jgi.p|Nanoce1779_2|594105, mRNA_6198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594105
Unique NamemRNA_6198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length263
Alignment locationscaffold_14:780021..780283 +

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Properties
Property NameValue
TranscriptId594191
TrackFilteredModels2
ProteinId594105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:780021..780283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594105gene_6198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594105mRNA_6198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6198CDS_6198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6198 ID=mRNA_6198|Name=jgi.p|Nanoce1779_2|594105|organism=Nannochloropsis oceanica|type=mRNA|length=263bp
GCTCTAGATGCTTGGTTTCGCTTTTTCATCTCATGTTCTGATTCGTGTCT
GCTCTATCTCCTTTTCTTTCATAAGAATTCTACATCTTCATCTGCAGCTC
TACCTTTTCCTTTTCTTCTATTTCTCACATTTTCCTCTCCCTCTATCTCT
AAATTTTAGCTTTTTGTCACACTTCGAGGCATGTGGGTAAAAATCTATCT
TTCTTTGTGTGCCTGTCTGCCTGTCTCCCTCTCTCCCTCTCTCCCTCCCT
CCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|594105

>mRNA_6198-protein ID=mRNA_6198-protein|Name=jgi.p|Nanoce1779_2|594105|organism=Nannochloropsis oceanica|type=polypeptide|length=61bp
MLGFAFSSHVLIRVCSISFSFIRILHLHLQLYLFLFFYFSHFPLPLSLNF
SFLSHFEACG*
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mRNA from alignment at scaffold_14:780021..780283+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6198 ID=mRNA_6198|Name=jgi.p|Nanoce1779_2|594105|organism=Nannochloropsis oceanica|type=mRNA|length=263bp|location=Sequence derived from alignment at scaffold_14:780021..780283+ (Nannochloropsis oceanica)
GCTCTAGATGCTTGGTTTCGCTTTTTCATCTCATGTTCTGATTCGTGTCT
GCTCTATCTCCTTTTCTTTCATAAGAATTCTACATCTTCATCTGCAGCTC
TACCTTTTCCTTTTCTTCTATTTCTCACATTTTCCTCTCCCTCTATCTCT
AAATTTTAGCTTTTTGTCACACTTCGAGGCATGTGGGTAAAAATCTATCT
TTCTTTGTGTGCCTGTCTGCCTGTCTCCCTCTCTCCCTCTCTCCCTCCCT
CCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_14:780021..780283+

>mRNA_6198 ID=mRNA_6198|Name=jgi.p|Nanoce1779_2|594105|organism=Nannochloropsis oceanica|type=CDS|length=183bp|location=Sequence derived from alignment at scaffold_14:780021..780283+ (Nannochloropsis oceanica)
ATGCTTGGTTTCGCTTTTTCATCTCATGTTCTGATTCGTGTCTGCTCTAT
CTCCTTTTCTTTCATAAGAATTCTACATCTTCATCTGCAGCTCTACCTTT
TCCTTTTCTTCTATTTCTCACATTTTCCTCTCCCTCTATCTCTAAATTTT
AGCTTTTTGTCACACTTCGAGGCATGTGGGTAA
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Synonyms
Publications