jgi.p|Nanoce1779_2|84669, mRNA_6203 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|84669
Unique NamemRNA_6203
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1067
Alignment locationscaffold_14:795170..796994 +

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Properties
Property NameValue
TranscriptId84755
TrackFilteredModels2
ProteinId84669
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:795170..796994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84669gene_6203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84669mRNA_6203-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6203CDS_6203Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6203 ID=mRNA_6203|Name=jgi.p|Nanoce1779_2|84669|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp
TTTTGGGCATGCGGTCCAAATATGAAGAAGGCAGATTTATGCCATTTCCT
GAAATTTACATTTTGCACAGGGCGAAGCAAACGCGGGCATGTGCCAGGAT
GGGTGATATGGCAGAACGAACGGATAGATGTTGCATTACTGCTCCCAACG
TCAGCGTTTTGTCTTCATCCTTTCTGAGGCCCTTTTCTTCCTTCCTTTTG
AACCGACAAACAATAGGTGCACGCGCTTGGAGCTAGAATGCAAGCCGCAG
GAACGTGGACGTGGTCGGCCCAGGGGGAGCGTTACTGTCGTGGACAGCGA
AACCTTCTTGTGCCAGCCGTCCTGGTCCTCGTCGACCACGTCTCACTTGG
GCCCGCGTGGAAGAGGCGATGGAGGAGAAGGACGAGGAAGGGCAAAAAAG
AAAGAAGAAAAAAAGAAGCATTCCTTGCCACGGTTACCTAGGAGAAACGA
GGGGAAATGCTCCAGCCAGGATGGGGGCTTTCCTCTTCAGCACTTTCCCG
GGAACGGCCTTCACTTGAACACAGCAGCAACGGCAGTAACAGGAGCAACA
GCAGCAACGGCAGCAGTAGCAGTAGCAGCAGCAGCAGAAGCTGCAAGAGT
AGCAGCAGAAGAAGCATACACAAAAGCCGCAGCAGCAGCAAAAACTTCAG
CAGCAGCAGCAGCAGCAGCGAGCAGCAGTGGTATCGCGATGTTCAACCCG
AGCTCGTGCATCCGATGCCTTGGTTTCTTTTGACTATACGAGCATCGCTG
AGGGGGGAGAGCTTAGAAAACGACAAGGGGGGGAGGGGGAGGAAGGGACG
GAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGATGGGAGAGGGTCAAGAA
GATGAAGAGGGAGATGGAGGAAGGGGAGGAGGACGGGAATGAGGTGGAGG
ATGATGTCAAGGAGGAGCGTGAGGAGGGGGGGAATAAGGAAGGGGAGAAG
GAGGAGGAAGAGTGTGAGAGAGAATATAAAATCATGAGAAATATCACGGA
TGGGGTGAGCGATTGCAAAGATAATAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGA
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protein sequence of jgi.p|Nanoce1779_2|84669

>mRNA_6203-protein ID=mRNA_6203-protein|Name=jgi.p|Nanoce1779_2|84669|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MLHYCSQRQRFVFILSEALFFLPFEPTNNRCTRLELECKPQERGRGRPRG
SVTVVDSETFLCQPSWSSSTTSHLGPRGRGDGGEGRGRAKKKEEKKKHSL
PRLPRRNEGKCSSQDGGFPLQHFPGNGLHLNTAATAVTGATAATAAVAVA
AAAEAARVAAEEAYTKAAAAAKTSAAAAAAASSSGIAMFNPSSCIRCLGF
F*
