jgi.p|Nanoce1779_2|594144, mRNA_6213 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594144
Unique Name	mRNA_6213
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1829
Alignment location	scaffold_15:16157..17985 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594230
Track	FilteredModels2
ProteinId	594144

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:16157..17985 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594144	gene_6213	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594144	mRNA_6213-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6213	CDS_6213	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:16157..17985+
coding sequence from alignment at scaffold_15:16157..17985+

mRNA sequence

>mRNA_6213 ID=mRNA_6213|Name=jgi.p|Nanoce1779_2|594144|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
ACAGTCTACACAAGCACGACCAAGAAAGCTCCTTGGCCGCCGTATTTGGG
TTTTTGCTGATCCTGCTGCGGAAATCCCTCTGCCTTTCGCCCACAAGCCA
TGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCAG
AGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTCG
TTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTCG
CTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCCA
GCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAGA
GGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCACT
TCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGATG
CTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCTG
GCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTAG
TGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTGC
AATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGGG
ATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTAG
GGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGAC
GAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCGA
TGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTAC
TCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCTC
CCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAGC
GCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTGT
TCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTGG
CTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTGG
AGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCGG
GCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGTA
ACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCAA
GAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGGA
AAGAGAATCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGAG
GCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGGC
GCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCTA
TTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGTG
GCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCCC
CACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACCC
AACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTTA
ACCTGGGATCAGCAATAGTAGAACGAGGAGGAAGAAAAGGGGCAGAGGAA
TGGCTGAAAAGAAGAGAAAGGGTTGGAGGAAGGAGACGTGAAGGAAACAT
CAACAGGCATCGGGCATGAAGTCTATATAGTGGTGTAAAGAAAGGAAAAC
AAACAATGAGCGAGACAAACGCTGTGCTG

protein sequence of jgi.p|Nanoce1779_2|594144

>mRNA_6213-protein ID=mRNA_6213-protein|Name=jgi.p|Nanoce1779_2|594144|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MSTSSSTSTKPNEPDPQSKCCPPPNTFSPLASTRLEIPLSSPLLTPRSTL
ASPRPVPTTFYRRPLPPATCIAFSSPEGRQLFTEALAAGGMNCFFPLIEH
FHTQSEPAYCGLGSLAMLLNALAIDPGRIWKGPWRWFDESLLDCCEPLEV
VQSQGISLVKANCLARCNGAKSRLRHGDTVSVEGFRDDVLRVTSSSVGFV
GEGKTNEGQQPQSRKEDEFMLCGYSRKLLGQTGDGHFSPVGGYHAAKDLV
LILDVARFKYPPHWVPLPLLHAALQPHDPATGKARGYLLLSQNRWSEALL
FTLDPDRFGDWPALRDWLLKLHRQEAQASIKGTGERGEGEGRRILVASKA
GFEAFVSAVPESVASLVTTYAYLKCILHDYPGSKSSSRSSGHSSSNSNVR
KENPQEAFIRPLVRAIEAYPAFALLPPHGKDSKAQEGKGSSEKESVCCPP
ISVDERHALVVFFLALVAWAGEELEEGETSSSSPTSSWKVENEALKREVT
QLKVRLQAIATERSSSLTWDQQ*

mRNA from alignment at scaffold_15:16157..17985+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6213 ID=mRNA_6213|Name=jgi.p|Nanoce1779_2|594144|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at scaffold_15:16157..17985+ (Nannochloropsis oceanica)
ACAGTCTACACAAGCACGACCAAGAAAGCTCCTTGGCCGCCGTATTTGGG
TTTTTGCTGATCCTGCTGCGGAAATCCCTCTGCCTTTCGCCCACAAGCCA
TGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCAG
AGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTCG
TTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTCG
CTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCCA
GCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAGA
GGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCACT
TCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGATG
CTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCTG
GCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTAG
TGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTGC
AATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGGG
ATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTAG
GGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGAC
GAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCGA
TGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTAC
TCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCTC
CCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAGC
GCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTGT
TCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTGG
CTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTGG
AGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCGG
GCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGTA
ACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCAA
GAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGGA
AAGAGAATCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGAG
GCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGGC
GCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCTA
TTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGTG
GCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCCC
CACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACCC
AACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTTA
ACCTGGGATCAGCAATAGTAGAACGAGGAGGAAGAAAAGGGGCAGAGGAA
TGGCTGAAAAGAAGAGAAAGGGTTGGAGGAAGGAGACGTGAAGGAAACAT
CAACAGGCATCGGGCATGAAGTCTATATAGTGGTGTAAAGAAAGGAAAAC
AAACAATGAGCGAGACAAACGCTGTGCTG

Coding sequence (CDS) from alignment at scaffold_15:16157..17985+

>mRNA_6213 ID=mRNA_6213|Name=jgi.p|Nanoce1779_2|594144|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_15:16157..17985+ (Nannochloropsis oceanica)
ATGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCA
GAGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTC
GTTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTC
GCTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCC
AGCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAG
AGGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCAC
TTCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGAT
GCTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCT
GGCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTA
GTGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTG
CAATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGG
GATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTA
GGGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGA
CGAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCG
ATGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTA
CTCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCT
CCCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAG
CGCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTG
TTCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTG
GCTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTG
GAGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCG
GGCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGT
AACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCA
AGAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGG
AAAGAGAATCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGA
GGCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGG
CGCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCT
ATTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGT
GGCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCC
CCACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACC
CAACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTT
AACCTGGGATCAGCAATAG

Synonyms

Publications