jgi.p|Nanoce1779_2|543698, mRNA_6206 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|543698
Unique Name	mRNA_6206
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1668
Alignment location	scaffold_14:809793..811460 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	543784
Track	FilteredModels2
ProteinId	543698

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:809793..811460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543698	gene_6206	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543698	mRNA_6206-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6206	CDS_6206	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:809793..811460+
coding sequence from alignment at scaffold_14:809793..811460+

mRNA sequence

>mRNA_6206 ID=mRNA_6206|Name=jgi.p|Nanoce1779_2|543698|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
TCCGACGGCAACGCCCACAACAACTCCGACGGCCACACCGACTGCAACTC
CGACGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGAC
GGCCACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGG
CCACACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCA
ACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCCAC
ACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTC
CAACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCGAC
GGCCACACCGACTGCGACTCCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTG
CAAGTCCGACCCCCTTCCAGACTGGGCCAGACCGATAAATATCAAGGGGG
AACATTGATTGACGACTCTCTTCAGATCTCTTCGCCGCCACCAATGCTGC
TCGTGCACTCCTTCTCACTTTCGGAACCTTTGTCAAAGATGAAACTGGAT
GTGTGATAGTGCTACTTTTTTTCCATGTCGTCGTTGTCACCCTTGAGCAG
TACGTCTGTATCTCCCTCAATATAATCTTATCTTCACTTCAGCATACATT
GGCTCTGGAAAAACATCACCTTCGGAGTTCCCGTTGCCCTGGAAACTCGC
CTAAAGATTGACCACTTCATCGATCCTTCAACGAGGAGAGGCATCGGTCA
CATGTTTGGCACGGACTATACAGAAAGTTATTTAAGTTTTTTTTTGGGGG
GGTGTTTCTTCCCTATTTCTCGAATACATATGATCTTGAAATTGTCTCTT
CACACCGAACAAATAGATGCAAACACACACATACATATGTGGACACTTTC
AGTACACAAAAAACGGAATATTTATGTTTCCCCCCCAAAAAAGAAGTAAT
ATCAGACGAAACAAATGA

protein sequence of jgi.p|Nanoce1779_2|543698

>mRNA_6206-protein ID=mRNA_6206-protein|Name=jgi.p|Nanoce1779_2|543698|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
SDGNAHNNSDGHTDCNSDGHSIGHTDGHTDGNSDGHTDCNSDGHTDCNSD
GHTDGHTDGHTDCNSDGHTDCNSDGHTDCNSDGHTDGHTDGHTDCNSDGH
TDCNSNGHTDCNSDGHTDGNSDGHTDCNSDGHTDGNSDGHTDCNSDGHTD
CNSDGHTDCNSDGHTDGHTDGHTDCNSDGHTDCNSDGHTDCNSDGHTDGH
TDGHTDCNSDGHTDCNSNGHTDCNSDGHTDGNSDGHTDCNSDGHTDGNSD
GHTDCDSDGHTDCNSDGHTDCNSDGHTDCNSDGHTDGHTDGHTDCNSDGH
TDCNSNGHTDCNSDGHTDGNSDGHTDCNSDGHTDGNSDGHTDCDSDGHTD
CNSDGHTDCNSDGHTDCKSDPLPDWARPINIKGEH*

mRNA from alignment at scaffold_14:809793..811460+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6206 ID=mRNA_6206|Name=jgi.p|Nanoce1779_2|543698|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp|location=Sequence derived from alignment at scaffold_14:809793..811460+ (Nannochloropsis oceanica)
TCCGACGGCAACGCCCACAACAACTCCGACGGCCACACCGACTGCAACTC
CGACGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGAC
GGCCACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGG
CCACACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCA
ACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCCAC
ACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTC
CAACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCGAC
GGCCACACCGACTGCGACTCCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTG
CAAGTCCGACCCCCTTCCAGACTGGGCCAGACCGATAAATATCAAGGGGG
AACATTGATTGACGACTCTCTTCAGATCTCTTCGCCGCCACCAATGCTGC
TCGTGCACTCCTTCTCACTTTCGGAACCTTTGTCAAAGATGAAACTGGAT
GTGTGATAGTGCTACTTTTTTTCCATGTCGTCGTTGTCACCCTTGAGCAG
TACGTCTGTATCTCCCTCAATATAATCTTATCTTCACTTCAGCATACATT
GGCTCTGGAAAAACATCACCTTCGGAGTTCCCGTTGCCCTGGAAACTCGC
CTAAAGATTGACCACTTCATCGATCCTTCAACGAGGAGAGGCATCGGTCA
CATGTTTGGCACGGACTATACAGAAAGTTATTTAAGTTTTTTTTTGGGGG
GGTGTTTCTTCCCTATTTCTCGAATACATATGATCTTGAAATTGTCTCTT
CACACCGAACAAATAGATGCAAACACACACATACATATGTGGACACTTTC
AGTACACAAAAAACGGAATATTTATGTTTCCCCCCCAAAAAAGAAGTAAT
ATCAGACGAAACAAATGA

Coding sequence (CDS) from alignment at scaffold_14:809793..811460+

>mRNA_6206 ID=mRNA_6206|Name=jgi.p|Nanoce1779_2|543698|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_14:809793..811460+ (Nannochloropsis oceanica)
TCCGACGGCAACGCCCACAACAACTCCGACGGCCACACCGACTGCAACTC
CGACGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGAC
GGCCACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGG
CCACACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCA
ACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCCAC
ACCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTC
CAACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCG
ACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACTCCGAC
GGCCACACCGACTGCGACTCCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACTGCAACTCCAACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCGAC
TGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTG
CAAGTCCGACCCCCTTCCAGACTGGGCCAGACCGATAAATATCAAGGGGG
AACATTGA

Synonyms

Publications