jgi.p|Nanoce1779_2|640200, mRNA_6187 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640200
Unique NamemRNA_6187
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length336
Alignment locationscaffold_14:750427..750762 +

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Properties
Property NameValue
TranscriptId640286
TrackFilteredModels2
ProteinId640200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:750427..750762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640200gene_6187Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640200mRNA_6187-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6187CDS_6187Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6187 ID=mRNA_6187|Name=jgi.p|Nanoce1779_2|640200|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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protein sequence of jgi.p|Nanoce1779_2|640200

>mRNA_6187-protein ID=mRNA_6187-protein|Name=jgi.p|Nanoce1779_2|640200|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPLGTGKEPVAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVL
VPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELT
DDIRIVYGLQA*
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mRNA from alignment at scaffold_14:750427..750762+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6187 ID=mRNA_6187|Name=jgi.p|Nanoce1779_2|640200|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at scaffold_14:750427..750762+ (Nannochloropsis oceanica)
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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Coding sequence (CDS) from alignment at scaffold_14:750427..750762+

>mRNA_6187 ID=mRNA_6187|Name=jgi.p|Nanoce1779_2|640200|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_14:750427..750762+ (Nannochloropsis oceanica)
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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Synonyms
Publications