|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 625888 |
| Track | FilteredModels2 |
| ProteinId | 625802 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:46680..48512 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6222 ID=mRNA_6222|Name=jgi.p|Nanoce1779_2|625802|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ACAGGACCCATCTTGCTGTCACCACAAGCAAGCAGCAGCAGCAGCAGCCA
TGTCGACCAGCCTTCCGCCCTCAATGGGCACTGGCGCCAACGACAACGCA
GAGGCCACCACCCACGCCCAACCCCAGGAGGAGGAAAAGAAGAAACTGTC
TTTCCTGGACAAGTACCTTTCCGGGTGGATCCTCCTCGCGGCGGCCATTG
GGCTGGGCCTGGGTCAGGCCCATGCTGTTATGAAGGCAATCAAGGCCTCG
AGCGTAGGAACGACCAACATCCCCATCGCCATCGGCCTCATCCTCATGAT
CTTTCCCCCTTTGGCCAAGGTCCGCTGGAACAAGATGCGGGACGTCTTTT
CCGATACTTACCTAGTGGCCCTGACGCTGGTCTTGAACTGGGTGGTCGGA
CCTTTTCTGATGTACTTCTTGGCTATCGCCTTTTTCCATGACGCGAAGTA
TTCCTCCTTCATGTCCGGCCTCTCCCTCGTCGGCTGTGCTCGATGCATTG
CCATGGTCATCGTCTGGGTCGAGCTCGCCAAGGGCGACCGCGAGTACTGC
GCTGCCATCGTGGCTCTGAATAGCCTGATCACCATCTTCCTCTACTCCCC
CTACGCGCTTCTCTTTCTCGTCACCTTGCCACAAGCCATGCTTGGCACTT
CAGAGACAAGCACTGTGGATGTGACCATGGCAGATATTGCCATTTCGGTG
GGGATCTACCTAGGCATTCCCCTTGTAGCTGGGGTGCTCTGTTGGGTCAT
ATTGACCAAGGCAAAAGGCAAGGGGTGGTACTACTCCTCTTTCGCTCCCC
GCATCGGCCCCCTGACCCTGGCCGCCCTCCTCTTCACCATTGTCGTCCTT
TTTGCCACCCAGTCCCAAAGCATCATCAGCCAAATTGGTCGGGTCCTGTA
CGCCGCCGTCCCCCTCGCCATCTACTTCCTCATCATGTTCGTAGGCACCT
TCTACCTGGCCTACCTCGCTGATGCCACCTACGCCCAAGCCACCACGCTC
GCATTCACTGCGGCCTCGAACAACTTCGAGCTCGCCTTGGCTGTTGCTGT
GGGTACTTTCGGCTTGGATTCAGGGGAGGCCCTGATGAGCGTCGTGGGTG
CATTGATTGAGATCCCCACTATGCTCTCTCTGGTGAGGATGGCAGAGTAC
TTCAGGGCCAAGTGGTATGAGGGGGAAGAGACGATGCAACCAACGACGCT
TAAGGAGAAGAAGAAAGGAGCAAAGGGGTTGGAGAATGGAAAGGAGGGAG
GGGTCGAGATGCAGGTTTAAGAGCGCCCGCAGCATGTCTTTGCGCGCATG
TGTGTCTG back to topprotein sequence of jgi.p|Nanoce1779_2|625802 >mRNA_6222-protein ID=mRNA_6222-protein|Name=jgi.p|Nanoce1779_2|625802|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSTSLPPSMGTGANDNAEATTHAQPQEEEKKKLSFLDKYLSGWILLAAAI
GLGLGQAHAVMKAIKASSVGTTNIPIAIGLILMIFPPLAKVRWNKMRDVF