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mRNA from alignment at scaffold_14:795170..796994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6203 ID=mRNA_6203|Name=jgi.p|Nanoce1779_2|84669|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_14:795170..796994+ (Nannochloropsis oceanica)
TTTTGGGCATGCGGTCCAAATATGAAGAAGGCAGATTTATGCCATTTCCT
GAAATTTACATTTTGCACAGGGCGAAGCAAACGCGGGCATGTGCCAGGAT
GGGTGATATGGCAGAACGAACGGATAGATGTTGCATTACTGCTCCCAACG
TCAGCGTTTTGTCTTCATCCTTTCTGAGGCCCTTTTCTTCCTTCCTTTTG
AACCGACAAACAATAGGTGCACGCGCTTGGAGCTAGAATGCAAGCCGCAG
GAACGTGGACGTGGTCGGCCCAGGGGGAGCGTTACTGTCGGTGAGACGGG
CGGGCGGGAGGGGCGAAAAGGGCGGAGGAAAATGATGTTGATCTTGCCTT
CAGGAAATATGTTCCTCTTTTAGCAATAGAAGCAGATTTGACGTAGGACG
AAAGAGGGTGACAGCGCAGTGCTTGTTACAAGCTTATTATGTAGCTGTGT
GTGGATGTGTGAGTAGTGGCTCGAATTCGAGCTGAGGAAGAAGAAGTTAT
TGAACAAGAAAGAGGAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGCAGAGGGGCGAAGAGAAGATAAAGGCGAGTGCTCAATAGG
TCACATACGACACCTCAAACTCTTACAGATACACATATTTCTTCTGCCCT
GCCTCCTTTTTTAAAAATCCCATCCTTCTCACTACCAGTGGACAGCGAAA
CCTTCTTGTGCCAGCCGTCCTGGTCCTCGTCGACCACGTCTCACTTGGGC
CCGCGTGGAAGAGGCGATGGAGGAGAAGGACGAGGAAGGGCAAAAAAGAA
AGAAGAAAAAAAGAAGCATTCCTTGCCACGGTTACCTAGGAGAAACGAGG
TAAGGGGCCTGTGAGGAACGGTGTGGAGAGAGCAGCAAGTCTGGACGGAT
GAAGGGGATGATCCCCTCTTACCCCCCCTCCCTCCCTCCCCCTTTCCCTC
TTTCCCTTGACCATGCGATCTAAAGGGGAAATGCTCCAGCCAGGATGGGG
GCTTTCCTCTTCAGCACTTTCCCGGGAACGGCCTTCACTTGAACACAGCA
GCAACGGCAGTAACAGGAGCAACAGCAGCAACGGCAGCAGTAGCAGTAGC
AGCAGCAGCAGAAGCTGCAAGAGTAGCAGCAGAAGAAGCATACACAAAAG
CCGCAGCAGCAGCAAAAACTTCAGCAGCAGCAGCAGCAGCAGCGAGCAGC
AGTGGTATCGCGATGTTCAACCCGAGCTCGTGCATCCGATGTAAACCACC
CCCCTCCCTCCCTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCT
CTTCCGGCATTGCGATTCCCTTTTTTTCCTCCTTTATCGCAAAGCTTCAT
TTCAAACTTGAACACCTCGTCCGTTCCTCCCTCTCCCCCATCCATCCCCT
CCCGCACTCGTCCCGACTCTTCATGAAAGTCAACCACTTTCCTCCCTCCT
TCCCTCCCTCCCTCCCTCTCCCAGGCCTTGGTTTCTTTTGACTATACGAG
CATCGCTGAGGGGGGAGAGCTTAGAAAACGACAAGGGGGGGAGGGGGAGG
AAGGGACGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGATGGGAGAGG
GTCAAGAAGATGAAGAGGGAGATGGAGGAAGGGGAGGAGGACGGGAATGA
GGTGGAGGATGATGTCAAGGAGGAGCGTGAGGAGGGGGGGAATAAGGAAG
GGGAGAAGGAGGAGGAAGAGTGTGAGAGAGAATATAAAATCATGAGAAAT
ATCACGGATGGGGTGAGCGATTGCAAAGATAATAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGA
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Coding sequence (CDS) from alignment at scaffold_14:795170..796994+

>mRNA_6203 ID=mRNA_6203|Name=jgi.p|Nanoce1779_2|84669|organism=Nannochloropsis oceanica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_14:795170..796994+ (Nannochloropsis oceanica)
ATGTTGCATTACTGCTCCCAACGTCAGCGTTTTGTCTTCATCCTTTCTGA
