jgi.p|Nanoce1779_2|573552, mRNA_622 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573552
Unique NamemRNA_622
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1917
Alignment locationscaffold_2:34943..37097 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573638
TrackFilteredModels2
ProteinId573552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:34943..37097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573552gene_622Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573552mRNA_622-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_622CDS_622Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_622 ID=mRNA_622|Name=jgi.p|Nanoce1779_2|573552|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp
AGCACAGGGCAGGGGAGACGGAGGCAAAATGCTACGGTAAATCCTGCCGG
CCCACCAGTTGGTGCTCTAACTCCGGAGGCTGACCGAGGGATAGGCTAGG
TGATTCTCCCTGCACGTCCCTGCTCGAAAGTCAAAGCCTCCATCAGGACA
AACAGCAAGCCAAGAATAAATCGTTGGACTGCAAGCCGCTGGTTATATAC
AGTACGCACTGCCCACGCTCAAGCAGCGAGATGGCTACTAAGCACAATCC
TTATTCGTTGTCATCAGGAGGGGGAGGCACCCAAGCAGCACACCTACGTC
ATCTCGGCGTGCTTGTCCAAGACCGCCAGCAGCAGGATCAAAGGGAGCAA
CAAATGCAGCAGGAACAGCAGCTAGTGCAGCTGTCTGAGCTAGACGCTCC
GCAATATCACCAGCAGCAGCAAGCTTTCCAGCTTGCCCTTCCCGTGCCTC
ATTGGAGAGACCTCAACGATGAGGACAACGACAGCCTGTCAAGCGCGAAT
AGCGCAGGCAGAGATGGAGGATGCAGCAGCATCAGTAGCTTGGGTGGGGT
AAATGCGGGTGGTATCCCGGGCCATGATGGTACTGGTACGGGTTGTAGCA
GCAGCAGTTGTAGTGGGGGAGCATCAGAACGGCGGACAAAAAAGAGGAAC
CTCTCCAACCCGCAGACGAGTCGATGGTTGACATGCCAAGTGTGCCGCAT
TAGTAAGACTAAATGCGACGGCAACTTCCCCTGCTCCCGTTGCTGGAACC
GTATGTGCTTCTGCTGTCGTCCACAGACCCAAATTCTTGGCCAAGCTACC
ACCACCAATGCCGCCGGGGCAGGAGGGCGGAAGAGACGTCGTCGTCGCGC
CTTGCCGGAGGAGGTGGAGGATCTGCTGGAGGAGCAGAAGCAGGACGAGG
CAATGGCGGTCGAGGGAAGCTCGCCCTATCTCCACCTTGTCTTCCTTCGT
GCCCGCCCTCAACCGCTGGTGGACTCTTTTTTACAGGCGTTTGCGCGGGT
CCACCAGGAGCAGAAACAGTGGCATCATCAATCGGCAGGAGGAGGAGGAG
GACAAAGGATGGACAGAGCGAAGGCCGTACGGTTGTTGCGGTGCTGGCAA
CGGCGGAGTGCGTATGTGGGTGCGGACATTTCGAATGGAATTGTAGGGGC
ATTAGTTCGGCTGTTCCAGGTCACTGCCGAAGAACTTGACGGAGGACAGG
GAGGGAGTCAGGGGGGAGGGGAGGAAGGAAGGGAAGAGGGGCAGTCGACG
GAGGAGATGGTGAAGGCGGGTGAGAGGTTGAAGCATTCACGGGCTTTTTA
TTTGGCGGATGAGGCAGAGGGCGAGGACGAGAGGGAGGACGAGGCTGCAG
ATCGGGAGGAGGATGAGTATGAGGAAGAGGAAGAGGAGGAAAAGGGGTTA
AATAGGAGGCCGCCGCAATTGAAGATGAGCAATAAGAAGGACACCACGGG
GGTGCTCATGGCAGTGAGCGATGGAAGCTTTCTCCATTGGGCAAGCAACG
