jgi.p|Nanoce1779_2|84118, mRNA_6183 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|84118
Unique NamemRNA_6183
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1110
Alignment locationscaffold_14:740243..741638 +

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Properties
Property NameValue
TranscriptId84204
TrackFilteredModels2
ProteinId84118
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:740243..741638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84118gene_6183Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84118mRNA_6183-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6183CDS_6183Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Nanoce1779_2|84118|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
AGTGACGGCTCAACGGTGTTGGTTTTGTGCGGAGAGCACAGCCTTTTCGT
CCTCTCTCTACAGCAGCAGCAGCATGGAGAGAAGGGGGATGATCATCCTT
CATTGGCCCATTCCATGTCGGGTATCATCCGTCGTGGGGCTGCGCTCTCC
CTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCTTCTCACCCTCTTCCTCT
CGGGAGTTCCGGTGGTCTCGACTGGCCCCTCGTGCGTTGGCGCCGCGCAG
AGGAAGGGGGGGAGGGAGGGCAGGAGGGAGGGCGGATGGTCGTGGTGGGC
AAAGAGGGAGAGGAGGAGGAGGATGAGGAGGAAGAAGAGGAGAGGGAGGA
GGGGGAAGCAGCAGCTGTGGCTTTCGCCTCGGCTGAAATTGAAGGAGGAG
AAGAAAGACAGTCAGAACGGCAAGCTCGACGCCGGCAGCAGCAGCAGCAG
CAGCAACAGCGAGAAGGAGGGGAGGGGAAAGAAAGCAGCGACGAGGAGAA
ATCAGATGAGAGTGATGTCAGCGACGATGACGACAACGAGGAGGTGGAGG
AGGAGGAGGAGAAGGATGAGGAAGAAGAAGAAGTGGAAGTTGACGGAAAT
CAGCTTACTCTTTCGTCCTCGTCCTTTTCCTCGTCATTCTCCTCCTCCTC
CTCCTGCTCCCTCCCTTCCTCCCTCCCTTCCTCCCCCCTCCTCCTCGTCC
ACCTCGCCGGGGGTCTCTTGCTCTGCTGGAATTTAAACAAGTCTGAAAAA
CGAGGGAGGTTCGTCGGGAGGAGGCAAGGGAGATATCGCCTGAGAGCAGC
TTTCAACGAGGGAGGGAGGGGGCCAGGACCAAAGCTTCTCGCAGGTGGGA
GTGAGGATGGTCGGGTGATGGTTTGGAGGGAGGGAGGGGGGGAGGAACCG
ATTCAGGCGTTGAGTGGGCATGGAGGGGTGGTGAGTGACGTGGCGTGGTG
TCCAGGTAATGCACAAGTGCTGGCGTCTTGCTCCGACGACGGGTCGGTTA
GGATATGGGCCGCGGAGGAGAGTTTGGTGGGAGGGAGGGAGGGAGGGCCG
GTGATGCTGCGGGGGTGAAATGAGAAGGAGGACCGGGTGGAGGGCAGCAA
AGATGACTAC
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protein sequence of jgi.p|Nanoce1779_2|84118

>mRNA_6183-protein ID=mRNA_6183-protein|Name=jgi.p|Nanoce1779_2|84118|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MSGIIRRGAALSLPPSRPPSLPPSHPLPLGSSGGLDWPLVRWRRAEEGGE