SDTYLVALTLVLNWVVGPFLMYFLAIAFFHDAKYSSFMSGLSLVGCARCI
AMVIVWVELAKGDREYCAAIVALNSLITIFLYSPYALLFLVTLPQAMLGT
SETSTVDVTMADIAISVGIYLGIPLVAGVLCWVILTKAKGKGWYYSSFAP
RIGPLTLAALLFTIVVLFATQSQSIISQIGRVLYAAVPLAIYFLIMFVGT
FYLAYLADATYAQATTLAFTAASNNFELALAVAVGTFGLDSGEALMSVVG
ALIEIPTMLSLVRMAEYFRAKWYEGEETMQPTTLKEKKKGAKGLENGKEG
GVEMQV* back to topmRNA from alignment at scaffold_15:46680..48512- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6222 ID=mRNA_6222|Name=jgi.p|Nanoce1779_2|625802|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at scaffold_15:46680..48512- (Nannochloropsis oceanica)
ACAGGACCCATCTTGCTGTCACCACAAGCAAGCAGCAGCAGCAGCAGCCA
TGTCGACCAGCCTTCCGCCCTCAATGGGCACTGGCGCCAACGACAACGCA
GAGGCCACCACCCACGCCCAACCCCAGGAGGAGGAAAAGAAGAAACTGTC
TTTCCTGGACAAGTACCTTTCCGGGTGGATCCTCCTCGCGGCGGCCATTG
GGCTGGGCCTGGGTCAGGCCCATGCTGTTATGAAGGCAATCAAGGCCTCG
AGCGTAGGAACGACCAACATCCCCATCGCCATCGGCCTCATCCTCATGAT
CTTTCCCCCTTTGGCCAAGGTCCGCTGGAACAAGATGCGGGACGTCTTTT
CCGATACTTACCTAGTGGCCCTGACGCTGGTCTTGAACTGGGTGGTCGGA
CCTTTTCTGATGTACTTCTTGGTACGCGAGCCGAGAAAGAGGAAATAGAG
AGAGGGAGGGAGGGCTTGATACTCGAGCGCAGAAAGAGAGGAAAAGGAGA
GAGAAAGGAAGGGAAGAGGAGGAAAATGTCAAGACAGATAAGCCCATGTC
TCGACATCGCACATGTAAATCTACTCTCTCCCAGCTCAGTCTCGAAATTC
ATTCTCCCCCCCCCCCCCCCACTCACCCCAGGCTATCGCCTTTTTCCATG
ACGCGAAGTATTCCTCCTTCATGTCCGGCCTCTCCCTCGTCGGCTGTGCT
CGATGCATTGCCATGGTCATCGTCTGGGTCGAGCTCGCCAAGGGCGACCG
CGAGTACTGCGCTGCCATCGTGGCTCTGAATAGCCTGATCACCATCTTCC
TCTACTCCCCCTACGCGCTTCTCTTTCTCGTCACCTTGCCACAAGCCATG
CTTGGCACTTCAGAGACAAGCACTGTGGATGTGACCATGGCAGATATTGC
CATTTCGGTGGGGATCTACCTAGGCATTCCCCTTGTAGCTGGGGTGCTCT
GTTGGTACGTCCTATGTGTGTGTGCATGTACATGTGTATGTCCCTCTCAG
TCATGTAGCTTGATCCCGATGCGCCATGTCTCTTTTCCGTCCTACTCTTC
CTCCCTTCACGATCCTTCTTCTCACACTGACTTCCACTTTCCTCCTGTCC
TCCCTCCCTCCAGGGTCATATTGACCAAGGCAAAAGGCAAGGGGTGGTAC
TACTCCTCTTTCGCTCCCCGCATCGGCCCCCTGACCCTGGCCGCCCTCCT
CTTCACCATTGTCGTCCTTTTTGCCACCCAGTCCCAAAGCATCATCAGCC
AAGTGAGTACTCCCTCACTCCAACCCATACTCTTACTTCCTATGTTCTGT
