jgi.p|Nanoce1779_2|573542, mRNA_619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573542
Unique NamemRNA_619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length940
Alignment locationscaffold_2:23820..25087 -

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Properties
Property NameValue
TranscriptId573628
TrackFilteredModels2
ProteinId573542
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:23820..25087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573542gene_619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573542mRNA_619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_619CDS_619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_619 ID=mRNA_619|Name=jgi.p|Nanoce1779_2|573542|organism=Nannochloropsis oceanica|type=mRNA|length=940bp
GGACGTGGCTTTGGTGGCGGGCGTGGCGCTCCCCGAGGGGGCGGCCGTGG
AGCCCCTCGAGGACGAGGAGGAGGCCGAGGGGGAGGTCGAGGAGGTGGAC
GCGGGGGGGGGGGAATGAAGGGAGGGGCAAAGGTAGTGATTGAGGCCCAC
CGGCACGAAGGAGTATTTATCGCCCGAAGTAAAGAGGATGCCTTAGTGAC
GCTCAACAGCACGCCAGGAAAGGACGTGTATGGGGAGAAGAGAATCCAGG
TGGAAGGGCCACCAGGACCGGAGGGAGTGGCGACCAAGCTCGAATACCGT
GTTTGGAATCCCTTCCGGTCGAAGCTGGCTGCGGCGATCTTGGGAGGTGT
CGACCACATATGGATGGGGCCGGGGAGCAAGGTGTTGTATCTGGGGGCAG
CGAGCGGGACGACAGTAAGCCACGTGTCAGATATTGTGGGGCCGACGGGC
TGTGTGTACGCGGTGGAGTTCTCGCACCGCCCGGGGCGGGATTTGATCAA
CATGGCCAAGCTGCGGACGAATGTGATTCCAATCGTGGAGGATGCACGAC
ACCCGTTGAAGTACCGCATGCTAGTCGGCATGGTTGACACGATCTTCGCC
GACGTGGCCCAGCCGGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTA
CTTCCTCAAAAATGGCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTA
TTGATTCCACTGCTGCCCCTGAAGCAGTATTCCAAAAAGAGGTGAAGAAG
CTACAAGAAGAGAAATTCAAGCCACTGGAGCAGCTGACGCTCGAGCCTTA
CGAGCGAGATCACGCGGTGGTCGTTGCCACCTACAGGCCCGCGCCCAAGG
CCAAGAAATAGAGGAAGGGAGGGAGGGACGGAGGGAGGGAGGGACGGAGG
GAGGGAGGGAGGGAAGGAAGAAAGAGTTTTTTATAAATAT
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protein sequence of jgi.p|Nanoce1779_2|573542

>mRNA_619-protein ID=mRNA_619-protein|Name=jgi.p|Nanoce1779_2|573542|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MKGGAKVVIEAHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVEGPP
GPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMGPGSKVLYLGAASGTT
VSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKY
RMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVVSVKASCIDSTA
APEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKAKK*
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mRNA from alignment at scaffold_2:23820..25087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_619 ID=mRNA_619|Name=jgi.p|Nanoce1779_2|573542|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp|location=Sequence derived from alignment at scaffold_2:23820..25087- (Nannochloropsis oceanica)
GGACGTGGCTTTGGTGGCGGGCGTGGCGCTCCCCGAGGGGGCGGCCGTGG
AGCCCCTCGAGGACGAGGAGGAGGCCGAGGGGGAGGTCGAGGAGGTGGAC
GCGGGGGGGGGGGAATGAAGGGAGGGGCAAAGGTAGTGATTGAGGCCCAC
CGGCACGAAGGAGTATTTATCGCCCGAAGTAAAGAGGATGCCTTAGTGAC
GCTCAACAGCACGCCAGGAAAGGACGTGTATGGGGAGAAGAGAATCCAGG
TGGAAGGGCCACCAGGACCGGAGGGAGTGGCGACCAAGCTCGAATACCGT
GTTTGGAATCCCTTCCGGTCGAAGCTGGCTGCGGCGATCTTGGGAGGTGT
CGACCACATATGGATGGGGCCGGGGAGCAAGGTGTTGTATCTGGGGGCAG
CGAGCGGGACGACAGTAAGCCACGTGTCAGATATTGTGGGGCCGACGGGC
TGTGTGTACGCGGTGGAGTTCTCGCACCGCCCGGGGCGGGATTTGATCAA
CATGGCCAAGCTGCGGACGAATGTGATTCCAATCGTGGAGGATGCACGAC
ACCCGTTGAAGTACCGCATGCTAGGTAGGCTGAGAGGATTGGAGAAGCAC
AGAGAGGGAAGGTGGAAAGGATTTGGATTTTTGAGCCCTTGTCTCCTTTA
TGTAGGTAAATTTTCACATCCCTTCCCCTCCCTCCCTCCCTGTCTCCCGC
CCTCCCGCAGTCGGCATGGTTGACACGATCTTCGCCGACGTGGCCCAGCC
GGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTACTTCCTCAAAAATG
GCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTATTGATTCCACTGCT
GCCCCTGAAGCAGTATTCCAAAAAGAGGTAATATATATGCATATGGCCTT
GCCATTCCCCCCCCCTATTCCTCCCTCTCTCCCTTTTTTACGACTTTTTA
TTTTTCGACTGGGGCTTGGTGCAATTTCTGCTCTTAAGAAATTTAGAGAC
ACCTTCAGATTCACTCACCCTCCTCCGCTCCCTCCCTCTCTCACCCCCAT
TAGGTGAAGAAGCTACAAGAAGAGAAATTCAAGCCACTGGAGCAGCTGAC
GCTCGAGCCTTACGAGCGAGATCACGCGGTGGTCGTTGCCACCTACAGGC
CCGCGCCCAAGGCCAAGAAATAGAGGAAGGGAGGGAGGGACGGAGGGAGG
GAGGGACGGAGGGAGGGACGGAGAGAGGGACAGAGGGAGGGAAGGAAGAA
AGAGTTTTTTATAAATAT
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Coding sequence (CDS) from alignment at scaffold_2:23820..25087-

