jgi.p|Nanoce1779_2|594128, mRNA_6205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594128
Unique NamemRNA_6205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length992
Alignment locationscaffold_14:808664..809655 -

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Properties
Property NameValue
TranscriptId594214
TrackFilteredModels2
ProteinId594128
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:808664..809655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594128gene_6205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594128mRNA_6205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6205CDS_6205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6205 ID=mRNA_6205|Name=jgi.p|Nanoce1779_2|594128|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
CGAGGGCGATGCCGACGGGCTCAGGGAAGGAGACACAGAGGGGCCCCTGG
TACCAGCTTCGACCACCTTAAAAGCTTTAAAATCGGGGTCAAGAATCAAG
TCGCATACTCCACCGCAGCAGAAGCACTGATTGGTTGCCGTGTTCCAGTT
GAAGAAAAACGGAGTTGGCTCATTCCCATTGATGGAGCAGTATTCGAAGC
ACTCAGTCGGAGTGTTAATCTCCACAGGCGCCAGCTGCCGATGCTCGCCA
TCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAAATTCCGACAA
ACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGCAAGCATCGCT
GCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAACGCTCGGGGCC
AGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCTTGCCCAACTT
GTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCCAGTGGCAAAG
CACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGCCAGGCCTGTG
ACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCATGGCCTTAAA
CACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAGTAGATTGCCG
TTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGACAATGAGGGAC
GGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCAGCTCCATCTT
GAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTAACGATGATCT
TGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATTAGGTCGCGCC
TTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGGCAACCGGCGC
CCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGGGGCAGGTACA
TGGTCTCTGATTGTATGTAGACTAATGAGACGGCGTGTATCT
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protein sequence of jgi.p|Nanoce1779_2|594128

>mRNA_6205-protein ID=mRNA_6205-protein|Name=jgi.p|Nanoce1779_2|594128|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLAINIPVRVQSLPIIKFRQTATLTKGRQLSCLQASLPLTKKLEGCCGVN
ARGQSRCARDRHRGSVLAQLVARISHTQDYGLGQWQSTVSGQVRGVDQVR
QACDIQHLRGTVISDHHGLKHALGASFEVKVCPVDCRCPIWILDGLRGGD
NEGRAGLGLDHRQASRQLHLEIDALYSLFASNLNDDLGFLLACQDPMLCI
RSRLGAQNQTWTVLGNGNRRPGAAENSKHGEDKGQVHGL*
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mRNA from alignment at scaffold_14:808664..809655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6205 ID=mRNA_6205|Name=jgi.p|Nanoce1779_2|594128|organism=Nannochloropsis oceanica|type=mRNA|length=992bp|location=Sequence derived from alignment at scaffold_14:808664..809655- (Nannochloropsis oceanica)
CGAGGGCGATGCCGACGGGCTCAGGGAAGGAGACACAGAGGGGCCCCTGG
TACCAGCTTCGACCACCTTAAAAGCTTTAAAATCGGGGTCAAGAATCAAG
TCGCATACTCCACCGCAGCAGAAGCACTGATTGGTTGCCGTGTTCCAGTT
GAAGAAAAACGGAGTTGGCTCATTCCCATTGATGGAGCAGTATTCGAAGC
ACTCAGTCGGAGTGTTAATCTCCACAGGCGCCAGCTGCCGATGCTCGCCA
TCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAAATTCCGACAA
ACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGCAAGCATCGCT
GCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAACGCTCGGGGCC
AGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCTTGCCCAACTT
GTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCCAGTGGCAAAG
CACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGCCAGGCCTGTG
ACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCATGGCCTTAAA
CACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAGTAGATTGCCG
TTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGACAATGAGGGAC
GGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCAGCTCCATCTT
GAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTAACGATGATCT
TGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATTAGGTCGCGCC
TTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGGCAACCGGCGC
CCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGGGGCAGGTACA
TGGTCTCTGATTGTATGTAGACTAATGAGACGGCGTGTATCT
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Coding sequence (CDS) from alignment at scaffold_14:808664..809655-

>mRNA_6205 ID=mRNA_6205|Name=jgi.p|Nanoce1779_2|594128|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_14:808664..809655- (Nannochloropsis oceanica)
ATGCTCGCCATCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAA
ATTCCGACAAACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGC
AAGCATCGCTGCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAAC
GCTCGGGGCCAGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCT
TGCCCAACTTGTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCC
AGTGGCAAAGCACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGC
CAGGCCTGTGACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCA
TGGCCTTAAACACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAG
TAGATTGCCGTTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGAC
AATGAGGGACGGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCA
GCTCCATCTTGAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTA
ACGATGATCTTGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATT
AGGTCGCGCCTTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGG
CAACCGGCGCCCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGG
GGCAGGTACATGGTCTCTGA
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Synonyms
Publications