|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 594261 |
| Track | FilteredModels2 |
| ProteinId | 594175 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:29509..32419 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6217 ID=mRNA_6217|Name=jgi.p|Nanoce1779_2|594175|organism=Nannochloropsis oceanica|type=mRNA|length=2544bp
ACAGCGCCAGAGGAAGATCGAATGCATAAGTGGTAGAGGCCAGACAGTGG
CGTGGAGGCTGGCTGGGAAAGACGACGCAGCACAGACTCACAAAAGTGAC
AGTTGTGGGCGGCAATGCTGGAATGTCCGAGGAGGAAGACGCACAAGCGC
TAATCGACCCTTCCATCACCGGCAATGCCAGTACCTATCGCCCTTCCTGT
GCGCGCTGCCGCCGCCCTCCGCGTGTCTGCCTCTGCCCCTTTCTTTCTCC
AGCGCGTCTAACCTTGCCTCCCCACCTCTCAATTATCATCCTTCAACACG
CGGCGGAAGGGAAGAGCAACCCGGTCAAAGCTACCGTGTCAATTCTCGAG
GCGGTGTTTGAATCTCAGGGAGGGCAGGAGAAAGAGCTAGTAGAGACAGG
CACTGGAGAAGTGAGAACTTTGAGAAAGACGAACGAAGCACGCAATGGAG
GGTTGATCGTCATATCATGCCCAAAAGGCATGTTAAAAAGAGAAATGGAT
GCACGGCTGGCCCGCGCTTTTGAGGAGGAGGGGACTGTGTTGCTGTACCC
GGCGGAGGGAGCGAGAGACGTGAGACAGCTGCTGGTAGATCGGAAGAAAG
GAAGGAAAGAAGACGGAGACGAAGGGGGAGGGGTAAAGGGAGGAGGTCGA
GAAGGTTGTGAATGGAAAAATACGTTGATTGTCCTGGATGGCACGTGGGA
GTCAGCGCGGAGGATGTATACTCGCAACACATGTCTCCACGGCCTGCCGA
CCGTGTGCCTCCCCCTCCCTTCTTCCCTCCCTTTCCCCGTTCCATCCCCT
ACCCTGTCCTCCTCATCCACGCCACGAGCCAGCGGGACGGACGGTATCGA
CGAACAATTAATTTGGCTCGCACGTCCGCCCATTTTCACTGTCCGCAAGG
AGCCCCCAAAGGTCCTGGGAAAGGGAGGGAGGAGCACAGCAGAGGCAGTG
GCCTTGGTACTCTTCTTACTCGGGGAAAAACAGCTTGCAGAGGCTATCAT
TGAAGCCGTGCGAAGGGCGAACGGGATGCAGCTTTCATTGACTGACCCTG
CCAAAGTCCGGCACCGGCGAGAGCGGAAGGGCTACATAGAAAACCTGTAC
AGTGCGAGCCACGAACAAGCCTTTTTTCACATGCGCTGAAGTGGAAAACA
TGATACAATAACTGAGACGATCGCTGACCAAGTTCGCTCATCCGAGAGTA
ATTTCCAACCGCGCTGTCCTCACTATTCTCTTCCTTTGTCGTTCGTGCTC
TCAGGAATCGGCGGGAGCCCAAGCAATGATCCCACGGTTTCTAATACCTG
CCACCTGTGCCTGTCCCCCACCACGCGCACATGTTTCTTTTTCTAAACGG
AACATTGTGTGGATGGACTGGAGGGTGAATGAAGCCTCGTCATTTGAGCT
CAATGTTTGCGGCACCTCTTAAGAGTTACAGTTGTTGCCGCGCGTCGGAT
CCTCGAGGGTGCCGTTGAACAGTAGGGGAGGGCAAAGTGAGCAACGAGAA
AGGAGCAAAACGAGAACGATGGCCAGTCCGACATGCTTAAAGATAGAGCT
CTTGGTCACAGAGCGCCGTTAGGGCATACAAGTAACTCTTATCTTCCTTG
TTGTACAATGTCAATGTGTCTGTGCCTGCGCTAACTTGTTTCTTGATCCC
GGCAAAATTGGCGCTTCTGCCCTGCCTCATCACCCAAAGGAGATGAAGCC
GACGAAGCAATTATGATTACTTTTCAATGGCGCCTGAGGCATAAAGCTTC
TGGTTTTTGATGTTGGTACACAATGTGTCTGTCACGATTCATCGGGACAT
GGGTTTTAAGTTATATAGTGTGGCCGCAAGCTCGAGCGCTGCTTTTGAAA
TTTCTCATTTTTTCACACTCCTTTCCCTTTCTGATTCGCTTTCATCTCTA
