jgi.p|Nanoce1779_2|649428, mRNA_6185 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|649428
Unique Name	mRNA_6185
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1081
Alignment location	scaffold_14:744668..746054 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	649514
Track	FilteredModels2
ProteinId	649428

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:744668..746054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649428	gene_6185	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649428	mRNA_6185-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6185	CDS_6185	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:744668..746054+
coding sequence from alignment at scaffold_14:744668..746054+

mRNA sequence

>mRNA_6185 ID=mRNA_6185|Name=jgi.p|Nanoce1779_2|649428|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAGAAAGCAAAGAGTAT
GACCAATTCGCCAAGCGTCGCCGGAGAGCTCGCACATAGCGCCAGTATTA
TTCTCAAGAGCAGCAGTAAAAGCACTCATACGTTGGACGCCGCCGAGACC
AGCAAGGCACAACGCCTGGCCACGAGCGCAGGGGATTTTGATGAGATAGT
GGCGTGGCTGGATTGGGAGTTTGCCAAGCATGATAACAACAAAGATGGCT
TTCTCGATTACCATGAATTTGTGCGGTTTATCCGCTCGCTGAACCTGAAC
ATGACCACGAAGGAGATTTTCCAATTTTTCCTCCTCGCTGACCGTGACAA
TGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATGTGCCTCGGATCT
TGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCAGATTGGTGCCTC
ATGAGCGGGAAGGAAGGAGGAAAGGAGGGGGAGGTGTGGTATTTCAATAA
ACGGACATCGGATGTAAGAAAGCAGACGCCGATAGAGCTGGGAGATGGAG
GAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGCCAAGGAGGGCGA
AAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGTGGCGCTGACGTG
GTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAAATGGAATTTTGT
CACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGCTTGGGCTTGAAT
GAAAAGGAGGTGGAACAATTTACCAGTCTGGCGGATTCCAACGGGGACGG
CATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCCTTCGCA
AGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCTATTATC
GACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCTGACGGT
ATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGGAGGAGG
GGAAAGCAGAGGGAGGGGAGGCTTGAGAGTGACAGGAAAGCAATGAGGAG
TACAAAATAGTATGAGGAGAGATAGTGTTAA

protein sequence of jgi.p|Nanoce1779_2|649428

>mRNA_6185-protein ID=mRNA_6185-protein|Name=jgi.p|Nanoce1779_2|649428|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MGSGQSSAARRKKAKSMTNSPSVAGELAHSASIILKSSSKSTHTLDAAET
SKAQRLATSAGDFDEIVAWLDWEFAKHDNNKDGFLDYHEFVRFIRSLNLN
MTTKEIFQFFLLADRDNDYRIVWCEIEQDVPRILSKIYEGIPEGPSDWCL
MSGKEGGKEGEVWYFNKRTSDVRKQTPIELGDGGGEYGIKENVDMGQGGR
KEAVLENTKTLDVALTWLDWEFKKADFDKNGILSHHEFMAFVRGLRLGLN
EKEVEQFTSLADSNGDGMVEWTEVLELTPLILRKLYTALPPGPHDWCAII
DAEENEYYLNKRTGLTVSTRPPDYVPVRTETEEGKAEGGEA*

mRNA from alignment at scaffold_14:744668..746054+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6185 ID=mRNA_6185|Name=jgi.p|Nanoce1779_2|649428|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at scaffold_14:744668..746054+ (Nannochloropsis oceanica)
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAGAAAGCAAAGAGTAT
GACCAATTCGCCAAGGTACGCACCCTCCTCCTTTTACCCCTCTTAGCTTC
TGGTCTTGCCCGTTTTCACTCACATTACTCCAAACTTCACACCAAGCGTC
GCCGGAGAGCTCGCACATAGCGCCAGTATTATTCTCAAGAGCAGCAGTAA
AAGCACTCATACGTTGGACGCCGCCGAGACCAGCAAGGCACAACGCCTGG
CCACGAGCGCAGGGGATTTTGATGAGATAGTGGCGTGGCTGGATTGGGAG
TTTGCCAAGCATGATAACAACAAAGATGGCTTTCTCGATTACCATGAATT
TGTGCGGTTTATCCGCTCGCTGAACCTGAACATGACCACGAAGGAGGTGA
GTGGTGGTGCCCGAGTCGTTCGTGATCTTCACCCCAACCTCTTTTTTCAT
TCCCATTTCATTTCTACCCTTGGGCAGATTTTCCAATTTTTCCTCCTCGC
TGACCGTGACAATGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATG
TGCCTCGGATCTTGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCA
GATTGGTGCCTCATGAGCGGGAAGGAAGGAGGAAAGGAGGGGGAGGTGTG
GTATTTCAATAAACGGACATCGGATGTAAGAAAGCAGACGCCGATAGAGC
TGGGAGATGGAGGAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGC
CAAGGAGGGCGAAAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGT
GGCGCTGACGTGGTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAA
ATGGAATTTTGTCACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGC
TTGGGCTTGAATGAAAAGGAGGTGAGCACTCTGTGGGGTATGGAGGAAGG
GGAAGGAAGGAGAGAGAGAGGGGAAAGGGAGGACAGTTTTTTTTTCTTAA
TATGTCCTGTCTTTAAAACATATTTCACTCTTCTTCTTTTATTCTCATGC
CAATATCATCTACAGGTGGAACAATTTACCAGTCTGGCGGATTCCAACGG
GGACGGCATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCC
TTCGCAAGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCT
ATTATCGACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCT
GACGGTATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGG
AGGAGGGGAAAGCAGAGGGAGGGGAGGCTTGAGAGTGACAGGAAAGCAAT
GAGGAGTACAAAATAGTATGAGGAGAGATAGTGTTAA

