCCTTTAAGC
TCCTTTTTGTGTGCGTGGAAAATTCGAATCGCAGTCAGATGAGCCAAGCT
TTTGCCAAGATTCTGGGCGGGGATAAGGTGGAGTCATACAGCGCAGGTAA
TTCTTTTTCTGTAGTTTCCTACAATCCTAAAATTATCGCGTGCAACCTAT
CCGCAGAAGCCTTCCAAAAATAGATTTTTGCATATTCTCCCCCTATTTTG
GCCGAGTTTTAAATGGCTTTGGCAGGTTTTTCACGCATCCTTGTCTCCTC
GCACAGGTAGCAAGCCCAGTGGGATTGTCAACCCCAAGGTACGAAACTAG
GAAGAGAGAATGAATGAGGAAGGGCAGGAGGCAAGGACGTTTAGGTCAAA
GGAGAAATAGATTCCTCTATCATCCAATTGCTGTCCATGAATATTTATCC
GGAGAAGAAACAACAACACACTTTCAACCTTTTCTTGTCTCCCAGGCTAT
TGCGGCTATGCGGGCGATCGGGTACGACCTGTCAGCGCACGACTCCAAGA
GCCTGGAGGAAGTCAAGAGCTTTGCCCCCTTTGACGCAGTGGTGACCATG
GGCTGTGGCGATGCCTGCCCTTGGATGCCGGCGAAGCGATTCGTGAACTG
GACGATCACTGATCCAAAAGTACGCGGGGGAAAGAGGGGAGAGGGAAAGA
GGGAGGGAGGGAGGGAAGGAGCGAGCGAGGGAGCGAGGAAAGGGGTAAGA
CAGGCTGGGGTTGAGATATAATTTTTAAATATGAAGCATACTTGCACTTT
TTGCATTGTCATGTTGTAATTGAATCACGGTAGCACACCCTCTGTGACTT
TTTTCCCTTTAATCACTAGCTCACTTCCTTCCTTCCTCCCTTCCTTCCCC
CACCTCACCAGCACATGGAGCCGGAGGAGTTCAACAAGATCCGGGACTAC
ATCAAAGGCCTGGTCACTGATCTGTTGGCCGAGCTAGAGGCAGAACGTGC
GGGCGGGGCGGCGAGGGAGGCCAAGGAGTAGGAAAAACAGAAGGGATAGA
ATGGGGAGGGGGGGAAAGAGCATGGAATGGAGGGGGAGCAAGAGGAAGGA
GAAGTGGTGGA
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Coding sequence (CDS) from alignment at scaffold_15:48965..50725+

>mRNA_6223 ID=mRNA_6223|Name=jgi.p|Nanoce1779_2|594203|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_15:48965..50725+ (Nannochloropsis oceanica)
ATGGCGGACACTGCCAGCCCCGTTCCCTTTAAGCTCCTTTTTGTGTGCGT
GGAAAATTCGAATCGCAGTCAGATGAGCCAAGCTTTTGCCAAGATTCTGG
GCGGGGATAAGGTGGAGTCATACAGCGCAGGTAGCAAGCCCAGTGGGATT
GTCAACCCCAAGGCTATTGCGGCTATGCGGGCGATCGGGTACGACCTGTC
AGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAGAGCTTTGCCCCCTTTG
ACGCAGTGGTGACCATGGGCTGTGGCGATGCCTGCCCTTGGATGCCGGCG
AAGCGATTCGTGAACTGGACGATCACTGATCCAAAACACATGGAGCCGGA
GGAGTTCAACAAGATCCGGGACTACATCAAAGGCCTGGTCACTGATCTGT
TGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGCGGCGAGGGAGGCCAAG
GAGTAGATGGCGGACACTGCCAGCCCCGTTCCCTTTAAGCTCCTTTTTGT
GTGCGTGGAAAATTCGAATCGCAGTCAGATGAGCCAAGCTTTTGCCAAGA
TTCTGGGCGGGGATAAGGTGGAGTCATACAGCGCAGGTAGCAAGCCCAGT
GGGATTGTCAACCCCAAGGCTATTGCGGCTATGCGGGCGATCGGGTACGA
CCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAGAGCTTTGCCC
CCTTTGACGCAGTGGTGACCATGGGCTGTGGCGATGCCTGCCCTTGGATG
CCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCCAAAACACATGGA
GCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAGGCCTGGTCACTG
ATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGCGGCGAGGGAG
GCCAAGGAGTAGATGGCGGACACTGCCAGCCCCGTTCCCTTTAAGCTCCT
TTTTGTGTGCGTGGAAAATTCGAATCGCAGTCAGATGAGCCAAGCTTTTG
CCAAGATTCTGGGCGGGGATAAGGTGGAGTCATACAGCGCAGGTAGCAAG
CCCAGTGGGATTGTCAACCCCAAGGCTATTGCGGCTATGCGGGCGATCGG
GTACGACCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAGAGCT
TTGCCCCCTTTGACGCAGTGGTGACCATGGGCTGTGGCGATGCCTGCCCT
TGGATGCCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCCAAAACA
CATGGAGCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAGGCCTGG
TCACTGATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGCGGCG
AGGGAGGCCAAGGAGTAGATGGCGGACACTGCCAGCCCCGTTCCCTTTAA
GCTCCTTTTTGTGTGCGTGGAAAATTCGAATCGCAGTCAGATGAGCCAAG
CTTTTGCCAAGATTCTGGGCGGGGATAAGGTGGAGTCATACAGCGCAGGT
AGCAAGCCCAGTGGGATTGTCAACCCCAAGGCTATTGCGGCTATGCGGGC
GATCGGGTACGACCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCA
AGAGCTTTGCCCCCTTTGACGCAGTGGTGACCATGGGCTGTGGCGATGCC
TGCCCTTGGATGCCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCC
AAAACACATGGAGCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAG
GCCTGGTCACTGATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGG
GCGGCGAGGGAGGCCAAGGAGTAG
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Synonyms
Publications