jgi.p|Nanoce1779_2|566972, mRNA_6202 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566972
Unique NamemRNA_6202
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length405
Alignment locationscaffold_14:792221..792979 -

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Properties
Property NameValue
TranscriptId567058
TrackFilteredModels2
ProteinId566972
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:792221..792979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566972gene_6202Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566972mRNA_6202-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6202CDS_6202Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6202 ID=mRNA_6202|Name=jgi.p|Nanoce1779_2|566972|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGGAGCCCTCTCACATGGATATAGCGCCGATGATGGTAGACGACGACGA
TGAGGATGATATACTCCCAGCCGCCTCCCTCGCTCCAGCAACGACTCTCC
TCCGAGAGCAGGCCCTCGGGCTACTGAGTGACGCGCAGACGGCAGAACGG
AAAGACAAGGAGATTCTGCTTAAGCAGGTGCAAGAATTAGTCCTGCATCG
TGACCCGGCTTTGCTGGACGAGGTGGTGCCGTTGCTGATAAGCGAGTTTC
AAGCGGACCCTTTCCCTTCCATCCGCAAGTTCCTTATCGAATTTTTGGAG
GAGGTGGTTAAATCCCACCCAAGCTTCTGCCAGCCGGGTATGGTAGATGT
GTACGGCTTTGCTTTAATTCAAGAGGAATCCCCGGCGATCCTCAAAGGGT
GTTGA
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protein sequence of jgi.p|Nanoce1779_2|566972

>mRNA_6202-protein ID=mRNA_6202-protein|Name=jgi.p|Nanoce1779_2|566972|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MEPSHMDIAPMMVDDDDEDDILPAASLAPATTLLREQALGLLSDAQTAER
KDKEILLKQVQELVLHRDPALLDEVVPLLISEFQADPFPSIRKFLIEFLE
EVVKSHPSFCQPGMVDVYGFALIQEESPAILKGC*
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mRNA from alignment at scaffold_14:792221..792979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6202 ID=mRNA_6202|Name=jgi.p|Nanoce1779_2|566972|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at scaffold_14:792221..792979- (Nannochloropsis oceanica)
ATGGAGCCCTCTCACATGGATATAGCGCCGATGATGGTAGACGACGACGA
TGAGGATGATATACTCCCAGCCGCCTCCCTCGCTCCAGCAACGACTCTCC
TCCGAGAGCAGGCCCTCGGGCTACTGAGTGACGCGCAGACGGCAGAACGG
AAAGACAAGGAGATTCTGCTTAAGCAGGTGAGGAAGAACGGGAAGTAGGA
GGGAAGGGGTGGTTTGCTCGTCGGTGGGAAGTGCTTACCAGGGACAAATG
GAGGAATACGAAAAACATGAGGAAGCGAGAGAGAGAGAGAGCGAGGGGTA
GCAGGTGAACACTTGCTAAAACCATCGCTATACTGTGCACATCGGACACA
GGTGCAAGAATTAGTCCTGCATCGTGACCCGGCTTTGCTGGACGAGGTGG
TGCCGTTGCTGATAAGCGAGTTTCAAGTAAGCAGGGGAAAGGAGGGTGGG
CTGGCAGGGGGGTGTGAAGGACGAAGACACAGTTGTACAGTGGACGAGCG
CGATATAATCATCATACTCCATTCTTTTTATTATCTGTCTGTCTTATTGT
TAAGCACAACTTTCACCGGGCGCTTCTCTCCCTCCCTCCTTCCCTTCCTC
CGTCAGGCGGACCCTTTCCCTTCCATCCGCAAGTTCCTTATCGAATTTTT
GGAGGAGGTGGTTAAATCCCACCCAAGCTTCTGCCAGCCGGGTATGGTAG
ATGTGTACGGCTTTGCTTTAATTCAAGAGGAATCCCCGGCGATCCTCAAA
GGGTGTTGA
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Coding sequence (CDS) from alignment at scaffold_14:792221..792979-

>mRNA_6202 ID=mRNA_6202|Name=jgi.p|Nanoce1779_2|566972|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_14:792221..792979- (Nannochloropsis oceanica)
GCGGACCCTTTCCCTTCCATCCGCAAGTTCCTTATCGAATTTTTGGAGGA
GGTGGTTAAATCCCACCCAAGCTTCTGCCAGCCGGGTATGGTAGATGTGT
ACGGCTTTGCTTTAATTCAAGAGGAATCCCCGGCGATCCTCAAAGGGTGT
TGAGTGCAAGAATTAGTCCTGCATCGTGACCCGGCTTTGCTGGACGAGGT
GGTGCCGTTGCTGATAAGCGAGTTTCAAATGGAGCCCTCTCACATGGATA
TAGCGCCGATGATGGTAGACGACGACGATGAGGATGATATACTCCCAGCC
GCCTCCCTCGCTCCAGCAACGACTCTCCTCCGAGAGCAGGCCCTCGGGCT
ACTGAGTGACGCGCAGACGGCAGAACGGAAAGACAAGGAGATTCTGCTTA
AGCAGGCGGACCCTTTCCCTTCCATCCGCAAGTTCCTTATCGAATTTTTG
GAGGAGGTGGTTAAATCCCACCCAAGCTTCTGCCAGCCGGGTATGGTAGA
TGTGTACGGCTTTGCTTTAATTCAAGAGGAATCCCCGGCGATCCTCAAAG
GGTGTTGAGTGCAAGAATTAGTCCTGCATCGTGACCCGGCTTTGCTGGAC
GAGGTGGTGCCGTTGCTGATAAGCGAGTTTCAAATGGAGCCCTCTCACAT
GGATATAGCGCCGATGATGGTAGACGACGACGATGAGGATGATATACTCC
CAGCCGCCTCCCTCGCTCCAGCAACGACTCTCCTCCGAGAGCAGGCCCTC
GGGCTACTGAGTGACGCGCAGACGGCAGAACGGAAAGACAAGGAGATTCT
GCTTAAGCAGGCGGACCCTTTCCCTTCCATCCGCAAGTTCCTTATCGAAT
TTTTGGAGGAGGTGGTTAAATCCCACCCAAGCTTCTGCCAGCCGGGTATG
GTAGATGTGTACGGCTTTGCTTTAATTCAAGAGGAATCCCCGGCGATCCT
CAAAGGGTGTTGAGTGCAAGAATTAGTCCTGCATCGTGACCCGGCTTTGC
TGGACGAGGTGGTGCCGTTGCTGATAAGCGAGTTTCAAATGGAGCCCTCT
CACATGGATATAGCGCCGATGATGGTAGACGACGACGATGAGGATGATAT
ACTCCCAGCCGCCTCCCTCGCTCCAGCAACGACTCTCCTCCGAGAGCAGG
CCCTCGGGCTACTGAGTGACGCGCAGACGGCAGAACGGAAAGACAAGGAG
ATTCTGCTTAAGCAG
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Synonyms
Publications