>mRNA_619 ID=mRNA_619|Name=jgi.p|Nanoce1779_2|573542|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at scaffold_2:23820..25087- (Nannochloropsis oceanica)
GTGAAGAAGCTACAAGAAGAGAAATTCAAGCCACTGGAGCAGCTGACGCT
CGAGCCTTACGAGCGAGATCACGCGGTGGTCGTTGCCACCTACAGGCCCG
CGCCCAAGGCCAAGAAATAGTCGGCATGGTTGACACGATCTTCGCCGACG
TGGCCCAGCCGGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTACTTC
CTCAAAAATGGCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTATTGA
TTCCACTGCTGCCCCTGAAGCAGTATTCCAAAAAGAGATGAAGGGAGGGG
CAAAGGTAGTGATTGAGGCCCACCGGCACGAAGGAGTATTTATCGCCCGA
AGTAAAGAGGATGCCTTAGTGACGCTCAACAGCACGCCAGGAAAGGACGT
GTATGGGGAGAAGAGAATCCAGGTGGAAGGGCCACCAGGACCGGAGGGAG
TGGCGACCAAGCTCGAATACCGTGTTTGGAATCCCTTCCGGTCGAAGCTG
GCTGCGGCGATCTTGGGAGGTGTCGACCACATATGGATGGGGCCGGGGAG
CAAGGTGTTGTATCTGGGGGCAGCGAGCGGGACGACAGTAAGCCACGTGT
CAGATATTGTGGGGCCGACGGGCTGTGTGTACGCGGTGGAGTTCTCGCAC
CGCCCGGGGCGGGATTTGATCAACATGGCCAAGCTGCGGACGAATGTGAT
TCCAATCGTGGAGGATGCACGACACCCGTTGAAGTACCGCATGCTAGGTG
AAGAAGCTACAAGAAGAGAAATTCAAGCCACTGGAGCAGCTGACGCTCGA
GCCTTACGAGCGAGATCACGCGGTGGTCGTTGCCACCTACAGGCCCGCGC
CCAAGGCCAAGAAATAGTCGGCATGGTTGACACGATCTTCGCCGACGTGG
CCCAGCCGGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTACTTCCTC
AAAAATGGCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTATTGATTC
CACTGCTGCCCCTGAAGCAGTATTCCAAAAAGAGATGAAGGGAGGGGCAA
AGGTAGTGATTGAGGCCCACCGGCACGAAGGAGTATTTATCGCCCGAAGT
AAAGAGGATGCCTTAGTGACGCTCAACAGCACGCCAGGAAAGGACGTGTA
TGGGGAGAAGAGAATCCAGGTGGAAGGGCCACCAGGACCGGAGGGAGTGG
CGACCAAGCTCGAATACCGTGTTTGGAATCCCTTCCGGTCGAAGCTGGCT
GCGGCGATCTTGGGAGGTGTCGACCACATATGGATGGGGCCGGGGAGCAA
GGTGTTGTATCTGGGGGCAGCGAGCGGGACGACAGTAAGCCACGTGTCAG
ATATTGTGGGGCCGACGGGCTGTGTGTACGCGGTGGAGTTCTCGCACCGC
CCGGGGCGGGATTTGATCAACATGGCCAAGCTGCGGACGAATGTGATTCC
AATCGTGGAGGATGCACGACACCCGTTGAAGTACCGCATGCTAGGTGAAG
AAGCTACAAGAAGAGAAATTCAAGCCACTGGAGCAGCTGACGCTCGAGCC
TTACGAGCGAGATCACGCGGTGGTCGTTGCCACCTACAGGCCCGCGCCCA
AGGCCAAGAAATAGTCGGCATGGTTGACACGATCTTCGCCGACGTGGCCC
AGCCGGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTACTTCCTCAAA
AATGGCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTATTGATTCCAC
TGCTGCCCCTGAAGCAGTATTCCAAAAAGAGATGAAGGGAGGGGCAAAGG
TAGTGATTGAGGCCCACCGGCACGAAGGAGTATTTATCGCCCGAAGTAAA
GAGGATGCCTTAGTGACGCTCAACAGCACGCCAGGAAAGGACGTGTATGG
GGAGAAGAGAATCCAGGTGGAAGGGCCACCAGGACCGGAGGGAGTGGCGA
CCAAGCTCGAATACCGTGTTTGGAATCCCTTCCGGTCGAAGCTGGCTGCG
GCGATCTTGGGAGGTGTCGACCACATATGGATGGGGCCGGGGAGCAAGGT
GTTGTATCTGGGGGCAGCGAGCGGGACGACAGTAAGCCACGTGTCAGATA
TTGTGGGGCCGACGGGCTGTGTGTACGCGGTGGAGTTCTCGCACCGCCCG
GGGCGGGATTTGATCAACATGGCCAAGCTGCGGACGAATGTGATTCCAAT
CGTGGAGGATGCACGACACCCGTTGAAGTACCGCATGCTAG
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Synonyms
Publications