GGQEGGRMVVVGKEGEEEEDEEEEEEREEGEAAAVAFASAEIEGGEERQS
ERQARRRQQQQQQQQREGGEGKESSDEEKSDESDVSDDDDNEEVEEEEEK
DEEEEEVEVDGNQLTLSSSSFSSSFSSSSSCSLPSSLPSSPLLLVHLAGG
LLLCWNLNKSEKRGRFVGRRQGRYRLRAAFNEGGRGPGPKLLAGGSEDGR
VMVWREGGGEEPIQALSGHGGVVSDVAWCPGNAQVLASCSDDGSVRIWAA
EESLVGGREGGPVMLRG*
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mRNA from alignment at scaffold_14:740243..741638+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Nanoce1779_2|84118|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp|location=Sequence derived from alignment at scaffold_14:740243..741638+ (Nannochloropsis oceanica)
AGTGACGGCTCAACGGTGTTGGTTTTGTGCGGAGAGCACAGCCTTTTCGT
CCTCTCTCTACAGCAGCAGCAGCATGGAGAGAAGGGGGATGATCATCCTT
CATTGGCCCATTCCATGTCGGGTATCATCCGTCGTGGGGCTGCGCTCTCC
CTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCTTCTCACCCTCTTCCTCT
CGGGAGTTCCGGTGGTCTCGACTGGCCCCTCGTGCGTTGGCGCCGCGCAG
AGGAAGGGGGGGAGGGAGGGCAGGAGGGAGGGCGGATGGTCGTGGTGGGC
AAAGAGGGAGAGGAGGAGGAGGATGAGGAGGAAGAAGAGGAGAGGGAGGA
GGGGGAAGCAGCAGCTGTGGCTTTCGCCTCGGCTGAAATTGAAGGAGGAG
AAGAAAGACAGTCAGAACGGCAAGCTCGACGCCGGCAGCAGCAGCAGCAG
CAGCAACAGCGAGAAGGAGGGGAGGGGAAAGAAAGCAGCGACGAGGAGAA
ATCAGATGAGAGTGATGTCAGCGACGATGACGACAACGAGGAGGTGGAGG
AGGAGGAGGAGAAGGATGAGGAAGAAGAAGAAGTGGAAGTTGACGGAAAT
CAGCTTACTCTTTCGTCCTCGTCCTTTTCCTCGTCATTCTCCGACGACGG
CGCGGGGGGGTGGCATGGAAGACGAAGGGGAAGAAATTCAAGCTCGCCAT
CGTCACCACCACCACCACCACCACCACCACCACCAGCAGCAGCAGCAGCA
GCAGCAGCAACGACGGCGAAAAGGTGTCAACGATGGCACTTACGGCCATT
CCCCATCTCCCACTGCACCCTCGTCCTCCTCTCCTCCTTCCTCCTCTTCC
TCCCTCCCCCCCTACCGCCTCCAGGAAGTCGAAGAACTCTACTTCCGCCG
GGTAGTCATGTCCTTCTCCATCTCCTCCTCCTCCTCCTCCTGCTCCCTCC
CTTCCTCCCTCCCTTCCTCCCCCCTCCTCCTCGTCCACCTCGCCGGGGGT
CTCTTGCTCTGCTGGAATTTAAACAAGTCTGAAAAACGAGGGAGGTTCGT
CGGGAGGAGGCAAGGGAGATATCGCCTGAGAGCAGCTTTCAACGAGGGAG
GGAGGGGGCCAGGACCAAAGCTTCTCGCAGGTGGGAGTGAGGATGGTCGG
GTGATGGTTTGGAGGGAGGGAGGGGGGGAGGAACCGATTCAGGCGTTGAG
TGGGCATGGAGGGGTGGTGAGTGACGTGGCGTGGTGTCCAGGTAATGCAC
AAGTGCTGGCGTCTTGCTCCGACGACGGGTCGGTTAGGATATGGGCCGCG
GAGGAGAGTTTGGTGGGAGGGAGGGAGGGAGGGCCGGTGATGCTGCGGGG
GTGAAATGAGAAGGAGGACCGGGTGGAGGGCAGCAAAGATGACTAC
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Coding sequence (CDS) from alignment at scaffold_14:740243..741638+