TTCTGCTCTATTTTTCTGCTCACTTGCTTTGCGCTCTTTCCTCTTTTGTT
GTAACGTTCATCCCCTTTCCCCCTCACTCCTCATCAAACCTCAACCTCCT
CCCATTAGATTGGTCGGGTCCTGTACGCCGCCGTCCCCCTCGCCATCTAC
TTCCTCATCATGTTCGTAGGCACCTTCTACCTGGCCTACCTCGCTGATGC
CACCTACGCCCAAGCCACCACGCTCGCATTCACTGCGGCCTCGAACAACT
TCGAGCTCGCCTTGGCTGTTGCTGTGGGTACTTTCGGCTTGGATTCAGGG
GAGGCCCTGATGAGCGTCGTGGGTGCATTGATTGAGATCCCCACTATGCT
CTCTCTGGTGAGGATGGCAGAGTACTTCAGGGCCAAGTGGTATGAGGGGG
AAGAGACGATGCAACCAACGACGCTTAAGGAGAAGAAGAAAGGAGCAAAG
GGGTTGGAGAATGGAAAGGAGGGAGGGGTCGAGATGCAGGTTTAAGAGCG
CCCGCAGCATGTCTTTGCGCGCATGTGTGTCTG back to topCoding sequence (CDS) from alignment at scaffold_15:46680..48512- >mRNA_6222 ID=mRNA_6222|Name=jgi.p|Nanoce1779_2|625802|organism=Nannochloropsis oceanica|type=CDS|length=4884bp|location=Sequence derived from alignment at scaffold_15:46680..48512- (Nannochloropsis oceanica)
ATTGGTCGGGTCCTGTACGCCGCCGTCCCCCTCGCCATCTACTTCCTCAT
CATGTTCGTAGGCACCTTCTACCTGGCCTACCTCGCTGATGCCACCTACG
CCCAAGCCACCACGCTCGCATTCACTGCGGCCTCGAACAACTTCGAGCTC
GCCTTGGCTGTTGCTGTGGGTACTTTCGGCTTGGATTCAGGGGAGGCCCT
GATGAGCGTCGTGGGTGCATTGATTGAGATCCCCACTATGCTCTCTCTGG
TGAGGATGGCAGAGTACTTCAGGGCCAAGTGGTATGAGGGGGAAGAGACG
ATGCAACCAACGACGCTTAAGGAGAAGAAGAAAGGAGCAAAGGGGTTGGA
GAATGGAAAGGAGGGAGGGGTCGAGATGCAGGTTTAAGGTCATATTGACC
AAGGCAAAAGGCAAGGGGTGGTACTACTCCTCTTTCGCTCCCCGCATCGG
CCCCCTGACCCTGGCCGCCCTCCTCTTCACCATTGTCGTCCTTTTTGCCA
CCCAGTCCCAAAGCATCATCAGCCAAGCTATCGCCTTTTTCCATGACGCG
AAGTATTCCTCCTTCATGTCCGGCCTCTCCCTCGTCGGCTGTGCTCGATG
CATTGCCATGGTCATCGTCTGGGTCGAGCTCGCCAAGGGCGACCGCGAGT
ACTGCGCTGCCATCGTGGCTCTGAATAGCCTGATCACCATCTTCCTCTAC
TCCCCCTACGCGCTTCTCTTTCTCGTCACCTTGCCACAAGCCATGCTTGG
CACTTCAGAGACAAGCACTGTGGATGTGACCATGGCAGATATTGCCATTT
CGGTGGGGATCTACCTAGGCATTCCCCTTGTAGCTGGGGTGCTCTGTTGA
TGTCGACCAGCCTTCCGCCCTCAATGGGCACTGGCGCCAACGACAACGCA
GAGGCCACCACCCACGCCCAACCCCAGGAGGAGGAAAAGAAGAAACTGTC
TTTCCTGGACAAGTACCTTTCCGGGTGGATCCTCCTCGCGGCGGCCATTG
GGCTGGGCCTGGGTCAGGCCCATGCTGTTATGAAGGCAATCAAGGCCTCG
AGCGTAGGAACGACCAACATCCCCATCGCCATCGGCCTCATCCTCATGAT