TCCCCTCCCTCCCACTCTGTTGATTTCTTCCCTCGTGCTATAGCAGCCAG
CTTCTGGATCGCAGCAGTTCGCCAACTGCTCACCTGCTGGCTCTATTGTT
TGTCTGAGACGCTCCTGTCCCTCTGAATTCACACTTTTTTGTTATTTTCA
TACATATTTCTGCAACAATGGCACTCATTCTCAAGGCAATGACGCAGCAA
AGCTTTTACAATATCTCTTGACGCATTAAGTGAAGGTCCGGAGGGACCGG
TGCTGCTGCTGCTGCGAGTCGAATTGTTAATGATCTTGCTGCATGTGATA
CTGCTGCTGCTGCTGCTGATATGAGGGTGGCTCCTGGTGCTGCTGCGCGT
TGTTGAAGTCTTTCTCCCCGGCCACCTCGTCCATCATAAACTCGAACGTC
TCGTCGTCAGGGAAAGCAAAATCTTCCATCACCATGGCTTTAGGCTCTAG
ACCAGAGGCATCGTCTGCCGACAGCTGCACTGCTTCCAATCCTCCCTCGC
TTCCTCCCCCCAGCCCTCCTTCCACAAGTTGCTTGTGCTGCTGCTGGTTC
TGCTGCTGGTAGACTTGCTGCTGGCGGAGGGCGAGCTGGTAGATGTCCAC
GCGCGGAGGAGGAGAGGGAGTAGGGATGGAGATGGGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|594175 >mRNA_6217-protein ID=mRNA_6217-protein|Name=jgi.p|Nanoce1779_2|594175|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MSEEEDAQALIDPSITGNASTYRPSCARCRRPPRVCLCPFLSPARLTLPP
HLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTL
RKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDV
RQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYT
RNTCLHGLPTVCLPLPSSLPFPVPSPTLSSSSTPRASGTDGIDEQLIWLA
RPPIFTVRKEPPKVLGKGGRSTAEAVALVLFLLGEKQLAEAIIEAVRRAN
GMQLSLTDPAKVRHRRERKGYIENLYSASHEQAFFHMR* back to topmRNA from alignment at scaffold_15:29509..32419- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6217 ID=mRNA_6217|Name=jgi.p|Nanoce1779_2|594175|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp|location=Sequence derived from alignment at scaffold_15:29509..32419- (Nannochloropsis oceanica)
ACAGCGCCAGAGGAAGATCGAATGCATAAGTGGTAGAGGCCAGACAGTGG
CGTGGAGGCTGGCTGGGAAAGACGACGCAGCACAGACTCACAAAAGTGAC
AGTTGTGGGCGGCAATGCTGGAATGTCCGAGGAGGAAGACGCACAAGCGC
TAATCGACCCTTCCATCACCGGCAATGCCAGTACCTATCGCCCTTCCTGT
GCGGTAAGCAAATTTTTCTCCCTTCCCATTTCTGCACCCCGCCCTGTGCA
TCCCTATTTCCATCCCATTTGACCTCCTCCCTCCCGCCCTCTCCATACTC
CAACCCTCCTTGCCAGCGCTGCCGCCGCCCTCCGCGTGTCTGCCTCTGCC
CCTTTCTTTCTCCAGCGCGTCTAACCTTGCCTCCCCACCTCTCAATTATC
ATCCTTCAACACGCGGCGGAAGGGAAGAGCAACCCGGTCAAAGCTACCGT
GTCAATTCTCGAGGCGGTGTTTGAATCTCAGGGAGGGCAGGAGAAAGAGC
TAGTAGAGACAGGCACTGGAGAAGTGAGAACTTTGAGAAAGACGAACGAA
GCACGCAATGGAGGGTTGATCGTCATATCATGCCCAAAAGGCATGTTAAA
AAGAGAAATGGATGCACGGCTGGCCCGCGCTTTTGAGGAGGAGGGGACTG
TGTTGCTGTACCCGGCGGAGGGAGCGAGAGACGTGAGACAGCTGCTGGTA
GATCGGAAGAAAGGAAGGAAAGAAGACGGAGACGAAGGGGGAGGGGTAAA
