jgi.p|Nanoce1779_2|631386, mRNA_6194 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631386
Unique NamemRNA_6194
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length955
Alignment locationscaffold_14:771399..772856 +

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Properties
Property NameValue
TranscriptId631472
TrackFilteredModels2
ProteinId631386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:771399..772856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631386gene_6194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631386mRNA_6194-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6194CDS_6194Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6194 ID=mRNA_6194|Name=jgi.p|Nanoce1779_2|631386|organism=Nannochloropsis oceanica|type=mRNA|length=955bp
GGAACGCAGTGAAGATTTCGCTGCTGCTTCCCCATGACATTATGACATTA
TGACATTATGACATGACATTACGTTTAGTAGATAGTTTTCGCGTAGGATA
TCAATGCCTAAAGTGGAAAAGGAGAAATACGACTTTGTCCAAGCACCCAC
GACCCACCCATCGTTGCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTCG
CTCGTGTGGAACTGCCCACTCACTTACCACCACATATATGCCAAACCCGT
AGACGACAACGCCCCAGCATGCCACAGACCTATAGCCAGGGTAGTACCAT
GGCCTACAGAACATCTGCTATTTTCGTGGCCATCCTCCTCCTTCTCACCA
TCAGCATCACCCACGCCTTCATCCTCCCGCACTCTGTATGTCAACCTGCC
TCCTCTTCCTCTTCGAGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCGACTACATGCACAACCACACCACTTGACGGTACTGCCAA
TACCAGGCTGCTGTGGTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAGT
CCGACAGCACTCTTTTTGGCCTTTGGCACGCCCGAGCTCCTCCTCGCCGC
GGACCTCAAAAAAGTGCTATCTGATGACATCTACGGGCCCATGTTCCTGC
AAGCTCTCCTTTTGTCCGTCTCTGGCTTTGTGGCCGCCGCAGCCTTGGCA
GCCGTCATCATCTTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGAGGA
AGCCTACCAAGACCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCGAGG
AGGAGGACGGCACTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTGCCC
GTCACGGCCGAGGCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGAGGA
AAGATTAGTGGCGGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTGAGG
ATTAG
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protein sequence of jgi.p|Nanoce1779_2|631386

>mRNA_6194-protein ID=mRNA_6194-protein|Name=jgi.p|Nanoce1779_2|631386|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MPKVEKEKYDFVQAPTTHPSLPSTLRLVMLLVARVELPTHLPPHICQTRR
RQRPSMPQTYSQGSTMAYRTSAIFVAILLLLTISITHAFILPHSVCQPAS
SSSSSRVQQQQQQQQQQQQRLHAQPHHLTVLPIPGCCGGRSRSSSSSNSP
TALFLAFGTPELLLAADLKKVLSDDIYGPMFLQALLLSVSGFVAAAALAA
VIIFRGDVLTDELLEEAYQDRDELRERVGATEEEDGTLIVGFKEPPALPV
TAEATEKERARREREERLVAAGGKPGEVNDFED*
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mRNA from alignment at scaffold_14:771399..772856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6194 ID=mRNA_6194|Name=jgi.p|Nanoce1779_2|631386|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_14:771399..772856+ (Nannochloropsis oceanica)
GGAACGCAGTGAAGATTTCGCTGCTGCTTCCCCATGACATTATGACATTA
TGACATTATGACATGACATTACGTTTAGTAGATAGTTTTCGCGTAGGATA
TCAATGCCTAAAGTGGAAAAGGAGAAATACGACTTTGTCCAAGCACCCAC
GACCCACCCATCGTTGCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTCG
CTCGTGTGGAACTGCCCACTCACTTACCACCACATATATGCCAAACCCGT
AGACGACAACGCCCCAGCATGCCACAGACCTATAGCCAGGGTAGTACCAT
GGCCTACAGAACATCTGCTATTTTCGTGGCCATCCTCCTCCTTCTCACCA
TCAGCATCACCCACGCCTTCATCCTCCCGCACTCTGTATGTCAACCTGCC
TCCTCTTCCTCTTCGAGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCGACTACATGCACAACCACACCACTTGACGGTACTGCCAA
TACCAGGCTGCTGTGGTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAGT
CCGACAGCACTCTTTTTGGCCTTTGGCACGCCCGAGGTATGTTGTCGGTC
CGTTTTGGCTCTCCCCAGTCTTTCGTTCGGAGGTATAGGGGAGAGCGCTA
CTATTTCCTCATTAAAGCGGTGAACTGCCGTGGTGCCTGGTTTTCCAGGT
TTTGGTTGGGTGTGGTGTATGTGCACTTATTCTTCAGGATGGTGATCTGC
CCTCTGTCCGGGGGGGTCCTGGCCATCCATCTCCCATCTTCCCTTCCACC
TGCTCTCATGAAGGCTTTGTCATGTCAACCACGTCTTATTTCAATGCGTC
TTTACATAGCCTCTTACCGAAATTAAGATGACATATTTTCCTCTCTCACC
CTTATCCCCACCCCGCCACCCTTCATCCTACCCCTCCCTCCCTCCCTCCT
TCCCTCAGCTCCTCCTCGCCGCGGACCTCAAAAAAGTGCTATCTGATGAC
ATCTACGGGCCCATGTTCCTGCAAGCTCTCCTTTTGTCCGTCTCTGGCTT
TGTGGCCGCCGCAGCCTTGGCAGGTTCGAGACTGCTCCCTCCCTCCCTCC
TCTCCCTCCCTCTCTCCCTCCCTCCCTCAAACCCATGTTGTCGATACCCA
TGATTTGAAACTTCTCTCTCTCCCTCCCTCCTTTCCGTCCAATCCCCTAT
CCAGCCGTCATCATCTTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGA
GGAAGCCTACCAAGACCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCG
AGGAGGAGGACGGCACTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTG
CCCGTCACGGCCGAGGCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGA
GGAAAGATTAGTGGCGGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTG
AGGATTAG
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Coding sequence (CDS) from alignment at scaffold_14:771399..772856+