CTTTCCCCCTTTGGCCAAGGTCCGCTGGAACAAGATGCGGGACGTCTTTT
CCGATACTTACCTAGTGGCCCTGACGCTGGTCTTGAACTGGGTGGTCGGA
CCTTTTCTGATGTACTTCTTGATTGGTCGGGTCCTGTACGCCGCCGTCCC
CCTCGCCATCTACTTCCTCATCATGTTCGTAGGCACCTTCTACCTGGCCT
ACCTCGCTGATGCCACCTACGCCCAAGCCACCACGCTCGCATTCACTGCG
GCCTCGAACAACTTCGAGCTCGCCTTGGCTGTTGCTGTGGGTACTTTCGG
CTTGGATTCAGGGGAGGCCCTGATGAGCGTCGTGGGTGCATTGATTGAGA
TCCCCACTATGCTCTCTCTGGTGAGGATGGCAGAGTACTTCAGGGCCAAG
TGGTATGAGGGGGAAGAGACGATGCAACCAACGACGCTTAAGGAGAAGAA
GAAAGGAGCAAAGGGGTTGGAGAATGGAAAGGAGGGAGGGGTCGAGATGC
AGGTTTAAGGTCATATTGACCAAGGCAAAAGGCAAGGGGTGGTACTACTC
CTCTTTCGCTCCCCGCATCGGCCCCCTGACCCTGGCCGCCCTCCTCTTCA
CCATTGTCGTCCTTTTTGCCACCCAGTCCCAAAGCATCATCAGCCAAGCT
ATCGCCTTTTTCCATGACGCGAAGTATTCCTCCTTCATGTCCGGCCTCTC
CCTCGTCGGCTGTGCTCGATGCATTGCCATGGTCATCGTCTGGGTCGAGC
TCGCCAAGGGCGACCGCGAGTACTGCGCTGCCATCGTGGCTCTGAATAGC
CTGATCACCATCTTCCTCTACTCCCCCTACGCGCTTCTCTTTCTCGTCAC
CTTGCCACAAGCCATGCTTGGCACTTCAGAGACAAGCACTGTGGATGTGA
CCATGGCAGATATTGCCATTTCGGTGGGGATCTACCTAGGCATTCCCCTT
GTAGCTGGGGTGCTCTGTTGATGTCGACCAGCCTTCCGCCCTCAATGGGC
ACTGGCGCCAACGACAACGCAGAGGCCACCACCCACGCCCAACCCCAGGA
GGAGGAAAAGAAGAAACTGTCTTTCCTGGACAAGTACCTTTCCGGGTGGA
TCCTCCTCGCGGCGGCCATTGGGCTGGGCCTGGGTCAGGCCCATGCTGTT
ATGAAGGCAATCAAGGCCTCGAGCGTAGGAACGACCAACATCCCCATCGC
CATCGGCCTCATCCTCATGATCTTTCCCCCTTTGGCCAAGGTCCGCTGGA
ACAAGATGCGGGACGTCTTTTCCGATACTTACCTAGTGGCCCTGACGCTG
GTCTTGAACTGGGTGGTCGGACCTTTTCTGATGTACTTCTTGATTGGTCG
GGTCCTGTACGCCGCCGTCCCCCTCGCCATCTACTTCCTCATCATGTTCG
TAGGCACCTTCTACCTGGCCTACCTCGCTGATGCCACCTACGCCCAAGCC
ACCACGCTCGCATTCACTGCGGCCTCGAACAACTTCGAGCTCGCCTTGGC
TGTTGCTGTGGGTACTTTCGGCTTGGATTCAGGGGAGGCCCTGATGAGCG
TCGTGGGTGCATTGATTGAGATCCCCACTATGCTCTCTCTGGTGAGGATG
GCAGAGTACTTCAGGGCCAAGTGGTATGAGGGGGAAGAGACGATGCAACC
AACGACGCTTAAGGAGAAGAAGAAAGGAGCAAAGGGGTTGGAGAATGGAA
AGGAGGGAGGGGTCGAGATGCAGGTTTAAGGTCATATTGACCAAGGCAAA
AGGCAAGGGGTGGTACTACTCCTCTTTCGCTCCCCGCATCGGCCCCCTGA
CCCTGGCCGCCCTCCTCTTCACCATTGTCGTCCTTTTTGCCACCCAGTCC
CAAAGCATCATCAGCCAAGCTATCGCCTTTTTCCATGACGCGAAGTATTC
