jgi.p|Nanoce1779_2|594078, mRNA_6192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594078
Unique NamemRNA_6192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1107
Alignment locationscaffold_14:765284..766843 +

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Properties
Property NameValue
TranscriptId594164
TrackFilteredModels2
ProteinId594078
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:765284..766843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594078gene_6192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594078mRNA_6192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6192CDS_6192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6192 ID=mRNA_6192|Name=jgi.p|Nanoce1779_2|594078|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
GCTCGTTGTGTCTGTTGTCGTCGCCGGCGAAGACGTTTCGCAACCCTCAT
CGAGGGTTTTCTCCTCCTTCCCTTCCTCCTTCCCTTCCGCCATACCTTTT
TCAACCGGCGAGGAGGCCGTGGGGGAGAAGGAGCGACCTGAAGAGACTGG
CGGTGCCTCCCTTCTTATGCTACTGCTGCCATTGTTGCCATTGCTGCTGC
TGCCGTCGACGTTGTTGTTATTGCTGCTGCTGCCGCAGCGGGTCGTTGAA
TCAGTCCCTCCCTCCTTCCCTCCCCCTTCTCTTCCCAGCCTCTCAAGCTG
GCTAAGAAGGAGGTCAAGGCGGCCTAATGTCTTTGCAAGTGCCGCAGAGG
TGGCGTCCGAGGCGGGGGGGGAGGACGAGGACAAGGACGAGGAAGGGAGG
GAGGCATGGAGGGGCGAAGAACTGGCTTCAAACACGGCGAGGTCATGCTG
CGCCTCTTTCAGCTGTAGACCCACAGTATGCTTGATGAGGGCCACTTCAT
CAGCTATCACGTCATCTGCTATGCTTCCTCCTTTTATTGTTGCTGCTGCT
GCTACTTCGCGTCCCTCGCTTCCTCTCCTTGCTACTCGCCCTTCCTGCCC
TACACCCCCAATGACCTGCAAAGCCAGACACACACGCCTTGTAATTTGGT
AAGCAATTAATGCTGTGAAGTTCTGCTGTTGCTGCTGTTGTGAAGCGGGA
GGAGAGGAGGGAGAAGAGGAGGAGGAGAAGGAGGAGGTGAAGGGTGGTGG
TAGATGGGCGAGGGTGCCCTCCCATCTTACAAGGTCGTGAAACTTCTCAT
GGGGATGAGAAGTTGAGGACGAGGAGGAGCAAGCAGTGGAAGAATGGGCG
CAGACATCACCAGGGACAACTGGGGCAGAAGGAAGGGGGAAAGCTTGTGT
ATGGGTGCCCTTGCTAGCTTCTATGTTGGAGGCTTGTATCATGGCCTCGA
CGAAGAAGGGGCGTCCAAGGCAGTTTCCTGAAGGGTCAGGAGAACCTGAA
GAACAAAGGTCAGGAACGGTGACGTGTAGCTTTGTCTCGTGGGTGTTGTT
TTCTGCTCCTCCGCCTCCTATACACAGGTATTATGCCCTCCCTGTCGTAG
GTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|594078

