jgi.p|Nanoce1779_2|523884, mRNA_62 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523884
Unique NamemRNA_62
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_3:174628..175414 +

Link to JBrowse

Properties
Property NameValue
TranscriptId523970
TrackFilteredModels2
ProteinId523884
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:174628..175414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523884gene_62Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523884mRNA_62-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_62CDS_62Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_62 ID=mRNA_62|Name=jgi.p|Nanoce1779_2|523884|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGGCCTCGGGCGTTGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACG
GAAGGAGCGCCGACGGGCCCATCAAGAGAACAATGACAAGAAATTTTCCC
ACAAGAGCCAAGACAAAGAGGATGTCAGAAAGGGCATCAATAAACACGCG
CCGAAAGAAATTTCCTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCAT
TGAGCCGTCCACTTCCTCTACTGCCACTGCTGCCGGGACGCATGGTACGC
ACGGACGTCGTCGGAAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGT
AACGTTAATTATGACGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTA
TGAGGAAAGGGAAATCCAGGCATTACAAGCAGCAAAAGAAGGGAAAGGGA
GAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGCTGATGCAGGAGAGGAGT
GAACGGCAGCGGTTCGAGAGGAGAGATGCTGTTTTACGTGCCACCAAGAA
GGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAAAACGCCCTATTATCTAA
AGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGGACCGTTACGAGCATTTG
GCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAGAAGAAGAGGAAGAGAAA
CGCAGCGAAGGACCATAGATGGCTGCCACGGAGTAGGAGGGAAGAGGGGC
AGGGCGGGGATGAAGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|523884

>mRNA_62-protein ID=mRNA_62-protein|Name=jgi.p|Nanoce1779_2|523884|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MASGVEGGGGVGAGRGRKERRRAHQENNDKKFSHKSQDKEDVRKGINKHA
PKEISSKKPVGRFRVVIEPSTSSTATAAGTHGTHGRRRKARDPRFDPAMG
NVNYDAFRKAYGFLEEYEEREIQALQAAKEGKGREGEVKQALSRLMQERS
ERQRFERRDAVLRATKKEERAKVAAGIKTPYYLKKKEKRRVELLDRYEHL
AKEGRLGKALEKKRKRNAAKDHRWLPRSRREEGQGGDEE*
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mRNA from alignment at scaffold_3:174628..175414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_62 ID=mRNA_62|Name=jgi.p|Nanoce1779_2|523884|organism=Nannochloropsis oceanica|type=mRNA|length=787bp|location=Sequence derived from alignment at scaffold_3:174628..175414+ (Nannochloropsis oceanica)
ATGGCCTCGGGCGTTGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACG
GAAGGAGCGCCGACGGGCCCATCAAGAGAACAATGACAAGAAATTTTCCC
ACAAGAGCCAAGACAAAGAGGATGTCAGAAAGGGCATCAATAAACACGCG
CCGAAAGAAATTTCCTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCAT
TGAGCCGTCCACTTCCTCTACTGCCACTGCTGCCGGGACGCATGGTACGC
ACGGACGTCGTCGGAAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGT
AACGTTAATTATGACGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTA
TGAGGAAAGGGAAATCCAGGCATTACAAGCAGCGTTGGGGAAGGGGGGGG
GGGGAGGGAGGGAAGGAGGGGCAAGGAAAGAAGAAGCTGGCGGCGATGAG
AAAAGAAGGGAAAGGGAGAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGC
TGATGCAGGAGAGGAGTGAACGGCAGCGGTTCGAGAGGAGAGATGCTGTT
TTACGTGCCACCAAGAAGGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAA
AACGCCCTATTATCTAAAGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGG
ACCGTTACGAGCATTTGGCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAG
AAGAAGAGGAAGAGAAACGCAGCGAAGGACCATAGATGGCTGCCACGGAG
TAGGAGGGAAGAGGGGCAGGGCGGGGATGAAGAGTAG
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Coding sequence (CDS) from alignment at scaffold_3:174628..175414+

>mRNA_62 ID=mRNA_62|Name=jgi.p|Nanoce1779_2|523884|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_3:174628..175414+ (Nannochloropsis oceanica)
ATGGCCTCGGGCGTTGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACG
GAAGGAGCGCCGACGGGCCCATCAAGAGAACAATGACAAGAAATTTTCCC
ACAAGAGCCAAGACAAAGAGGATGTCAGAAAGGGCATCAATAAACACGCG
CCGAAAGAAATTTCCTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCAT
TGAGCCGTCCACTTCCTCTACTGCCACTGCTGCCGGGACGCATGGTACGC
ACGGACGTCGTCGGAAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGT
AACGTTAATTATGACGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTA
TGAGGAAAGGGAAATCCAGGCATTACAAGCAGCAAAAGAAGGGAAAGGGA
GAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGCTGATGCAGGAGAGGAGT
GAACGGCAGCGGTTCGAGAGGAGAGATGCTGTTTTACGTGCCACCAAGAA
GGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAAAACGCCCTATTATCTAA
AGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGGACCGTTACGAGCATTTG
GCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAGAAGAAGAGGAAGAGAAA
CGCAGCGAAGGACCATAGATGGCTGCCACGGAGTAGGAGGGAAGAGGGGC
AGGGCGGGGATGAAGAGTAGATGGCCTCGGGCGTTGAGGGAGGAGGAGGA
GTGGGAGCAGGACGCGGACGGAAGGAGCGCCGACGGGCCCATCAAGAGAA
CAATGACAAGAAATTTTCCCACAAGAGCCAAGACAAAGAGGATGTCAGAA
AGGGCATCAATAAACACGCGCCGAAAGAAATTTCCTCCAAAAAACCTGTC
GGTCGGTTTCGGGTCGTCATTGAGCCGTCCACTTCCTCTACTGCCACTGC
TGCCGGGACGCATGGTACGCACGGACGTCGTCGGAAAGCGCGTGATCCTC
GCTTTGACCCTGCGATGGGTAACGTTAATTATGACGCCTTTCGCAAGGCT
TATGGATTTTTGGAGGAGTATGAGGAAAGGGAAATCCAGGCATTACAAGC
AGCAAAAGAAGGGAAAGGGAGAGAGGGGGAGGTGAAGCAGGCGTTGAGTC
GGCTGATGCAGGAGAGGAGTGAACGGCAGCGGTTCGAGAGGAGAGATGCT
GTTTTACGTGCCACCAAGAAGGAGGAAAGAGCCAAGGTGGCCGCCGGGAT
CAAAACGCCCTATTATCTAAAGAAGAAGGAGAAGAGGCGGGTGGAGCTGT
TGGACCGTTACGAGCATTTGGCGAAGGAGGGGAGGCTAGGCAAGGCCCTG
GAGAAGAAGAGGAAGAGAAACGCAGCGAAGGACCATAGATGGCTGCCACG
GAGTAGGAGGGAAGAGGGGCAGGGCGGGGATGAAGAGTAG
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Synonyms
Publications