jgi.p|Nanoce1779_2|86833, mRNA_6215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|86833
Unique NamemRNA_6215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length775
Alignment locationscaffold_15:21849..22938 +

Link to JBrowse

Properties
Property NameValue
TranscriptId86919
TrackFilteredModels2
ProteinId86833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:21849..22938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86833gene_6215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86833mRNA_6215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6215CDS_6215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6215 ID=mRNA_6215|Name=jgi.p|Nanoce1779_2|86833|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
TAGCTGAAGAAAAGGACGGCCAAGCGAGATGGGAACTGGAAGAAGCACCC
CATTCCGACGCATGCATTGACCATTCCCAGCATCAGCAGCAGCCAAGCCC
ACATATCTAACCCATGCGCCGTCCCAACGAAGAGGAAGAAGAGGAGGGGG
GGGAGGCGGAAGGTAAGGGCGATTCTGCCCCGCTCCTTTTGCATGATGTG
CCCCTCCCCTCGCAGGCCTCGGAGGGAGGGGTAAGACCCCGGCGGCTCCC
TCTCCCTTCCACCTCCCTCGCCATCGACTCAAGTGCTCTTAATCCTTTAA
GACGGACATCCTTATCGCCCGCCTCGTCGAGGTACAGCTTTTATCAGGTG
TCACGAGGCCCCTCCTTCCTCTCCCCGCGTCGACGCTCCTTCCTCCAGCG
ACTGTGCTCCCTCCTCGGCTTTCTCTTCCTCGCGTTCCTCTCCTCCTTAT
TTTGGATGTCTGACGGTCAGTCTGCATCCGGCTGGGTAGGAAGGGTAATG
GTGCAGGGCGGTTGGTGGACACCAGCCGCCTACATTGCTGAGGTAGGGGG
GGAGGAAGGGAAGGAGGGAAATAGGAATTGCATGCCATGGAGGTATTGTG
AGGGCGGATGTGGATGCCACTTTACCCTCTCAAACGAATCCACTGGACTC
CTTCTTGATTGATTTACTTAATGATTCATTCATCCATTCATTCATCCATT
CACTCATTCCTTCACTCATTCCTTCACTCATTCCGTCACTCACTCTCACC
TTGCCCTCCCACTCACACCCACTGG
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protein sequence of jgi.p|Nanoce1779_2|86833

>mRNA_6215-protein ID=mRNA_6215-protein|Name=jgi.p|Nanoce1779_2|86833|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MRRPNEEEEEEGGEAEGKGDSAPLLLHDVPLPSQASEGGVRPRRLPLPST
SLAIDSSALNPLRRTSLSPASSRYSFYQVSRGPSFLSPRRRSFLQRLCSL
LGFLFLAFLSSLFWMSDGQSASGWVGRVMVQGGWWTPAAYIAEVGGEEGK
EGNRNCMPWRYCEGGCGCHFTLSNESTGLLLD*
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mRNA from alignment at scaffold_15:21849..22938+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6215 ID=mRNA_6215|Name=jgi.p|Nanoce1779_2|86833|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_15:21849..22938+ (Nannochloropsis oceanica)
TAGCTGAAGAAAAGGACGGCCAAGCGAGATGGGAACTGGAAGAAGGTACG
AAGAGCGTGAACGCAAGAGGTCAGGAAGGTGCATTCACTCTGCCTCCCCT
CCGCCTCTCCACAGCACCCCATTCCGACGCATGCATTGACCATTCCCAGC
ATCAGCAGCAGCCAAGCCCACATATCTAACCCATGCGCCGTCCCAACGAA
GAGGAAGAAGAGGAGGGGGGGGAGGCGGAAGGTAAGGGCGATTCTGCCCC
GCTCCTTTTGCATGATGTGCCCCTCCCCTCGCAGGCCTCGGAGGGAGGGG
TAAGACCCCGGCGGCTCCCTCTCCCTTCCACCTCCCTCGCCATCGACTCA
AGTGCTCTTAATCCTTTAAGACGGACATCCTTATCGCCCGCCTCGTCGAG
GTACAGCTTTTATCAGGTGTCACGAGGTGAGCGAGGCCAGAGAGAGGGGG
CAGGATGGTGCGGATGGGAAGGAGGGGAAGGGGAGAGGGGATTTATTCCT
CAGAAATGGCGAAACGAGAACAGCTTGTGAAGATGGAGAGAAAGATGTGC
ATTTTTGTGTCATCACCTAATACCTTCGCATTCTTATCTCCTCTTGTCTG
GGAATTAAACAAGAGGGAACCTTATTCGCCCTTTCTTGCTTCCTTTCCGT
GCCCTCCTCCCCCGCCCTCCAGGCCCCTCCTTCCTCTCCCCGCGTCGACG
CTCCTTCCTCCAGCGACTGTGCTCCCTCCTCGGCTTTCTCTTCCTCGCGT
TCCTCTCCTCCTTATTTTGGATGTCTGACGGTCAGTCTGCATCCGGCTGG
GTAGGAAGGGTAATGGTGCAGGGCGGTTGGTGGACACCAGCCGCCTACAT
TGCTGAGGTAGGGGGGGAGGAAGGGAAGGAGGGAAATAGGAATTGCATGC
CATGGAGGTATTGTGAGGGCGGATGTGGATGCCACTTTACCCTCTCAAAC
GAATCCACTGGACTCCTTCTTGATTGATTTACTTAATGATTCATTCATCC
ATTCATTCATCCATTCACTCATTCCTTCACTCATTCCTTCACTCATTCCG
TCACTCACTCTCACCTTGCCCTCCCACTCACACCCACTGG
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Coding sequence (CDS) from alignment at scaffold_15:21849..22938+