GGCCCTTTTCTTCCTTCCTTTTGAACCGACAAACAATAGGTGCACGCGCT
TGGAGCTAGAATGCAAGCCGCAGGAACGTGGACGTGGTCGGCCCAGGGGG
AGCGTTACTGTCGTGGACAGCGAAACCTTCTTGTGCCAGCCGTCCTGGTC
CTCGTCGACCACGTCTCACTTGGGCCCGCGTGGAAGAGGCGATGGAGGAG
AAGGACGAGGAAGGGCAAAAAAGAAAGAAGAAAAAAAGAAGCATTCCTTG
CCACGGTTACCTAGGAGAAACGAGGGGAAATGCTCCAGCCAGGATGGGGG
CTTTCCTCTTCAGCACTTTCCCGGGAACGGCCTTCACTTGAACACAGCAG
CAACGGCAGTAACAGGAGCAACAGCAGCAACGGCAGCAGTAGCAGTAGCA
GCAGCAGCAGAAGCTGCAAGAGTAGCAGCAGAAGAAGCATACACAAAAGC
CGCAGCAGCAGCAAAAACTTCAGCAGCAGCAGCAGCAGCAGCGAGCAGCA
GTGGTATCGCGATGTTCAACCCGAGCTCGTGCATCCGATGCCTTGGTTTC
TTTTGAATGTTGCATTACTGCTCCCAACGTCAGCGTTTTGTCTTCATCCT
TTCTGAGGCCCTTTTCTTCCTTCCTTTTGAACCGACAAACAATAGGTGCA
CGCGCTTGGAGCTAGAATGCAAGCCGCAGGAACGTGGACGTGGTCGGCCC
AGGGGGAGCGTTACTGTCGTGGACAGCGAAACCTTCTTGTGCCAGCCGTC
CTGGTCCTCGTCGACCACGTCTCACTTGGGCCCGCGTGGAAGAGGCGATG
GAGGAGAAGGACGAGGAAGGGCAAAAAAGAAAGAAGAAAAAAAGAAGCAT
TCCTTGCCACGGTTACCTAGGAGAAACGAGGGGAAATGCTCCAGCCAGGA
TGGGGGCTTTCCTCTTCAGCACTTTCCCGGGAACGGCCTTCACTTGAACA
CAGCAGCAACGGCAGTAACAGGAGCAACAGCAGCAACGGCAGCAGTAGCA
GTAGCAGCAGCAGCAGAAGCTGCAAGAGTAGCAGCAGAAGAAGCATACAC
AAAAGCCGCAGCAGCAGCAAAAACTTCAGCAGCAGCAGCAGCAGCAGCGA
GCAGCAGTGGTATCGCGATGTTCAACCCGAGCTCGTGCATCCGATGCCTT
GGTTTCTTTTGAATGTTGCATTACTGCTCCCAACGTCAGCGTTTTGTCTT
CATCCTTTCTGAGGCCCTTTTCTTCCTTCCTTTTGAACCGACAAACAATA
GGTGCACGCGCTTGGAGCTAGAATGCAAGCCGCAGGAACGTGGACGTGGT
CGGCCCAGGGGGAGCGTTACTGTCGTGGACAGCGAAACCTTCTTGTGCCA
GCCGTCCTGGTCCTCGTCGACCACGTCTCACTTGGGCCCGCGTGGAAGAG
GCGATGGAGGAGAAGGACGAGGAAGGGCAAAAAAGAAAGAAGAAAAAAAG
AAGCATTCCTTGCCACGGTTACCTAGGAGAAACGAGGGGAAATGCTCCAG
CCAGGATGGGGGCTTTCCTCTTCAGCACTTTCCCGGGAACGGCCTTCACT
TGAACACAGCAGCAACGGCAGTAACAGGAGCAACAGCAGCAACGGCAGCA
GTAGCAGTAGCAGCAGCAGCAGAAGCTGCAAGAGTAGCAGCAGAAGAAGC
ATACACAAAAGCCGCAGCAGCAGCAAAAACTTCAGCAGCAGCAGCAGCAG
CAGCGAGCAGCAGTGGTATCGCGATGTTCAACCCGAGCTCGTGCATCCGA
TGCCTTGGTTTCTTTTGAATGTTGCATTACTGCTCCCAACGTCAGCGTTT
TGTCTTCATCCTTTCTGAGGCCCTTTTCTTCCTTCCTTTTGAACCGACAA
ACAATAGGTGCACGCGCTTGGAGCTAGAATGCAAGCCGCAGGAACGTGGA
CGTGGTCGGCCCAGGGGGAGCGTTACTGTCGTGGACAGCGAAACCTTCTT
GTGCCAGCCGTCCTGGTCCTCGTCGACCACGTCTCACTTGGGCCCGCGTG
GAAGAGGCGATGGAGGAGAAGGACGAGGAAGGGCAAAAAAGAAAGAAGAA
AAAAAGAAGCATTCCTTGCCACGGTTACCTAGGAGAAACGAGGGGAAATG
CTCCAGCCAGGATGGGGGCTTTCCTCTTCAGCACTTTCCCGGGAACGGCC
TTCACTTGAACACAGCAGCAACGGCAGTAACAGGAGCAACAGCAGCAACG
GCAGCAGTAGCAGTAGCAGCAGCAGCAGAAGCTGCAAGAGTAGCAGCAGA
AGAAGCATACACAAAAGCCGCAGCAGCAGCAAAAACTTCAGCAGCAGCAG
CAGCAGCAGCGAGCAGCAGTGGTATCGCGATGTTCAACCCGAGCTCGTGC
ATCCGATGCCTTGGTTTCTTTTGA
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Synonyms
Publications