>mRNA_6192-protein ID=mRNA_6192-protein|Name=jgi.p|Nanoce1779_2|594078|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MLLLPLLPLLLLPSTLLLLLLLPQRVVESVPPSFPPPSLPSLSSWLRRRS
RRPNVFASAAEVASEAGGEDEDKDEEGREAWRGEELASNTARSCCASFSC
RPTVCLMRATSSAITSSAMLPPFIVAAAATSRPSLPLLATRPSCPTPPMT
CKARHTRLVIW*
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mRNA from alignment at scaffold_14:765284..766843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6192 ID=mRNA_6192|Name=jgi.p|Nanoce1779_2|594078|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at scaffold_14:765284..766843+ (Nannochloropsis oceanica)
GCTCGTTGTGTCTGTTGTCGTCGCCGGCGAAGACGTTTCGCAACCCTCAT
CGAGGGTTTTCTCCTCCTTCCCTTCCTCCTTCCCTTCCGCCATACCTTTT
TCAACCGGCGAGGAGGCCGTGGGGGAGAAGGAGCGACCTGAAGAGACTGG
CGGTGCCTCCCTTCTTATGCTACTGCTGCCATTGTTGCCATTGCTGCTGC
TGCCGTCGACGTTGTTGTTATTGCTGCTGCTGCCGCAGCGGGTCGTTGAA
TCAGTCCCTCCCTCCTTCCCTCCCCCTTCTCTTCCCAGCCTCTCAAGCTG
GCTAAGAAGGAGGTCAAGGCGGCCTAATGTCTTTGCAAGTGCCGCAGAGG
TGGCGTCCGAGGCGGGGGGGGAGGACGAGGACAAGGACGAGGAAGGGAGG
GAGGCATGGAGGGGCGAAGAACTGGCTTCAAACACGGCGAGGTCATGCTG
CGCCTCTTTCAGCTGTAGACCCACAGTATGCTTGATGAGGGCCACTTCAT
CAGCTATCACGTCATCTGCTATGCTTCCTCCTTTTATTGTTGCTGCTGCT
GCTACTTCGCGTCCCTCGCTTCCTCTCCTTGCTACTCGCCCTTCCTGCCC
TACACCCCCAATGACCTGCAAAGCCAGACACACACGCCTTGTAATTTGGT
AAGCAATTAATGCTGTGAAGTTCTGCTGTTGCTGCTGTTGTGAAGCGGGA
GGAGAGGAGGGAGAAGAGGAGGAGGAGAAGGAGGAGGTGAAGGGTGGTGG
TAGATGGGCGAGGGTGCCCTCCCATCTTACAAGGTCGTGAAACTTCTCAT
GGGGATGAGAAGTTGAGGACGAGGAGGAGCAAGCAGTGGAAGAATGGGCG
CAGACATCACCAGGGACAACTGGGGCAGAAGGAAGGGGGAAAGCTTGTGT
ATGGGTGCCCTTGCTAGCTTCTGCGGGGTGATAAGGGAGGGAGGGAGAGA
GGGAGGGAGGAATGAGGCAAGATGCGGAGATCTGCTCTGGCCACCGTAAA
AAGGCGTACTATTCCTCTGAATAATGTGCAAGGAGTGGGGCGGGGGAGAA
TAGTGTGAAGTATAAGTAAAAAGATCGAATGGTGGGAAAGGGAGACACAC
GTGTCTATGCTAGGGCGTGAGACATACATAACACTCTCTTTGTGAATTCT
TGTCCGTTTTTAACCAAGCCTGCTTTCGTCCTCTACTATCTGTACCTGTA
CATGCCGTAAATGATTCTATACATGCGTCTTGTGAGAGAAAGAAGCGAGT
GTTGCATTGCGTTTCTAGACTCCCAAAATGACAGAATCGACGGGGATACT
TGCGCACTGCCAGCAAGCACGAAAGTAGACGCTCCAAATAAAAACCCCAT
CCCTTGTCCACACTCAAACTAACCTATGTTGGAGGCTTGTATCATGGCCT
CGACGAAGAAGGGGCGTCCAAGGCAGTTTCCTGAAGGGTCAGGAGAACCT
GAAGAACAAAGGTCAGGAACGGTGACGTGTAGCTTTGTCTCGTGGGTGTT
GTTTTCTGCTCCTCCGCCTCCTATACACAGGTATTATGCCCTCCCTGTCG
TAGGTGCTGT
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Coding sequence (CDS) from alignment at scaffold_14:765284..766843+

>mRNA_6192 ID=mRNA_6192|Name=jgi.p|Nanoce1779_2|594078|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_14:765284..766843+ (Nannochloropsis oceanica)
ATGCTACTGCTGCCATTGTTGCCATTGCTGCTGCTGCCGTCGACGTTGTT
GTTATTGCTGCTGCTGCCGCAGCGGGTCGTTGAATCAGTCCCTCCCTCCT
TCCCTCCCCCTTCTCTTCCCAGCCTCTCAAGCTGGCTAAGAAGGAGGTCA
AGGCGGCCTAATGTCTTTGCAAGTGCCGCAGAGGTGGCGTCCGAGGCGGG
GGGGGAGGACGAGGACAAGGACGAGGAAGGGAGGGAGGCATGGAGGGGCG
AAGAACTGGCTTCAAACACGGCGAGGTCATGCTGCGCCTCTTTCAGCTGT
AGACCCACAGTATGCTTGATGAGGGCCACTTCATCAGCTATCACGTCATC
TGCTATGCTTCCTCCTTTTATTGTTGCTGCTGCTGCTACTTCGCGTCCCT
CGCTTCCTCTCCTTGCTACTCGCCCTTCCTGCCCTACACCCCCAATGACC
TGCAAAGCCAGACACACACGCCTTGTAATTTGGTAA
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Synonyms
Publications