>mRNA_6215 ID=mRNA_6215|Name=jgi.p|Nanoce1779_2|86833|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_15:21849..22938+ (Nannochloropsis oceanica)
ATGCGCCGTCCCAACGAAGAGGAAGAAGAGGAGGGGGGGGAGGCGGAAGG
TAAGGGCGATTCTGCCCCGCTCCTTTTGCATGATGTGCCCCTCCCCTCGC
AGGCCTCGGAGGGAGGGGTAAGACCCCGGCGGCTCCCTCTCCCTTCCACC
TCCCTCGCCATCGACTCAAGTGCTCTTAATCCTTTAAGACGGACATCCTT
ATCGCCCGCCTCGTCGAGGTACAGCTTTTATCAGGTGTCACGAGGCCCCT
CCTTCCTCTCCCCGCGTCGACGCTCCTTCCTCCAGCGACTGTGCTCCCTC
CTCGGCTTTCTCTTCCTCGCGTTCCTCTCCTCCTTATTTTGGATGTCTGA
CGGTCAGTCTGCATCCGGCTGGGTAGGAAGGGTAATGGTGCAGGGCGGTT
GGTGGACACCAGCCGCCTACATTGCTGAGGTAGGGGGGGAGGAAGGGAAG
GAGGGAAATAGGAATTGCATGCCATGGAGGTATTGTGAGGGCGGATGTGG
ATGCCACTTTACCCTCTCAAACGAATCCACTGGACTCCTTCTTGATTGAA
TGCGCCGTCCCAACGAAGAGGAAGAAGAGGAGGGGGGGGAGGCGGAAGGT
AAGGGCGATTCTGCCCCGCTCCTTTTGCATGATGTGCCCCTCCCCTCGCA
GGCCTCGGAGGGAGGGGTAAGACCCCGGCGGCTCCCTCTCCCTTCCACCT
CCCTCGCCATCGACTCAAGTGCTCTTAATCCTTTAAGACGGACATCCTTA
TCGCCCGCCTCGTCGAGGTACAGCTTTTATCAGGTGTCACGAGGCCCCTC
CTTCCTCTCCCCGCGTCGACGCTCCTTCCTCCAGCGACTGTGCTCCCTCC
TCGGCTTTCTCTTCCTCGCGTTCCTCTCCTCCTTATTTTGGATGTCTGAC
GGTCAGTCTGCATCCGGCTGGGTAGGAAGGGTAATGGTGCAGGGCGGTTG
GTGGACACCAGCCGCCTACATTGCTGAGGTAGGGGGGGAGGAAGGGAAGG
AGGGAAATAGGAATTGCATGCCATGGAGGTATTGTGAGGGCGGATGTGGA
TGCCACTTTACCCTCTCAAACGAATCCACTGGACTCCTTCTTGATTGA
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Synonyms
Publications