Coding sequence (CDS) from alignment at scaffold_14:744668..746054+

>mRNA_6185 ID=mRNA_6185|Name=jgi.p|Nanoce1779_2|649428|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_14:744668..746054+ (Nannochloropsis oceanica)
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAGAAAGCAAAGAGTAT
GACCAATTCGCCAAGCGTCGCCGGAGAGCTCGCACATAGCGCCAGTATTA
TTCTCAAGAGCAGCAGTAAAAGCACTCATACGTTGGACGCCGCCGAGACC
AGCAAGGCACAACGCCTGGCCACGAGCGCAGGGGATTTTGATGAGATAGT
GGCGTGGCTGGATTGGGAGTTTGCCAAGCATGATAACAACAAAGATGGCT
TTCTCGATTACCATGAATTTGTGCGGTTTATCCGCTCGCTGAACCTGAAC
ATGACCACGAAGGAGATTTTCCAATTTTTCCTCCTCGCTGACCGTGACAA
TGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATGTGCCTCGGATCT
TGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCAGATTGGTGCCTC
ATGAGCGGGAAGGAAGGAGGAAAGGAGGGGGAGGTGTGGTATTTCAATAA
ACGGACATCGGATGTAAGAAAGCAGACGCCGATAGAGCTGGGAGATGGAG
GAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGCCAAGGAGGGCGA
AAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGTGGCGCTGACGTG
GTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAAATGGAATTTTGT
CACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGCTTGGGCTTGAAT
GAAAAGGAGGTGGAACAATTTACCAGTCTGGCGGATTCCAACGGGGACGG
CATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCCTTCGCA
AGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCTATTATC
GACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCTGACGGT
ATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGGAGGAGG
GGAAAGCAGAGGGAGGGGAGGCTTGAATGGGTTCGGGTCAGAGCAGCGCC
GCTCGAAGAAAGAAAGCAAAGAGTATGACCAATTCGCCAAGCGTCGCCGG
AGAGCTCGCACATAGCGCCAGTATTATTCTCAAGAGCAGCAGTAAAAGCA
CTCATACGTTGGACGCCGCCGAGACCAGCAAGGCACAACGCCTGGCCACG
AGCGCAGGGGATTTTGATGAGATAGTGGCGTGGCTGGATTGGGAGTTTGC
CAAGCATGATAACAACAAAGATGGCTTTCTCGATTACCATGAATTTGTGC
GGTTTATCCGCTCGCTGAACCTGAACATGACCACGAAGGAGATTTTCCAA
TTTTTCCTCCTCGCTGACCGTGACAATGACTATCGCATCGTTTGGTGCGA
AATTGAGCAGGATGTGCCTCGGATCTTGAGCAAAATTTACGAAGGAATAC
CGGAAGGGCCATCAGATTGGTGCCTCATGAGCGGGAAGGAAGGAGGAAAG
GAGGGGGAGGTGTGGTATTTCAATAAACGGACATCGGATGTAAGAAAGCA
GACGCCGATAGAGCTGGGAGATGGAGGAGGAGAGTATGGGATAAAGGAGA
ACGTGGACATGGGCCAAGGAGGGCGAAAGGAGGCGGTGTTGGAAAACACC
AAGACGCTTGACGTGGCGCTGACGTGGTTGGATTGGGAGTTCAAGAAGGC
GGATTTCGATAAAAATGGAATTTTGTCACATCATGAGTTCATGGCCTTTG
TCCGGGGGCTGCGCTTGGGCTTGAATGAAAAGGAGGTGGAACAATTTACC
AGTCTGGCGGATTCCAACGGGGACGGCATGGTGGAATGGACCGAGGTCCT
GGAGCTCACACCCCTCATCCTTCGCAAGCTCTACACCGCCCTTCCTCCCG
GGCCACATGATTGGTGTGCTATTATCGACGCGGAAGAGAATGAATACTAC