CCGCCTTCGATCGCCTCTTCCTCGGAGTGGCGGGCCTCTTGAACGAGTCC
GTTGCCCGTCGTCGTCTCCCCATCCTCCTCTTCGCTTCCCTTCTCCACCC
CCAAGACCGTGAAGTGTGGTTCCGGAGCGTCATCCTCGCCCTCTTTACAT
CATCTCCTCCTCCTTCTCCTGTGCCTCCTGCTCCTGCTCCTGCTGCTCAC
CAGATCAAGGCCATCAGCCAAGATGGGCGTATTTCCTCCTACATCCTGAG
TGTGACCCCCATCCACGCCTCCTATCTGCGCAAACGACGGCGGCAAGATC
TACCACCACCACCACCATTGGCTTCAATACCCCGCTCCTCCTCCTCCCCT
CCCTCCACCTCATCCTTCTCGCTAGAGTGCTCTTCTGAGCCCGGGTATTG
CCCGAAGGAATGGGGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|573552

>mRNA_622-protein ID=mRNA_622-protein|Name=jgi.p|Nanoce1779_2|573552|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MRRQLPLLPLLEPYVLLLSSTDPNSWPSYHHQCRRGRRAEETSSSRLAGG
GGGSAGGAEAGRGNGGRGKLALSPPCLPSCPPSTAGGLFFTGVCAGPPGA
ETVASSIGRRRRRTKDGQSEGRTVVAVLATAECVCGCGHFEWNCRGISSA
VPGHCRRT*
back to top

mRNA from alignment at scaffold_2:34943..37097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_622 ID=mRNA_622|Name=jgi.p|Nanoce1779_2|573552|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp|location=Sequence derived from alignment at scaffold_2:34943..37097+ (Nannochloropsis oceanica)
AGCACAGGGCAGGGGAGACGGAGGCAAAATGCTACGGTAAATCCTGCCGG
CCCACCAGTTGGTGCTCTAACTCCGGAGGCTGACCGAGGGATAGGCTAGG
TGATTCTCCCTGCACGTCCCTGCTCGAAAGTCAAAGCCTCCATCAGGACA
AACAGCAAGCCAAGAATAAATCGTTGGACTGCAAGCCGCTGGTTATATAC
AGTACGCACTGCCCACGCTCAAGCAGCGAGATGGCTACTAAGCACAATCC
TTATTCGTTGTCATCAGGAGGGGGAGGCACCCAAGCAGCACACCTACGTC
ATCTCGGCGTGCTTGTCCAAGACCGCCAGCAGCAGGATCAAAGGGAGCAA
CAAATGCAGCAGGAACAGCAGCTAGTGCAGCTGTCTGAGCTAGACGCTCC
GCAATATCACCAGCAGCAGCAAGCTTTCCAGCTTGCCCTTCCCGTGCCTC
ATTGGAGAGACCTCAACGATGAGGACAACGACAGCCTGTCAAGCGCGAAT
AGCGCAGGCAGAGATGGAGGATGCAGCAGCATCAGTAGCTTGGGTGGGGT
AAATGCGGGTGGTATCCCGGGCCATGATGGTACTGGTACGGGTTGTAGCA
GCAGCAGTTGTAGTGGGGGAGCATCAGAACGGCGGACAAAAAAGAGGAAC
CTCTCCAACCCGCAGACGAGTCGATGGTTGACATGCCAAGTGTGCCGCAT
TAGTAAGACTAAATGGTACGTTTATGGGATGGATAGAAGATCGCCTACAG
CTAGGAGGGCGATTGATTGCTATTGGTTGCTTTCAGCTACTGCCGCTGGT
GATGCTGCTCCATTTCACGTGTTTTCCTGCTTCTCTCATTCTGAGCAAGC
TACAGATAACCCCCAACCCGTTTCCTTGACTGTCATTGTGTTTATCCCTT
TACTTTTTCACCCTTGCTAAATCTTTGCACTTTCATCCTTCATCATTCCA
CAGCGACGGCAACTTCCCCTGCTCCCGTTGCTGGAACCGTATGTGCTTCT
GCTGTCGTCCACAGACCCAAATTCTTGGCCAAGCTACCACCACCAATGCC
GCCGGGGCAGGAGGGCGGAAGAGACGTCGTCGTCGCGCCTTGCCGGAGGA
GGTGGAGGATCTGCTGGAGGAGCAGAAGCAGGACGAGGCAATGGCGGTCG
