jgi.p|Nanoce1779_2|594104, mRNA_6197 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594104
Unique NamemRNA_6197
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length524
Alignment locationscaffold_14:779464..779987 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594190
TrackFilteredModels2
ProteinId594104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:779464..779987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594104gene_6197Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594104mRNA_6197-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6197CDS_6197Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6197 ID=mRNA_6197|Name=jgi.p|Nanoce1779_2|594104|organism=Nannochloropsis oceanica|type=mRNA|length=524bp
ACAGAATAATCAACTAAAGAGACACAAGTCATGGCTCTTTATTGCACACA
GCTTCGTCGTATCCTCTTCGCTGCCCTCCTTTTGGCGGCGCCCGTCCAAG
CTAGCCATCTCCGCGGGGCCATTCTCTCTGCTGCAAACAACAAGCAAGGT
AGGACAACGGCAGAGGCAGCGGTGACAGCAAGCATCGTTGCCGCACCGGA
GCCCATTCAATCAGTGTCCTTGCCTCCCATGCCCCTCAGCACGGAGGAGG
CGAACGGGAATATTCCCACCGGGGAAATGGTCGGGGGAGCGGCTAACGAG
GGAATGATGCACTTAGAGGAAAGCACCAGTGCGAACAGCACCGTCCCTTC
TGACCCATGCCCTGCCGACCAATGCTCCTACAACTGTAATTATGACGACG
AAGGGAACTACTCTTGCTTCTGCGGCTTGTGCGCGTAGATGGAAGTGGGA
AGGATGTAAGAGCGTAAAAAGCGTGGGATGGAGTAGGGGAAACGAAAAGA
TAGTAGCAATACAATTCATGACAG
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protein sequence of jgi.p|Nanoce1779_2|594104

>mRNA_6197-protein ID=mRNA_6197-protein|Name=jgi.p|Nanoce1779_2|594104|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MALYCTQLRRILFAALLLAAPVQASHLRGAILSAANNKQGRTTAEAAVTA
SIVAAPEPIQSVSLPPMPLSTEEANGNIPTGEMVGGAANEGMMHLEESTS
ANSTVPSDPCPADQCSYNCNYDDEGNYSCFCGLCA*
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mRNA from alignment at scaffold_14:779464..779987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6197 ID=mRNA_6197|Name=jgi.p|Nanoce1779_2|594104|organism=Nannochloropsis oceanica|type=mRNA|length=524bp|location=Sequence derived from alignment at scaffold_14:779464..779987+ (Nannochloropsis oceanica)
ACAGAATAATCAACTAAAGAGACACAAGTCATGGCTCTTTATTGCACACA
GCTTCGTCGTATCCTCTTCGCTGCCCTCCTTTTGGCGGCGCCCGTCCAAG
CTAGCCATCTCCGCGGGGCCATTCTCTCTGCTGCAAACAACAAGCAAGGT
AGGACAACGGCAGAGGCAGCGGTGACAGCAAGCATCGTTGCCGCACCGGA
GCCCATTCAATCAGTGTCCTTGCCTCCCATGCCCCTCAGCACGGAGGAGG
CGAACGGGAATATTCCCACCGGGGAAATGGTCGGGGGAGCGGCTAACGAG
GGAATGATGCACTTAGAGGAAAGCACCAGTGCGAACAGCACCGTCCCTTC
TGACCCATGCCCTGCCGACCAATGCTCCTACAACTGTAATTATGACGACG
AAGGGAACTACTCTTGCTTCTGCGGCTTGTGCGCGTAGATGGAAGTGGGA
AGGATGTAAGAGCGTAAAAAGCGTGGGATGGAGTAGGGGAAACGAAAAGA
TAGTAGCAATACAATTCATGACAG
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Coding sequence (CDS) from alignment at scaffold_14:779464..779987+

>mRNA_6197 ID=mRNA_6197|Name=jgi.p|Nanoce1779_2|594104|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_14:779464..779987+ (Nannochloropsis oceanica)
ATGGCTCTTTATTGCACACAGCTTCGTCGTATCCTCTTCGCTGCCCTCCT
TTTGGCGGCGCCCGTCCAAGCTAGCCATCTCCGCGGGGCCATTCTCTCTG
CTGCAAACAACAAGCAAGGTAGGACAACGGCAGAGGCAGCGGTGACAGCA
AGCATCGTTGCCGCACCGGAGCCCATTCAATCAGTGTCCTTGCCTCCCAT
GCCCCTCAGCACGGAGGAGGCGAACGGGAATATTCCCACCGGGGAAATGG
TCGGGGGAGCGGCTAACGAGGGAATGATGCACTTAGAGGAAAGCACCAGT
GCGAACAGCACCGTCCCTTCTGACCCATGCCCTGCCGACCAATGCTCCTA
CAACTGTAATTATGACGACGAAGGGAACTACTCTTGCTTCTGCGGCTTGT
GCGCGTAG
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Synonyms
Publications