GGGAGGAGGTCGAGAAGGTTGTGAATGGAAAAATACGTTGATTGTCCTGG
ATGGCACGTGGGAGTCAGCGCGGAGGATGTATACTCGCAACACATGTCTC
CACGGCCTGCCGACCGTGTGCCTCCCCCTCCCTTCTTCCCTCCCTTTCCC
CGTTCCATCCCCTACCCTGTCCTCCTCATCCACGCCACGAGCCAGCGGGA
CGGACGGTATCGACGAACAATTAATTTGGCTCGCACGTCCGCCCATTTTC
ACTGTCCGCAAGGAGCCCCCAAAGGTCCTGGGAAAGGGAGGGAGGAGCAC
AGCAGAGGCAGTGGCCTTGGTACTCTTCTTACTCGGGGAAAAACAGCTTG
CAGAGGCTATCATTGAAGCCGTGCGAAGGGCGAACGGGATGCAGCTTTCA
TTGACTGACCCTGCCAAAGTCCGGCACCGGCGAGAGCGGAAGGGCTACAT
AGAAAACCTGTACAGTGCGAGCCACGAACAAGCCTTTTTTCACATGCGCT
GAAGTGGAAAACATGATACAATAACTGAGACGATCGCTGACCAAGTTCGC
TCATCCGAGAGTAATTTCCAACCGCGCTGTCCTCACTATTCTCTTCCTTT
GTCGTTCGTGCTCTCAGGAATCGGCGGGAGCCCAAGCAATGATCCCACGG
TTTCTAATACCTGCCACCTGTGCCTGTCCCCCACCACGCGCACATGTTTC
TTTTTCTAAACGGAACATTGTGTGGATGGACTGGAGGGTGAATGAAGCCT
CGTCATTTGAGCTCAATGTTTGCGGCACCTCTTAAGAGTTACAGTTGTTG
CCGCGCGTCGGATCCTCGAGGGTGCCGTTGAACAGTAGGGGAGGGCAAAG
TGAGCAACGAGAAAGGAGCAAAACGAGAACGATGGCCAGTCCGACATGCT
TAAAGATAGAGCTCTTGGTCACAGAGCGCCGTTAGGGCATACAAGTAACT
CTTATCTTCCTTGTTGTACAATGTCAATGTGTCTGTGCCTGCGCTAACTT
GTTTCTTGATCCCGGCAAAATTGGCGCTTCTGCCCTGCCTCATCACCCAA
AGGAGATGAAGCCGACGAAGCAATTATGATTACTTTTCAATGGCGCCTGA
GGCATAAAGCTTCTGGTTTTTGATGTTGGTACACAATGTGTCTGTCACGA
TTCATCGGGACATGGGTTTTAAGTTATATAGTGTGGCCGCAAGCTCGAGC
GCTGCTTTTGAAATTTCTCATTTTTTCACACTCCTTTCCCTTTCTGATTC
GCTTTCATCTCTATCCCCTCCCTCCCACTCTGTTGATTTCTTCCCTCGTG
CTATAGCAGCCAGCTTCTGGATCGCAGCAGTTCGCCAACTGCTCACCTGC
TGGCTCTATTGTTTGTCTGAGACGCTCCTGTCCCTCTGAATTCACACTTT
TTTGTTATTTTCATACATATTTCTGCAACAATGGCACTCATTCTCAAGGC
AATGACGCAGCAAAGCTTTTACAATATCTCTTGACGCATTAAGTGAAGGT
CCGGAGGGACCGGTGCTGCTGCTGCTGCGAGTCGAATTGTTAATGATCTT
GCTGCATGTGATACTGCTGCTGCTGCTGCTGATATGAGGGTGGCTCCTGG
TGCTGCTGCGCGTTGTTGAAGTCTGTTTCGAGTGAGAAAGGCAGATGTAA
GAAAGTGACCTTTCCAACCGCCTACCAGTCGCCCTCCCTCACCCCCTCTA
CCCCTTCCTCTCCCTCCTTCGCACCTTTCTCCCCGGCCACCTCGTCCATC
ATAAACTCGAACGTCTCGTCGTCAGGGAAAGCAAAATCTGTGTCGAGGGA
GGGAGGGAGGAAGGGGAGGACAGGGAGAACGTGAGCAGTGCTGCCTCCTA
GTGCAAGTTGAGTATCCACCCCACGCATAACCTGACACCCCTCCCTCCTT
TCACTCCTCCTTCCTTCCCTCCTTCCCTCCTTCCCTCACCTTCCATCACC
ATGGCTTTAGGCTCTAGACCAGAGGCATCGTCTGCCGACAGCTGCACTGC
TTCCAATCCTCCCTCGCTTCCTCCCCCCAGCCCTCCTTCCACAAGTTGCT
TGTGCTGCTGCTGGTTCTGCTGCTGGTAGACTTGCTGCTGGCGGAGGGCG
AGCTGGTAGATGTCCACGCGCGGAGGAGGAGAGGGAGTAGGGATGGAGAT
GGGGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_15:29509..32419- >mRNA_6217 ID=mRNA_6217|Name=jgi.p|Nanoce1779_2|594175|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_15:29509..32419- (Nannochloropsis oceanica)
GCGCTGCCGCCGCCCTCCGCGTGTCTGCCTCTGCCCCTTTCTTTCTCCAG
CGCGTCTAACCTTGCCTCCCCACCTCTCAATTATCATCCTTCAACACGCG
GCGGAAGGGAAGAGCAACCCGGTCAAAGCTACCGTGTCAATTCTCGAGGC
GGTGTTTGAATCTCAGGGAGGGCAGGAGAAAGAGCTAGTAGAGACAGGCA
CTGGAGAAGTGAGAACTTTGAGAAAGACGAACGAAGCACGCAATGGAGGG
TTGATCGTCATATCATGCCCAAAAGGCATGTTAAAAAGAGAAATGGATGC
ACGGCTGGCCCGCGCTTTTGAGGAGGAGGGGACTGTGTTGCTGTACCCGG
CGGAGGGAGCGAGAGACGTGAGACAGCTGCTGGTAGATCGGAAGAAAGGA
AGGAAAGAAGACGGAGACGAAGGGGGAGGGGTAAAGGGAGGAGGTCGAGA
AGGTTGTGAATGGAAAAATACGTTGATTGTCCTGGATGGCACGTGGGAGT
CAGCGCGGAGGATGTATACTCGCAACACATGTCTCCACGGCCTGCCGACC
GTGTGCCTCCCCCTCCCTTCTTCCCTCCCTTTCCCCGTTCCATCCCCTAC
CCTGTCCTCCTCATCCACGCCACGAGCCAGCGGGACGGACGGTATCGACG
AACAATTAATTTGGCTCGCACGTCCGCCCATTTTCACTGTCCGCAAGGAG
CCCCCAAAGGTCCTGGGAAAGGGAGGGAGGAGCACAGCAGAGGCAGTGGC
CTTGGTACTCTTCTTACTCGGGGAAAAACAGCTTGCAGAGGCTATCATTG
AAGCCGTGCGAAGGGCGAACGGGATGCAGCTTTCATTGACTGACCCTGCC
AAAGTCCGGCACCGGCGAGAGCGGAAGGGCTACATAGAAAACCTGTACAG
TGCGAGCCACGAACAAGCCTTTTTTCACATGCGCTGAATGTCCGAGGAGG
AAGACGCACAAGCGCTAATCGACCCTTCCATCACCGGCAATGCCAGTACC
TATCGCCCTTCCTGTGCGCGCTGCCGCCGCCCTCCGCGTGTCTGCCTCTG
CCCCTTTCTTTCTCCAGCGCGTCTAACCTTGCCTCCCCACCTCTCAATTA
TCATCCTTCAACACGCGGCGGAAGGGAAGAGCAACCCGGTCAAAGCTACC
GTGTCAATTCTCGAGGCGGTGTTTGAATCTCAGGGAGGGCAGGAGAAAGA
GCTAGTAGAGACAGGCACTGGAGAAGTGAGAACTTTGAGAAAGACGAACG
AAGCACGCAATGGAGGGTTGATCGTCATATCATGCCCAAAAGGCATGTTA
AAAAGAGAAATGGATGCACGGCTGGCCCGCGCTTTTGAGGAGGAGGGGAC
TGTGTTGCTGTACCCGGCGGAGGGAGCGAGAGACGTGAGACAGCTGCTGG
TAGATCGGAAGAAAGGAAGGAAAGAAGACGGAGACGAAGGGGGAGGGGTA
AAGGGAGGAGGTCGAGAAGGTTGTGAATGGAAAAATACGTTGATTGTCCT
GGATGGCACGTGGGAGTCAGCGCGGAGGATGTATACTCGCAACACATGTC
TCCACGGCCTGCCGACCGTGTGCCTCCCCCTCCCTTCTTCCCTCCCTTTC
CCCGTTCCATCCCCTACCCTGTCCTCCTCATCCACGCCACGAGCCAGCGG
GACGGACGGTATCGACGAACAATTAATTTGGCTCGCACGTCCGCCCATTT
TCACTGTCCGCAAGGAGCCCCCAAAGGTCCTGGGAAAGGGAGGGAGGAGC
ACAGCAGAGGCAGTGGCCTTGGTACTCTTCTTACTCGGGGAAAAACAGCT
TGCAGAGGCTATCATTGAAGCCGTGCGAAGGGCGAACGGGATGCAGCTTT
CATTGACTGACCCTGCCAAAGTCCGGCACCGGCGAGAGCGGAAGGGCTAC
ATAGAAAACCTGTACAGTGCGAGCCACGAACAAGCCTTTTTTCACATGCG
CTGAATGTCCGAGGAGGAAGACGCACAAGCGCTAATCGACCCTTCCATCA
CCGGCAATGCCAGTACCTATCGCCCTTCCTGTGC back to top
|