>mRNA_6194 ID=mRNA_6194|Name=jgi.p|Nanoce1779_2|631386|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_14:771399..772856+ (Nannochloropsis oceanica)
ATGCCTAAAGTGGAAAAGGAGAAATACGACTTTGTCCAAGCACCCACGAC
CCACCCATCGTTGCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTCGCTC
GTGTGGAACTGCCCACTCACTTACCACCACATATATGCCAAACCCGTAGA
CGACAACGCCCCAGCATGCCACAGACCTATAGCCAGGGTAGTACCATGGC
CTACAGAACATCTGCTATTTTCGTGGCCATCCTCCTCCTTCTCACCATCA
GCATCACCCACGCCTTCATCCTCCCGCACTCTGTATGTCAACCTGCCTCC
TCTTCCTCTTCGAGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGCAGCA
GCAGCAGCGACTACATGCACAACCACACCACTTGACGGTACTGCCAATAC
CAGGCTGCTGTGGTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAGTCCG
ACAGCACTCTTTTTGGCCTTTGGCACGCCCGAGCTCCTCCTCGCCGCGGA
CCTCAAAAAAGTGCTATCTGATGACATCTACGGGCCCATGTTCCTGCAAG
CTCTCCTTTTGTCCGTCTCTGGCTTTGTGGCCGCCGCAGCCTTGGCAGCC
GTCATCATCTTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGAGGAAGC
CTACCAAGACCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCGAGGAGG
AGGACGGCACTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTGCCCGTC
ACGGCCGAGGCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGAGGAAAG
ATTAGTGGCGGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTGAGGATT
AGATGCCTAAAGTGGAAAAGGAGAAATACGACTTTGTCCAAGCACCCACG
ACCCACCCATCGTTGCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTCGC
TCGTGTGGAACTGCCCACTCACTTACCACCACATATATGCCAAACCCGTA
GACGACAACGCCCCAGCATGCCACAGACCTATAGCCAGGGTAGTACCATG
GCCTACAGAACATCTGCTATTTTCGTGGCCATCCTCCTCCTTCTCACCAT
CAGCATCACCCACGCCTTCATCCTCCCGCACTCTGTATGTCAACCTGCCT
CCTCTTCCTCTTCGAGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGCAG
CAGCAGCAGCGACTACATGCACAACCACACCACTTGACGGTACTGCCAAT
ACCAGGCTGCTGTGGTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAGTC
CGACAGCACTCTTTTTGGCCTTTGGCACGCCCGAGCTCCTCCTCGCCGCG
GACCTCAAAAAAGTGCTATCTGATGACATCTACGGGCCCATGTTCCTGCA
AGCTCTCCTTTTGTCCGTCTCTGGCTTTGTGGCCGCCGCAGCCTTGGCAG
CCGTCATCATCTTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGAGGAA
GCCTACCAAGACCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCGAGGA
GGAGGACGGCACTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTGCCCG
TCACGGCCGAGGCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGAGGAA
AGATTAGTGGCGGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTGAGGA
TTAGATGCCTAAAGTGGAAAAGGAGAAATACGACTTTGTCCAAGCACCCA
CGACCCACCCATCGTTGCCTTCCACCCTCCGCCTTGTGATGCTCCTTGTC
GCTCGTGTGGAACTGCCCACTCACTTACCACCACATATATGCCAAACCCG
TAGACGACAACGCCCCAGCATGCCACAGACCTATAGCCAGGGTAGTACCA
TGGCCTACAGAACATCTGCTATTTTCGTGGCCATCCTCCTCCTTCTCACC
ATCAGCATCACCCACGCCTTCATCCTCCCGCACTCTGTATGTCAACCTGC
CTCCTCTTCCTCTTCGAGCCGCGTACAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAGCGACTACATGCACAACCACACCACTTGACGGTACTGCCA
ATACCAGGCTGCTGTGGTGGCAGAAGTAGAAGCAGCAGTAGCAGCAATAG
TCCGACAGCACTCTTTTTGGCCTTTGGCACGCCCGAGCTCCTCCTCGCCG
CGGACCTCAAAAAAGTGCTATCTGATGACATCTACGGGCCCATGTTCCTG
CAAGCTCTCCTTTTGTCCGTCTCTGGCTTTGTGGCCGCCGCAGCCTTGGC
AGCCGTCATCATCTTCCGCGGCGATGTCCTGACGGACGAGCTCCTAGAGG
AAGCCTACCAAGACCGGGATGAATTGCGCGAAAGGGTGGGCGCTACCGAG
GAGGAGGACGGCACTTTAATAGTAGGGTTTAAGGAGCCCCCCGCCTTGCC
CGTCACGGCCGAGGCCACGGAGAAGGAAAGGGCCAGACGGGAGAGGGAGG
AAAGATTAGTGGCGGCGGGGGGGAAGCCAGGGGAGGTGAATGATTTTGAG
GATTAG
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Synonyms
Publications