jgi.p|Nanoce1779_2|86442, mRNA_6208 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|86442
Unique NamemRNA_6208
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length662
Alignment locationscaffold_15:1..1025 +

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Properties
Property NameValue
TranscriptId86528
TrackFilteredModels2
ProteinId86442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:1..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86442gene_6208Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86442mRNA_6208-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6208CDS_6208Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6208 ID=mRNA_6208|Name=jgi.p|Nanoce1779_2|86442|organism=Nannochloropsis oceanica|type=mRNA|length=662bp
AAAGAGGCGGCATGGGAGACGGTGTCACTCCTCCTTGCTTCCTCCTTTCT
TCTCTTCCCAGGCAATACCTTTCTCTCCTTGGTGCTAAGCGTACACCGAC
ACGTAGCTAGCATTGCACCACTACCAACTCCACAAGTCAAAGATGCGGGT
TTCCTTCGCCCTTTTCGCCCTCGTGGCCGCAATCATCATGAGCATCTCTA
GCGCCTTCATGCCCCCCACCCCTCGCATGGCTCGCCAGGCCCGCACGGTG
ACGAAGCTGAGTCCCATGGACGTGATTCCCGCGGAGAGCTTTCAGGCGGC
CTCGGACGTGTTGATCGCGGCAAAGGACACGGACTTCGGCGGCTACACAG
GCCCCATTGCCGGTCTCATTACTCTCGGCGCCCTTATCATCGTGCTCGCC
CCCCCTCTTACCTCCCAGGCTAAGGAGGAGTAAGGGAGGTGAAGGTTAAG
AAGGACCAAAAAGGCACATTGAAGGAGTAAGGTGAGAGGGGCAGCGCGCT
GCTGCCCAGGGGGCGTTGAGAAGGGACATTGCGAAAACGAGGACGGCAAG
GGTATCACCATGGAAGAAAGGAGATGCAGGAGTAGTAGCAAACGCGTGTG
GGGGTTGGTAGCGGGGGGTTGTCTTGTTCTGGGTGTCTTTATCGGAAGCG
AAAGGGTGTCAT
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protein sequence of jgi.p|Nanoce1779_2|86442

>mRNA_6208-protein ID=mRNA_6208-protein|Name=jgi.p|Nanoce1779_2|86442|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MRVSFALFALVAAIIMSISSAFMPPTPRMARQARTVTKLSPMDVIPAESF
QAASDVLIAAKDTDFGGYTGPIAGLITLGALIIVLAPPLTSQAKEE*
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mRNA from alignment at scaffold_15:1..1025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6208 ID=mRNA_6208|Name=jgi.p|Nanoce1779_2|86442|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_15:1..1025+ (Nannochloropsis oceanica)
AAAGAGGCGGCATGGGAGACGGTGTCACTCCTCCTTGCTTCCTCCTTTCT
TCTCTTCCCAGGCAATACCTTTCTCTCCTTGGTGCTAAGCGTACACCGAC
ACGTAGCTAGCATTGCGCAAGTCCTACTGATGAGCATTACTCCCATGAAG
AATCATCTCATTGCTACAAAAGCTTGCCGCTTCGAGTGATCCACCGCTAC
TGATATGACTTCGACAAACTGACCCTCAACATACACCCCCCCACCCACCG
ACCCACCCACAGACCACTACCAACTCCACAAGTCAAAGATGCGGGTTTCC
TTCGCCCTTTTCGCCCTCGTGGCCGCAATCATCATGAGCATCTCTAGCGC
CTTCATGCCCCCCACCCCTCGCATGGCTCGCCAGGTACGCCGGGAGGCAA
GCATGAAAGATGACCTTGGCGACGTGTCGTGTGTGTGTGTTTGTCCCTTC
CACGTCCCTCATTCGTCTGTTCTCCCTTAATTATCTATGCCTTGCACGTC
TAGGCACCTACTCCTACGCCAACAGATTTCTGATCCACCCTCGCTAGTTG
ACGCCCTTTCCTCTTATCACCCTGTCCCTCTTTTTCCATCCTCGCCCACA
GGCCCGCACGGTGACGAAGCTGAGTCCCATGGACGTGATTCCCGCGGAGA
GCTTTCAGGCGGCCTCGGACGTGTTGATCGCGGCAAAGGACACGGACTTC
GGCGGCTACACAGGCCCCATTGCCGGTCTCATTACTCTCGGCGCCCTTAT
CATCGTGCTCGCCCCCCCTCTTACCTCCCAGGCTAAGGAGGAGTAAGGGA
GGTGAAGGTTAAGAAGGACCAAAAAGGCACATTGAAGGAGTAAGGTGAGA
GGGGCAGCGCGCTGCTGCCCAGGGGGCGTTGAGAAGGGACATTGCGAAAA
CGAGGACGGCAAGGGTATCACCATGGAAGAAAGGAGATGCAGGAGTAGTA
GCAAACGCGTGTGGGGGTTGGTAGCGGGGGGTTGTCTTGTTCTGGGTGTC
TTTATCGGAAGCGAAAGGGTGTCAT
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Coding sequence (CDS) from alignment at scaffold_15:1..1025+

>mRNA_6208 ID=mRNA_6208|Name=jgi.p|Nanoce1779_2|86442|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_15:1..1025+ (Nannochloropsis oceanica)
ATGCGGGTTTCCTTCGCCCTTTTCGCCCTCGTGGCCGCAATCATCATGAG
CATCTCTAGCGCCTTCATGCCCCCCACCCCTCGCATGGCTCGCCAGGCCC
GCACGGTGACGAAGCTGAGTCCCATGGACGTGATTCCCGCGGAGAGCTTT
CAGGCGGCCTCGGACGTGTTGATCGCGGCAAAGGACACGGACTTCGGCGG
CTACACAGGCCCCATTGCCGGTCTCATTACTCTCGGCGCCCTTATCATCG
TGCTCGCCCCCCCTCTTACCTCCCAGGCTAAGGAGGAGTAAATGCGGGTT
TCCTTCGCCCTTTTCGCCCTCGTGGCCGCAATCATCATGAGCATCTCTAG
CGCCTTCATGCCCCCCACCCCTCGCATGGCTCGCCAGGCCCGCACGGTGA
CGAAGCTGAGTCCCATGGACGTGATTCCCGCGGAGAGCTTTCAGGCGGCC
TCGGACGTGTTGATCGCGGCAAAGGACACGGACTTCGGCGGCTACACAGG
CCCCATTGCCGGTCTCATTACTCTCGGCGCCCTTATCATCGTGCTCGCCC
CCCCTCTTACCTCCCAGGCTAAGGAGGAGTAA
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Synonyms
Publications