AGGGAAGCTCGCCCTATCTCCACCTTGTCTTCCTTCGTGCCCGCCCTCAA
CCGCTGGTGGACTCTTTTTTACAGGCGTTTGCGCGGGTCCACCAGGAGCA
GAAACAGTGGCATCATCAATCGGCAGGAGGAGGAGGAGGACAAAGGATGG
ACAGAGCGAAGGCCGTACGGTTGTTGCGGTGCTGGCAACGGCGGAGTGCG
TATGTGGGTGCGGACATTTCGAATGGAATTGTAGGGGCATTAGTTCGGCT
GTTCCAGGTCACTGCCGAAGAACTTGACGGAGGACAGGGAGGGAGTCAGG
GGGGAGGGGAGGAAGGAAGGGAAGAGGGGCAGTCGACGGAGGAGATGGTG
AAGGCGGGTGAGAGGTTGAAGCATTCACGGGCTTTTTATTTGGCGGATGA
GGCAGAGGGCGAGGACGAGAGGGAGGACGAGGCTGCAGATCGGGAGGAGG
ATGAGTATGAGGAAGAGGAAGAGGAGGAAAAGGGGTTAAATAGGAGGCCG
CCGCAATTGAAGATGAGCAATAAGAAGGACACCACGGGGGTGCTCATGGC
AGTGAGCGATGGAAGCTTTCTCCATTGGGCAAGCAACGCCGCCTTCGATC
GCCTCTTCCTCGGAGTGGCGGGCCTCTTGAACGAGTCCGTTGCCCGTCGT
CGTCTCCCCATCCTCCTCTTCGCTTCCCTTCTCCACCCCCAAGACCGTGA
AGTGTGGTTCCGGAGCGTCATCCTCGCCCTCTTTACATCATCTCCTCCTC
CTTCTCCTGTGCCTCCTGCTCCTGCTCCTGCTGCTCACCAGATCAAGGCC
ATCAGCCAAGATGGGCGTATTTCCTCCTACATCCTGAGTGTGACCCCCAT
CCACGCCTCCTATCTGCGCAAACGACGGCGGCAAGATCTACCACCACCAC
CACCATTGGCTTCAATACCCCGCTCCTCCTCCTCCCCTCCCTCCACCTCA
TCCTTCTCGCTAGAGTGCTCTTCTGAGCCCGGGTATTGCCCGAAGGAATG
GGGGA
back to top

Coding sequence (CDS) from alignment at scaffold_2:34943..37097+

>mRNA_622 ID=mRNA_622|Name=jgi.p|Nanoce1779_2|573552|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_2:34943..37097+ (Nannochloropsis oceanica)
ATGCGACGGCAACTTCCCCTGCTCCCGTTGCTGGAACCGTATGTGCTTCT
GCTGTCGTCCACAGACCCAAATTCTTGGCCAAGCTACCACCACCAATGCC
GCCGGGGCAGGAGGGCGGAAGAGACGTCGTCGTCGCGCCTTGCCGGAGGA
GGTGGAGGATCTGCTGGAGGAGCAGAAGCAGGACGAGGCAATGGCGGTCG
AGGGAAGCTCGCCCTATCTCCACCTTGTCTTCCTTCGTGCCCGCCCTCAA
CCGCTGGTGGACTCTTTTTTACAGGCGTTTGCGCGGGTCCACCAGGAGCA
GAAACAGTGGCATCATCAATCGGCAGGAGGAGGAGGAGGACAAAGGATGG
ACAGAGCGAAGGCCGTACGGTTGTTGCGGTGCTGGCAACGGCGGAGTGCG
TATGTGGGTGCGGACATTTCGAATGGAATTGTAGGGGCATTAGTTCGGCT
GTTCCAGGTCACTGCCGAAGAACTTGAATGCGACGGCAACTTCCCCTGCT
CCCGTTGCTGGAACCGTATGTGCTTCTGCTGTCGTCCACAGACCCAAATT
CTTGGCCAAGCTACCACCACCAATGCCGCCGGGGCAGGAGGGCGGAAGAG
ACGTCGTCGTCGCGCCTTGCCGGAGGAGGTGGAGGATCTGCTGGAGGAGC
AGAAGCAGGACGAGGCAATGGCGGTCGAGGGAAGCTCGCCCTATCTCCAC
CTTGTCTTCCTTCGTGCCCGCCCTCAACCGCTGGTGGACTCTTTTTTACA
GGCGTTTGCGCGGGTCCACCAGGAGCAGAAACAGTGGCATCATCAATCGG
CAGGAGGAGGAGGAGGACAAAGGATGGACAGAGCGAAGGCCGTACGGTTG
TTGCGGTGCTGGCAACGGCGGAGTGCGTATGTGGGTGCGGACATTTCGAA
TGGAATTGTAGGGGCATTAGTTCGGCTGTTCCAGGTCACTGCCGAAGAAC
TTGA
back to top
Synonyms
Publications