>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Nanoce1779_2|84118|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_14:740243..741638+ (Nannochloropsis oceanica)
ATGTCGGGTATCATCCGTCGTGGGGCTGCGCTCTCCCTCCCTCCCTCCCG
CCCTCCCTCCCTCCCTCCTTCTCACCCTCTTCCTCTCGGGAGTTCCGGTG
GTCTCGACTGGCCCCTCGTGCGTTGGCGCCGCGCAGAGGAAGGGGGGGAG
GGAGGGCAGGAGGGAGGGCGGATGGTCGTGGTGGGCAAAGAGGGAGAGGA
GGAGGAGGATGAGGAGGAAGAAGAGGAGAGGGAGGAGGGGGAAGCAGCAG
CTGTGGCTTTCGCCTCGGCTGAAATTGAAGGAGGAGAAGAAAGACAGTCA
GAACGGCAAGCTCGACGCCGGCAGCAGCAGCAGCAGCAGCAACAGCGAGA
AGGAGGGGAGGGGAAAGAAAGCAGCGACGAGGAGAAATCAGATGAGAGTG
ATGTCAGCGACGATGACGACAACGAGGAGGTGGAGGAGGAGGAGGAGAAG
GATGAGGAAGAAGAAGAAGTGGAAGTTGACGGAAATCAGCTTACTCTTTC
GTCCTCGTCCTTTTCCTCGTCATTCTCCTCCTCCTCCTCCTGCTCCCTCC
CTTCCTCCCTCCCTTCCTCCCCCCTCCTCCTCGTCCACCTCGCCGGGGGT
CTCTTGCTCTGCTGGAATTTAAACAAGTCTGAAAAACGAGGGAGGTTCGT
CGGGAGGAGGCAAGGGAGATATCGCCTGAGAGCAGCTTTCAACGAGGGAG
GGAGGGGGCCAGGACCAAAGCTTCTCGCAGGTGGGAGTGAGGATGGTCGG
GTGATGGTTTGGAGGGAGGGAGGGGGGGAGGAACCGATTCAGGCGTTGAG
TGGGCATGGAGGGGTGGTGAGTGACGTGGCGTGGTGTCCAGGTAATGCAC
AAGTGCTGGCGTCTTGCTCCGACGACGGGTCGGTTAGGATATGGGCCGCG
GAGGAGAGTTTGGTGGGAGGGAGGGAGGGAGGGCCGGTGATGCTGCGGGG
GTGAATGTCGGGTATCATCCGTCGTGGGGCTGCGCTCTCCCTCCCTCCCT
CCCGCCCTCCCTCCCTCCCTCCTTCTCACCCTCTTCCTCTCGGGAGTTCC
GGTGGTCTCGACTGGCCCCTCGTGCGTTGGCGCCGCGCAGAGGAAGGGGG
GGAGGGAGGGCAGGAGGGAGGGCGGATGGTCGTGGTGGGCAAAGAGGGAG
AGGAGGAGGAGGATGAGGAGGAAGAAGAGGAGAGGGAGGAGGGGGAAGCA
GCAGCTGTGGCTTTCGCCTCGGCTGAAATTGAAGGAGGAGAAGAAAGACA
GTCAGAACGGCAAGCTCGACGCCGGCAGCAGCAGCAGCAGCAGCAACAGC
GAGAAGGAGGGGAGGGGAAAGAAAGCAGCGACGAGGAGAAATCAGATGAG
AGTGATGTCAGCGACGATGACGACAACGAGGAGGTGGAGGAGGAGGAGGA
GAAGGATGAGGAAGAAGAAGAAGTGGAAGTTGACGGAAATCAGCTTACTC
TTTCGTCCTCGTCCTTTTCCTCGTCATTCTCCTCCTCCTCCTCCTGCTCC
CTCCCTTCCTCCCTCCCTTCCTCCCCCCTCCTCCTCGTCCACCTCGCCGG
GGGTCTCTTGCTCTGCTGGAATTTAAACAAGTCTGAAAAACGAGGGAGGT
TCGTCGGGAGGAGGCAAGGGAGATATCGCCTGAGAGCAGCTTTCAACGAG
GGAGGGAGGGGGCCAGGACCAAAGCTTCTCGCAGGTGGGAGTGAGGATGG
TCGGGTGATGGTTTGGAGGGAGGGAGGGGGGGAGGAACCGATTCAGGCGT
TGAGTGGGCATGGAGGGGTGGTGAGTGACGTGGCGTGGTGTCCAGGTAAT
GCACAAGTGCTGGCGTCTTGCTCCGACGACGGGTCGGTTAGGATATGGGC
CGCGGAGGAGAGTTTGGTGGGAGGGAGGGAGGGAGGGCCGGTGATGCTGC
GGGGGTGA
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Synonyms
Publications