CTGAACAAGCGCACGGGGCTGACGGTATCGACGCGTCCGCCTGATTATGT
GCCGGTGAGGACCGAGACGGAGGAGGGGAAAGCAGAGGGAGGGGAGGCTT
GAATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAGAAAGCAAAGAGT
ATGACCAATTCGCCAAGCGTCGCCGGAGAGCTCGCACATAGCGCCAGTAT
TATTCTCAAGAGCAGCAGTAAAAGCACTCATACGTTGGACGCCGCCGAGA
CCAGCAAGGCACAACGCCTGGCCACGAGCGCAGGGGATTTTGATGAGATA
GTGGCGTGGCTGGATTGGGAGTTTGCCAAGCATGATAACAACAAAGATGG
CTTTCTCGATTACCATGAATTTGTGCGGTTTATCCGCTCGCTGAACCTGA
ACATGACCACGAAGGAGATTTTCCAATTTTTCCTCCTCGCTGACCGTGAC
AATGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATGTGCCTCGGAT
CTTGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCAGATTGGTGCC
TCATGAGCGGGAAGGAAGGAGGAAAGGAGGGGGAGGTGTGGTATTTCAAT
AAACGGACATCGGATGTAAGAAAGCAGACGCCGATAGAGCTGGGAGATGG
AGGAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGCCAAGGAGGGC
GAAAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGTGGCGCTGACG
TGGTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAAATGGAATTTT
GTCACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGCTTGGGCTTGA
ATGAAAAGGAGGTGGAACAATTTACCAGTCTGGCGGATTCCAACGGGGAC
GGCATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCCTTCG
CAAGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCTATTA
TCGACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCTGACG
GTATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGGAGGA
GGGGAAAGCAGAGGGAGGGGAGGCTTGAATGGGTTCGGGTCAGAGCAGCG
CCGCTCGAAGAAAGAAAGCAAAGAGTATGACCAATTCGCCAAGCGTCGCC
GGAGAGCTCGCACATAGCGCCAGTATTATTCTCAAGAGCAGCAGTAAAAG
CACTCATACGTTGGACGCCGCCGAGACCAGCAAGGCACAACGCCTGGCCA
CGAGCGCAGGGGATTTTGATGAGATAGTGGCGTGGCTGGATTGGGAGTTT
GCCAAGCATGATAACAACAAAGATGGCTTTCTCGATTACCATGAATTTGT
GCGGTTTATCCGCTCGCTGAACCTGAACATGACCACGAAGGAGATTTTCC
AATTTTTCCTCCTCGCTGACCGTGACAATGACTATCGCATCGTTTGGTGC
GAAATTGAGCAGGATGTGCCTCGGATCTTGAGCAAAATTTACGAAGGAAT
ACCGGAAGGGCCATCAGATTGGTGCCTCATGAGCGGGAAGGAAGGAGGAA
AGGAGGGGGAGGTGTGGTATTTCAATAAACGGACATCGGATGTAAGAAAG
CAGACGCCGATAGAGCTGGGAGATGGAGGAGGAGAGTATGGGATAAAGGA
GAACGTGGACATGGGCCAAGGAGGGCGAAAGGAGGCGGTGTTGGAAAACA
CCAAGACGCTTGACGTGGCGCTGACGTGGTTGGATTGGGAGTTCAAGAAG
GCGGATTTCGATAAAAATGGAATTTTGTCACATCATGAGTTCATGGCCTT
TGTCCGGGGGCTGCGCTTGGGCTTGAATGAAAAGGAGGTGGAACAATTTA
CCAGTCTGGCGGATTCCAACGGGGACGGCATGGTGGAATGGACCGAGGTC
CTGGAGCTCACACCCCTCATCCTTCGCAAGCTCTACACCGCCCTTCCTCC
CGGGCCACATGATTGGTGTGCTATTATCGACGCGGAAGAGAATGAATACT
ACCTGAACAAGCGCACGGGGCTGACGGTATCGACGCGTCCGCCTGATTAT
GTGCCGGTGAGGACCGAGACGGAGGAGGGGAAAGCAGAGGGAGGGGAGGC
TTGA

Synonyms

Publications