CTCCTTCATGTCCGGCCTCTCCCTCGTCGGCTGTGCTCGATGCATTGCCA
TGGTCATCGTCTGGGTCGAGCTCGCCAAGGGCGACCGCGAGTACTGCGCT
GCCATCGTGGCTCTGAATAGCCTGATCACCATCTTCCTCTACTCCCCCTA
CGCGCTTCTCTTTCTCGTCACCTTGCCACAAGCCATGCTTGGCACTTCAG
AGACAAGCACTGTGGATGTGACCATGGCAGATATTGCCATTTCGGTGGGG
ATCTACCTAGGCATTCCCCTTGTAGCTGGGGTGCTCTGTTGATGTCGACC
AGCCTTCCGCCCTCAATGGGCACTGGCGCCAACGACAACGCAGAGGCCAC
CACCCACGCCCAACCCCAGGAGGAGGAAAAGAAGAAACTGTCTTTCCTGG
ACAAGTACCTTTCCGGGTGGATCCTCCTCGCGGCGGCCATTGGGCTGGGC
CTGGGTCAGGCCCATGCTGTTATGAAGGCAATCAAGGCCTCGAGCGTAGG
AACGACCAACATCCCCATCGCCATCGGCCTCATCCTCATGATCTTTCCCC
CTTTGGCCAAGGTCCGCTGGAACAAGATGCGGGACGTCTTTTCCGATACT
TACCTAGTGGCCCTGACGCTGGTCTTGAACTGGGTGGTCGGACCTTTTCT
GATGTACTTCTTGATTGGTCGGGTCCTGTACGCCGCCGTCCCCCTCGCCA
TCTACTTCCTCATCATGTTCGTAGGCACCTTCTACCTGGCCTACCTCGCT
GATGCCACCTACGCCCAAGCCACCACGCTCGCATTCACTGCGGCCTCGAA
CAACTTCGAGCTCGCCTTGGCTGTTGCTGTGGGTACTTTCGGCTTGGATT
CAGGGGAGGCCCTGATGAGCGTCGTGGGTGCATTGATTGAGATCCCCACT
ATGCTCTCTCTGGTGAGGATGGCAGAGTACTTCAGGGCCAAGTGGTATGA
GGGGGAAGAGACGATGCAACCAACGACGCTTAAGGAGAAGAAGAAAGGAG
CAAAGGGGTTGGAGAATGGAAAGGAGGGAGGGGTCGAGATGCAGGTTTAA
GGTCATATTGACCAAGGCAAAAGGCAAGGGGTGGTACTACTCCTCTTTCG
CTCCCCGCATCGGCCCCCTGACCCTGGCCGCCCTCCTCTTCACCATTGTC
GTCCTTTTTGCCACCCAGTCCCAAAGCATCATCAGCCAAGCTATCGCCTT
TTTCCATGACGCGAAGTATTCCTCCTTCATGTCCGGCCTCTCCCTCGTCG
GCTGTGCTCGATGCATTGCCATGGTCATCGTCTGGGTCGAGCTCGCCAAG
GGCGACCGCGAGTACTGCGCTGCCATCGTGGCTCTGAATAGCCTGATCAC
CATCTTCCTCTACTCCCCCTACGCGCTTCTCTTTCTCGTCACCTTGCCAC
AAGCCATGCTTGGCACTTCAGAGACAAGCACTGTGGATGTGACCATGGCA
GATATTGCCATTTCGGTGGGGATCTACCTAGGCATTCCCCTTGTAGCTGG
GGTGCTCTGTTGATGTCGACCAGCCTTCCGCCCTCAATGGGCACTGGCGC
CAACGACAACGCAGAGGCCACCACCCACGCCCAACCCCAGGAGGAGGAAA
AGAAGAAACTGTCTTTCCTGGACAAGTACCTTTCCGGGTGGATCCTCCTC
GCGGCGGCCATTGGGCTGGGCCTGGGTCAGGCCCATGCTGTTATGAAGGC
AATCAAGGCCTCGAGCGTAGGAACGACCAACATCCCCATCGCCATCGGCC
TCATCCTCATGATCTTTCCCCCTTTGGCCAAGGTCCGCTGGAACAAGATG
CGGGACGTCTTTTCCGATACTTACCTAGTGGCCCTGACGCTGGTCTTGAA
CTGGGTGGTCGGACCTTTTCTGATGTACTTCTTG back to top
|