jgi.p|Nanoce1779_2|594130, mRNA_6207 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594130
Unique NamemRNA_6207
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length967
Alignment locationscaffold_14:813571..814537 -

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Properties
Property NameValue
TranscriptId594216
TrackFilteredModels2
ProteinId594130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:813571..814537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594130gene_6207Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594130mRNA_6207-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6207CDS_6207Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6207 ID=mRNA_6207|Name=jgi.p|Nanoce1779_2|594130|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
GAAGGAGACACAGAGGGGCCCCTGGTACCAGCTTCGACCACCTTAAAAGC
TTTAAAATCGGGGTCAAGAATCAAGTCGCATACTCCACCGCAGCAGAAGC
ACTGATTGGTTGCCGTGTTCCAGTTGAAGAAAAACGGAGTTGGCTCATTC
CCATTGATGGAGCAGTATTCGAAGCACTCAGTCGGAGTGTTAATCTCCAC
AGGCGCCAGCTGCCGATGCTCGCCATCAATATCCCTGTGCGAGTCCAGTC
CCTTCCTATCATAAAATTCCGACAAACGGCGACCTTGACCAAAGGGCGCC
AGTTGTCCTGCCTGCAAGCATCGCTGCCCCTCACCAAAAAGTTGGAAGGG
TGTTGCGGGGTTAACGCTCGGGGCCAGAGTCGGTGCGCACGTGACAGGCA
TCGAGGAAGCGTGCTTGCCCAACTTGTCGCCAGGATATCGCACACGCAAG
ACTACGGGCTCGGCCAGTGGCAAAGCACAGTAAGTGGACAGGTCCGTGGC
GTTGACCAGGTACGCCAGGCCTGTGACATTCAGCATCTCAGGGGCACAGT
CATCAGCGATCACCATGGCCTTAAACACGCGCTTGGAGCTTCTTTTGAAG
TCAAAGTCTGTCCAGTAGATTGCCGTTGTCCCATCTGGATTCTGGATGGT
CTGCGCGGGGGAGACCATGAGAGACGGGCGGGCCTTGGGCTTGACCACAG
ACAAGCCAGCCGGCAGCTCCATCTTGAAATTGACGCCTTGTACAGCCTCT
TTGCTTCGAACCTTAACGATGATCTTGGCTTTTTGTTGGCCTGCCAGGAT
CCTATGCTTTGCATTAGGTCGCGCCTTGGCGCCCAGAATCAGACGTGGAC
AGTCCTGGGCAACGGCAACCGGCGCCCAGGCGCCGCCGAGAACAGCAAGC
ACGGGGAAGATAAGGGGCAGGTACATGGTCTCTGATTGTATGTAGACTTA
TGAGACGGCGTGTATCT
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protein sequence of jgi.p|Nanoce1779_2|594130

>mRNA_6207-protein ID=mRNA_6207-protein|Name=jgi.p|Nanoce1779_2|594130|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLAINIPVRVQSLPIIKFRQTATLTKGRQLSCLQASLPLTKKLEGCCGVN
ARGQSRCARDRHRGSVLAQLVARISHTQDYGLGQWQSTVSGQVRGVDQVR
QACDIQHLRGTVISDHHGLKHALGASFEVKVCPVDCRCPIWILDGLRGGD
HERRAGLGLDHRQASRQLHLEIDALYSLFASNLNDDLGFLLACQDPMLCI
RSRLGAQNQTWTVLGNGNRRPGAAENSKHGEDKGQVHGL*
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mRNA from alignment at scaffold_14:813571..814537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6207 ID=mRNA_6207|Name=jgi.p|Nanoce1779_2|594130|organism=Nannochloropsis oceanica|type=mRNA|length=967bp|location=Sequence derived from alignment at scaffold_14:813571..814537- (Nannochloropsis oceanica)
GAAGGAGACACAGAGGGGCCCCTGGTACCAGCTTCGACCACCTTAAAAGC
TTTAAAATCGGGGTCAAGAATCAAGTCGCATACTCCACCGCAGCAGAAGC
ACTGATTGGTTGCCGTGTTCCAGTTGAAGAAAAACGGAGTTGGCTCATTC
CCATTGATGGAGCAGTATTCGAAGCACTCAGTCGGAGTGTTAATCTCCAC
AGGCGCCAGCTGCCGATGCTCGCCATCAATATCCCTGTGCGAGTCCAGTC
CCTTCCTATCATAAAATTCCGACAAACGGCGACCTTGACCAAAGGGCGCC
AGTTGTCCTGCCTGCAAGCATCGCTGCCCCTCACCAAAAAGTTGGAAGGG
TGTTGCGGGGTTAACGCTCGGGGCCAGAGTCGGTGCGCACGTGACAGGCA
TCGAGGAAGCGTGCTTGCCCAACTTGTCGCCAGGATATCGCACACGCAAG
ACTACGGGCTCGGCCAGTGGCAAAGCACAGTAAGTGGACAGGTCCGTGGC
GTTGACCAGGTACGCCAGGCCTGTGACATTCAGCATCTCAGGGGCACAGT
CATCAGCGATCACCATGGCCTTAAACACGCGCTTGGAGCTTCTTTTGAAG
TCAAAGTCTGTCCAGTAGATTGCCGTTGTCCCATCTGGATTCTGGATGGT
CTGCGCGGGGGAGACCATGAGAGACGGGCGGGCCTTGGGCTTGACCACAG
ACAAGCCAGCCGGCAGCTCCATCTTGAAATTGACGCCTTGTACAGCCTCT
TTGCTTCGAACCTTAACGATGATCTTGGCTTTTTGTTGGCCTGCCAGGAT
CCTATGCTTTGCATTAGGTCGCGCCTTGGCGCCCAGAATCAGACGTGGAC
AGTCCTGGGCAACGGCAACCGGCGCCCAGGCGCCGCCGAGAACAGCAAGC
ACGGGGAAGATAAGGGGCAGGTACATGGTCTCTGATTGTATGTAGACTTA
TGAGACGGCGTGTATCT
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Coding sequence (CDS) from alignment at scaffold_14:813571..814537-

>mRNA_6207 ID=mRNA_6207|Name=jgi.p|Nanoce1779_2|594130|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_14:813571..814537- (Nannochloropsis oceanica)
ATGCTCGCCATCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAA
ATTCCGACAAACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGC
AAGCATCGCTGCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAAC
GCTCGGGGCCAGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCT
TGCCCAACTTGTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCC
AGTGGCAAAGCACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGC
CAGGCCTGTGACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCA
TGGCCTTAAACACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAG
TAGATTGCCGTTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGAC
CATGAGAGACGGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCA
GCTCCATCTTGAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTA
ACGATGATCTTGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATT
AGGTCGCGCCTTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGG
CAACCGGCGCCCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGG
GGCAGGTACATGGTCTCTGA
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Synonyms
Publications